data_3MZI # _model_server_result.job_id 3mgHUhC969h065wnwX3abw _model_server_result.datetime_utc '2025-01-15 02:38:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mzi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":154}' # _entry.id 3MZI # _exptl.entry_id 3MZI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.89 _cell.angle_gamma 90 _cell.entry_id 3MZI _cell.length_a 41.85 _cell.length_b 119.48 _cell.length_c 93.26 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MZI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,M,N 1 1 C,D,I,J,O,P 2 1 E,F,K,L,Q,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 3MZI _atom_sites.fract_transf_matrix[1][1] 0.023895 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005468 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00837 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FMN A 1 154 154 FMN FMN . H 2 FMN B 1 154 154 FMN FMN . I 2 FMN C 1 154 154 FMN FMN . J 2 FMN D 1 154 154 FMN FMN . K 2 FMN E 1 154 154 FMN FMN . L 2 FMN F 1 154 154 FMN FMN . M 3 HOH A 1 202 202 HOH HOH . M 3 HOH A 2 203 203 HOH HOH . M 3 HOH A 3 204 204 HOH HOH . M 3 HOH A 4 205 205 HOH HOH . M 3 HOH A 5 206 206 HOH HOH . M 3 HOH A 6 207 207 HOH HOH . M 3 HOH A 7 208 208 HOH HOH . M 3 HOH A 8 209 209 HOH HOH . M 3 HOH A 9 210 210 HOH HOH . N 3 HOH B 1 200 200 HOH HOH . N 3 HOH B 2 201 201 HOH HOH . N 3 HOH B 3 202 202 HOH HOH . N 3 HOH B 4 203 203 HOH HOH . N 3 HOH B 5 204 204 HOH HOH . N 3 HOH B 6 205 205 HOH HOH . N 3 HOH B 7 206 206 HOH HOH . N 3 HOH B 8 207 207 HOH HOH . N 3 HOH B 9 208 208 HOH HOH . N 3 HOH B 10 209 209 HOH HOH . N 3 HOH B 11 210 210 HOH HOH . N 3 HOH B 12 211 211 HOH HOH . N 3 HOH B 13 212 212 HOH HOH . N 3 HOH B 14 213 213 HOH HOH . N 3 HOH B 15 214 214 HOH HOH . N 3 HOH B 16 215 215 HOH HOH . N 3 HOH B 17 216 216 HOH HOH . N 3 HOH B 18 217 217 HOH HOH . N 3 HOH B 19 218 218 HOH HOH . N 3 HOH B 20 219 219 HOH HOH . N 3 HOH B 21 220 220 HOH HOH . N 3 HOH B 22 221 221 HOH HOH . N 3 HOH B 23 222 200 HOH HOH . N 3 HOH B 24 223 201 HOH HOH . O 3 HOH C 1 200 200 HOH HOH . O 3 HOH C 2 201 201 HOH HOH . O 3 HOH C 3 202 202 HOH HOH . O 3 HOH C 4 203 203 HOH HOH . O 3 HOH C 5 204 204 HOH HOH . O 3 HOH C 6 205 205 HOH HOH . O 3 HOH C 7 206 206 HOH HOH . O 3 HOH C 8 207 207 HOH HOH . O 3 HOH C 9 208 208 HOH HOH . O 3 HOH C 10 209 209 HOH HOH . O 3 HOH C 11 210 210 HOH HOH . O 3 HOH C 12 211 211 HOH HOH . O 3 HOH C 13 212 212 HOH HOH . O 3 HOH C 14 213 213 HOH HOH . O 3 HOH C 15 214 214 HOH HOH . O 3 HOH C 16 215 215 HOH HOH . O 3 HOH C 17 216 216 HOH HOH . P 3 HOH D 1 200 200 HOH HOH . P 3 HOH D 2 201 201 HOH HOH . P 3 HOH D 3 202 202 HOH HOH . P 3 HOH D 4 203 203 HOH HOH . P 3 HOH D 5 204 204 HOH HOH . P 3 HOH D 6 205 205 HOH HOH . P 3 HOH D 7 206 206 HOH HOH . P 3 HOH D 8 207 207 HOH HOH . P 3 HOH D 9 208 208 HOH HOH . P 3 HOH D 10 209 209 HOH HOH . P 3 HOH D 11 210 210 HOH HOH . P 3 HOH D 12 211 211 HOH HOH . P 3 HOH D 13 212 212 HOH HOH . P 3 HOH D 14 213 213 HOH HOH . P 3 HOH D 15 214 214 HOH HOH . P 3 HOH D 16 215 215 HOH HOH . Q 3 HOH E 1 200 200 HOH HOH . Q 3 HOH E 2 201 201 HOH HOH . Q 3 HOH E 3 202 202 HOH HOH . Q 3 HOH E 4 203 203 HOH HOH . Q 3 HOH E 5 204 204 HOH HOH . Q 3 HOH E 6 205 205 HOH HOH . Q 3 HOH E 7 206 206 HOH HOH . Q 3 HOH E 8 207 207 HOH HOH . Q 3 HOH E 9 208 208 HOH HOH . Q 3 HOH E 10 209 209 HOH HOH . Q 3 HOH E 11 210 210 HOH HOH . R 3 HOH F 1 200 200 HOH HOH . R 3 HOH F 2 201 201 HOH HOH . R 3 HOH F 3 202 202 HOH HOH . R 3 HOH F 4 203 203 HOH HOH . R 3 HOH F 5 204 204 HOH HOH . R 3 HOH F 6 205 205 HOH HOH . R 3 HOH F 7 206 206 HOH HOH . R 3 HOH F 8 207 207 HOH HOH . R 3 HOH F 9 208 208 HOH HOH . R 3 HOH F 10 209 209 HOH HOH . R 3 HOH F 11 210 210 HOH HOH . R 3 HOH F 12 211 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . G 2 -32.256 51.677 -114.272 1 84.78 ? N1 FMN 154 A 1 HETATM 2 C C2 FMN . . . G 2 -33.061 51.974 -113.198 1 82.13 ? C2 FMN 154 A 1 HETATM 3 O O2 FMN . . . G 2 -34.283 51.99 -113.353 1 80.53 ? O2 FMN 154 A 1 HETATM 4 N N3 FMN . . . G 2 -32.497 52.25 -111.969 1 76.85 ? N3 FMN 154 A 1 HETATM 5 C C4 FMN . . . G 2 -31.128 52.225 -111.816 1 82.74 ? C4 FMN 154 A 1 HETATM 6 O O4 FMN . . . G 2 -30.608 52.468 -110.723 1 77.15 ? O4 FMN 154 A 1 HETATM 7 C C4A FMN . . . G 2 -30.324 51.923 -112.905 1 84.08 ? C4A FMN 154 A 1 HETATM 8 N N5 FMN . . . G 2 -28.958 51.898 -112.749 1 82.67 ? N5 FMN 154 A 1 HETATM 9 C C5A FMN . . . G 2 -28.159 51.607 -113.825 1 81.9 ? C5A FMN 154 A 1 HETATM 10 C C6 FMN . . . G 2 -26.78 51.586 -113.662 1 89.11 ? C6 FMN 154 A 1 HETATM 11 C C7 FMN . . . G 2 -25.959 51.288 -114.743 1 94.15 ? C7 FMN 154 A 1 HETATM 12 C C7M FMN . . . G 2 -24.469 51.265 -114.561 1 84.39 ? C7M FMN 154 A 1 HETATM 13 C C8 FMN . . . G 2 -26.528 51.014 -115.985 1 97.01 ? C8 FMN 154 A 1 HETATM 14 C C8M FMN . . . G 2 -25.656 50.686 -117.157 1 99.73 ? C8M FMN 154 A 1 HETATM 15 C C9 FMN . . . G 2 -27.908 51.037 -116.143 1 88.86 ? C9 FMN 154 A 1 HETATM 16 C C9A FMN . . . G 2 -28.726 51.334 -115.062 1 82.69 ? C9A FMN 154 A 1 HETATM 17 N N10 FMN . . . G 2 -30.096 51.345 -115.224 1 84.16 ? N10 FMN 154 A 1 HETATM 18 C C10 FMN . . . G 2 -30.891 51.649 -114.138 1 82.39 ? C10 FMN 154 A 1 HETATM 19 C C1' FMN . . . G 2 -30.706 51.061 -116.577 1 81.83 ? C1' FMN 154 A 1 HETATM 20 C C2' FMN . . . G 2 -31.531 49.778 -116.654 1 83.02 ? C2' FMN 154 A 1 HETATM 21 O O2' FMN . . . G 2 -30.701 48.724 -117.096 1 83.21 ? O2' FMN 154 A 1 HETATM 22 C C3' FMN . . . G 2 -32.699 49.943 -117.627 1 85.77 ? C3' FMN 154 A 1 HETATM 23 O O3' FMN . . . G 2 -32.348 50.933 -118.567 1 86.87 ? O3' FMN 154 A 1 HETATM 24 C C4' FMN . . . G 2 -33.992 50.376 -116.937 1 89.21 ? C4' FMN 154 A 1 HETATM 25 O O4' FMN . . . G 2 -34.479 49.403 -116.034 1 99.21 ? O4' FMN 154 A 1 HETATM 26 C C5' FMN . . . G 2 -35.084 50.635 -117.957 1 79.24 ? C5' FMN 154 A 1 HETATM 27 O O5' FMN . . . G 2 -36.113 51.294 -117.275 1 79.31 ? O5' FMN 154 A 1 HETATM 28 P P FMN . . . G 2 -37.39 51.805 -118.073 0 58.39 ? P FMN 154 A 1 HETATM 29 O O1P FMN . . . G 2 -38.33 50.623 -118.034 1 58.71 ? O1P FMN 154 A 1 HETATM 30 O O2P FMN . . . G 2 -37.057 52.162 -119.506 1 53.46 ? O2P FMN 154 A 1 HETATM 31 O O3P FMN . . . G 2 -37.854 53.054 -117.367 1 62.88 ? O3P FMN 154 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #