data_3MZI # _model_server_result.job_id sS-Z-OvoGmt0XfTUIYZVtQ _model_server_result.datetime_utc '2025-01-15 02:24:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mzi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":154}' # _entry.id 3MZI # _exptl.entry_id 3MZI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.89 _cell.angle_gamma 90 _cell.entry_id 3MZI _cell.length_a 41.85 _cell.length_b 119.48 _cell.length_c 93.26 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MZI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,M,N 1 1 C,D,I,J,O,P 2 1 E,F,K,L,Q,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 3MZI _atom_sites.fract_transf_matrix[1][1] 0.023895 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005468 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00837 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FMN A 1 154 154 FMN FMN . H 2 FMN B 1 154 154 FMN FMN . I 2 FMN C 1 154 154 FMN FMN . J 2 FMN D 1 154 154 FMN FMN . K 2 FMN E 1 154 154 FMN FMN . L 2 FMN F 1 154 154 FMN FMN . M 3 HOH A 1 202 202 HOH HOH . M 3 HOH A 2 203 203 HOH HOH . M 3 HOH A 3 204 204 HOH HOH . M 3 HOH A 4 205 205 HOH HOH . M 3 HOH A 5 206 206 HOH HOH . M 3 HOH A 6 207 207 HOH HOH . M 3 HOH A 7 208 208 HOH HOH . M 3 HOH A 8 209 209 HOH HOH . M 3 HOH A 9 210 210 HOH HOH . N 3 HOH B 1 200 200 HOH HOH . N 3 HOH B 2 201 201 HOH HOH . N 3 HOH B 3 202 202 HOH HOH . N 3 HOH B 4 203 203 HOH HOH . N 3 HOH B 5 204 204 HOH HOH . N 3 HOH B 6 205 205 HOH HOH . N 3 HOH B 7 206 206 HOH HOH . N 3 HOH B 8 207 207 HOH HOH . N 3 HOH B 9 208 208 HOH HOH . N 3 HOH B 10 209 209 HOH HOH . N 3 HOH B 11 210 210 HOH HOH . N 3 HOH B 12 211 211 HOH HOH . N 3 HOH B 13 212 212 HOH HOH . N 3 HOH B 14 213 213 HOH HOH . N 3 HOH B 15 214 214 HOH HOH . N 3 HOH B 16 215 215 HOH HOH . N 3 HOH B 17 216 216 HOH HOH . N 3 HOH B 18 217 217 HOH HOH . N 3 HOH B 19 218 218 HOH HOH . N 3 HOH B 20 219 219 HOH HOH . N 3 HOH B 21 220 220 HOH HOH . N 3 HOH B 22 221 221 HOH HOH . N 3 HOH B 23 222 200 HOH HOH . N 3 HOH B 24 223 201 HOH HOH . O 3 HOH C 1 200 200 HOH HOH . O 3 HOH C 2 201 201 HOH HOH . O 3 HOH C 3 202 202 HOH HOH . O 3 HOH C 4 203 203 HOH HOH . O 3 HOH C 5 204 204 HOH HOH . O 3 HOH C 6 205 205 HOH HOH . O 3 HOH C 7 206 206 HOH HOH . O 3 HOH C 8 207 207 HOH HOH . O 3 HOH C 9 208 208 HOH HOH . O 3 HOH C 10 209 209 HOH HOH . O 3 HOH C 11 210 210 HOH HOH . O 3 HOH C 12 211 211 HOH HOH . O 3 HOH C 13 212 212 HOH HOH . O 3 HOH C 14 213 213 HOH HOH . O 3 HOH C 15 214 214 HOH HOH . O 3 HOH C 16 215 215 HOH HOH . O 3 HOH C 17 216 216 HOH HOH . P 3 HOH D 1 200 200 HOH HOH . P 3 HOH D 2 201 201 HOH HOH . P 3 HOH D 3 202 202 HOH HOH . P 3 HOH D 4 203 203 HOH HOH . P 3 HOH D 5 204 204 HOH HOH . P 3 HOH D 6 205 205 HOH HOH . P 3 HOH D 7 206 206 HOH HOH . P 3 HOH D 8 207 207 HOH HOH . P 3 HOH D 9 208 208 HOH HOH . P 3 HOH D 10 209 209 HOH HOH . P 3 HOH D 11 210 210 HOH HOH . P 3 HOH D 12 211 211 HOH HOH . P 3 HOH D 13 212 212 HOH HOH . P 3 HOH D 14 213 213 HOH HOH . P 3 HOH D 15 214 214 HOH HOH . P 3 HOH D 16 215 215 HOH HOH . Q 3 HOH E 1 200 200 HOH HOH . Q 3 HOH E 2 201 201 HOH HOH . Q 3 HOH E 3 202 202 HOH HOH . Q 3 HOH E 4 203 203 HOH HOH . Q 3 HOH E 5 204 204 HOH HOH . Q 3 HOH E 6 205 205 HOH HOH . Q 3 HOH E 7 206 206 HOH HOH . Q 3 HOH E 8 207 207 HOH HOH . Q 3 HOH E 9 208 208 HOH HOH . Q 3 HOH E 10 209 209 HOH HOH . Q 3 HOH E 11 210 210 HOH HOH . R 3 HOH F 1 200 200 HOH HOH . R 3 HOH F 2 201 201 HOH HOH . R 3 HOH F 3 202 202 HOH HOH . R 3 HOH F 4 203 203 HOH HOH . R 3 HOH F 5 204 204 HOH HOH . R 3 HOH F 6 205 205 HOH HOH . R 3 HOH F 7 206 206 HOH HOH . R 3 HOH F 8 207 207 HOH HOH . R 3 HOH F 9 208 208 HOH HOH . R 3 HOH F 10 209 209 HOH HOH . R 3 HOH F 11 210 210 HOH HOH . R 3 HOH F 12 211 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . H 2 -24.54 25.646 -110.712 1 72.41 ? N1 FMN 154 B 1 HETATM 2 C C2 FMN . . . H 2 -23.214 25.714 -110.333 1 79.21 ? C2 FMN 154 B 1 HETATM 3 O O2 FMN . . . H 2 -22.333 25.449 -111.153 1 88.79 ? O2 FMN 154 B 1 HETATM 4 N N3 FMN . . . H 2 -22.88 26.074 -109.044 1 73.47 ? N3 FMN 154 B 1 HETATM 5 C C4 FMN . . . H 2 -23.875 26.367 -108.135 1 75.99 ? C4 FMN 154 B 1 HETATM 6 O O4 FMN . . . H 2 -23.546 26.684 -106.995 1 63.71 ? O4 FMN 154 B 1 HETATM 7 C C4A FMN . . . H 2 -25.225 26.309 -108.517 1 78.09 ? C4A FMN 154 B 1 HETATM 8 N N5 FMN . . . H 2 -26.234 26.608 -107.616 1 63.59 ? N5 FMN 154 B 1 HETATM 9 C C5A FMN . . . H 2 -27.553 26.543 -108.016 1 67.94 ? C5A FMN 154 B 1 HETATM 10 C C6 FMN . . . H 2 -28.573 26.838 -107.123 1 71.61 ? C6 FMN 154 B 1 HETATM 11 C C7 FMN . . . H 2 -29.902 26.773 -107.518 1 65.84 ? C7 FMN 154 B 1 HETATM 12 C C7M FMN . . . H 2 -30.991 27.092 -106.54 1 65.16 ? C7M FMN 154 B 1 HETATM 13 C C8 FMN . . . H 2 -30.216 26.405 -108.816 1 64.83 ? C8 FMN 154 B 1 HETATM 14 C C8M FMN . . . H 2 -31.644 26.33 -109.244 1 68.49 ? C8M FMN 154 B 1 HETATM 15 C C9 FMN . . . H 2 -29.203 26.109 -109.714 1 61.61 ? C9 FMN 154 B 1 HETATM 16 C C9A FMN . . . H 2 -27.873 26.175 -109.313 1 64.96 ? C9A FMN 154 B 1 HETATM 17 N N10 FMN . . . H 2 -26.878 25.876 -110.216 1 67.59 ? N10 FMN 154 B 1 HETATM 18 C C10 FMN . . . H 2 -25.551 25.943 -109.823 1 74.64 ? C10 FMN 154 B 1 HETATM 19 C C1' FMN . . . H 2 -27.281 25.48 -111.606 1 58.9 ? C1' FMN 154 B 1 HETATM 20 C C2' FMN . . . H 2 -26.715 26.374 -112.698 1 73.97 ? C2' FMN 154 B 1 HETATM 21 O O2' FMN . . . H 2 -27.665 27.368 -113.014 1 72.22 ? O2' FMN 154 B 1 HETATM 22 C C3' FMN . . . H 2 -26.437 25.508 -113.921 1 88.41 ? C3' FMN 154 B 1 HETATM 23 O O3' FMN . . . H 2 -26.925 24.214 -113.648 1 93.35 ? O3' FMN 154 B 1 HETATM 24 C C4' FMN . . . H 2 -24.954 25.381 -114.263 1 93.94 ? C4' FMN 154 B 1 HETATM 25 O O4' FMN . . . H 2 -24.416 26.656 -114.515 1 86.9 ? O4' FMN 154 B 1 HETATM 26 C C5' FMN . . . H 2 -24.776 24.495 -115.497 1 104.86 ? C5' FMN 154 B 1 HETATM 27 O O5' FMN . . . H 2 -23.593 23.727 -115.405 0.2 108.27 ? O5' FMN 154 B 1 HETATM 28 P P FMN . . . H 2 -23.239 22.64 -116.542 0.57 95.63 ? P FMN 154 B 1 HETATM 29 O O1P FMN . . . H 2 -23.058 23.4 -117.841 1 100.82 ? O1P FMN 154 B 1 HETATM 30 O O2P FMN . . . H 2 -24.361 21.628 -116.653 1 83.88 ? O2P FMN 154 B 1 HETATM 31 O O3P FMN . . . H 2 -21.963 21.906 -116.188 1 94.65 ? O3P FMN 154 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #