data_3MZI # _model_server_result.job_id gYhq0pHo5qiez7MHfh_xeQ _model_server_result.datetime_utc '2025-01-15 02:26:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mzi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":154}' # _entry.id 3MZI # _exptl.entry_id 3MZI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.89 _cell.angle_gamma 90 _cell.entry_id 3MZI _cell.length_a 41.85 _cell.length_b 119.48 _cell.length_c 93.26 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MZI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,M,N 1 1 C,D,I,J,O,P 2 1 E,F,K,L,Q,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 3MZI _atom_sites.fract_transf_matrix[1][1] 0.023895 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005468 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00837 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FMN A 1 154 154 FMN FMN . H 2 FMN B 1 154 154 FMN FMN . I 2 FMN C 1 154 154 FMN FMN . J 2 FMN D 1 154 154 FMN FMN . K 2 FMN E 1 154 154 FMN FMN . L 2 FMN F 1 154 154 FMN FMN . M 3 HOH A 1 202 202 HOH HOH . M 3 HOH A 2 203 203 HOH HOH . M 3 HOH A 3 204 204 HOH HOH . M 3 HOH A 4 205 205 HOH HOH . M 3 HOH A 5 206 206 HOH HOH . M 3 HOH A 6 207 207 HOH HOH . M 3 HOH A 7 208 208 HOH HOH . M 3 HOH A 8 209 209 HOH HOH . M 3 HOH A 9 210 210 HOH HOH . N 3 HOH B 1 200 200 HOH HOH . N 3 HOH B 2 201 201 HOH HOH . N 3 HOH B 3 202 202 HOH HOH . N 3 HOH B 4 203 203 HOH HOH . N 3 HOH B 5 204 204 HOH HOH . N 3 HOH B 6 205 205 HOH HOH . N 3 HOH B 7 206 206 HOH HOH . N 3 HOH B 8 207 207 HOH HOH . N 3 HOH B 9 208 208 HOH HOH . N 3 HOH B 10 209 209 HOH HOH . N 3 HOH B 11 210 210 HOH HOH . N 3 HOH B 12 211 211 HOH HOH . N 3 HOH B 13 212 212 HOH HOH . N 3 HOH B 14 213 213 HOH HOH . N 3 HOH B 15 214 214 HOH HOH . N 3 HOH B 16 215 215 HOH HOH . N 3 HOH B 17 216 216 HOH HOH . N 3 HOH B 18 217 217 HOH HOH . N 3 HOH B 19 218 218 HOH HOH . N 3 HOH B 20 219 219 HOH HOH . N 3 HOH B 21 220 220 HOH HOH . N 3 HOH B 22 221 221 HOH HOH . N 3 HOH B 23 222 200 HOH HOH . N 3 HOH B 24 223 201 HOH HOH . O 3 HOH C 1 200 200 HOH HOH . O 3 HOH C 2 201 201 HOH HOH . O 3 HOH C 3 202 202 HOH HOH . O 3 HOH C 4 203 203 HOH HOH . O 3 HOH C 5 204 204 HOH HOH . O 3 HOH C 6 205 205 HOH HOH . O 3 HOH C 7 206 206 HOH HOH . O 3 HOH C 8 207 207 HOH HOH . O 3 HOH C 9 208 208 HOH HOH . O 3 HOH C 10 209 209 HOH HOH . O 3 HOH C 11 210 210 HOH HOH . O 3 HOH C 12 211 211 HOH HOH . O 3 HOH C 13 212 212 HOH HOH . O 3 HOH C 14 213 213 HOH HOH . O 3 HOH C 15 214 214 HOH HOH . O 3 HOH C 16 215 215 HOH HOH . O 3 HOH C 17 216 216 HOH HOH . P 3 HOH D 1 200 200 HOH HOH . P 3 HOH D 2 201 201 HOH HOH . P 3 HOH D 3 202 202 HOH HOH . P 3 HOH D 4 203 203 HOH HOH . P 3 HOH D 5 204 204 HOH HOH . P 3 HOH D 6 205 205 HOH HOH . P 3 HOH D 7 206 206 HOH HOH . P 3 HOH D 8 207 207 HOH HOH . P 3 HOH D 9 208 208 HOH HOH . P 3 HOH D 10 209 209 HOH HOH . P 3 HOH D 11 210 210 HOH HOH . P 3 HOH D 12 211 211 HOH HOH . P 3 HOH D 13 212 212 HOH HOH . P 3 HOH D 14 213 213 HOH HOH . P 3 HOH D 15 214 214 HOH HOH . P 3 HOH D 16 215 215 HOH HOH . Q 3 HOH E 1 200 200 HOH HOH . Q 3 HOH E 2 201 201 HOH HOH . Q 3 HOH E 3 202 202 HOH HOH . Q 3 HOH E 4 203 203 HOH HOH . Q 3 HOH E 5 204 204 HOH HOH . Q 3 HOH E 6 205 205 HOH HOH . Q 3 HOH E 7 206 206 HOH HOH . Q 3 HOH E 8 207 207 HOH HOH . Q 3 HOH E 9 208 208 HOH HOH . Q 3 HOH E 10 209 209 HOH HOH . Q 3 HOH E 11 210 210 HOH HOH . R 3 HOH F 1 200 200 HOH HOH . R 3 HOH F 2 201 201 HOH HOH . R 3 HOH F 3 202 202 HOH HOH . R 3 HOH F 4 203 203 HOH HOH . R 3 HOH F 5 204 204 HOH HOH . R 3 HOH F 6 205 205 HOH HOH . R 3 HOH F 7 206 206 HOH HOH . R 3 HOH F 8 207 207 HOH HOH . R 3 HOH F 9 208 208 HOH HOH . R 3 HOH F 10 209 209 HOH HOH . R 3 HOH F 11 210 210 HOH HOH . R 3 HOH F 12 211 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . I 2 -54.865 57.535 -73.614 1 119.07 ? N1 FMN 154 C 1 HETATM 2 C C2 FMN . . . I 2 -53.976 57.86 -72.6 1 109.49 ? C2 FMN 154 C 1 HETATM 3 O O2 FMN . . . I 2 -54.409 58.135 -71.479 1 95.85 ? O2 FMN 154 C 1 HETATM 4 N N3 FMN . . . I 2 -52.614 57.873 -72.857 1 108.08 ? N3 FMN 154 C 1 HETATM 5 C C4 FMN . . . I 2 -52.144 57.561 -74.124 1 106.69 ? C4 FMN 154 C 1 HETATM 6 O O4 FMN . . . I 2 -50.94 57.567 -74.374 1 104.38 ? O4 FMN 154 C 1 HETATM 7 C C4A FMN . . . I 2 -53.036 57.234 -75.135 1 107.11 ? C4A FMN 154 C 1 HETATM 8 N N5 FMN . . . I 2 -52.543 56.925 -76.384 1 102.2 ? N5 FMN 154 C 1 HETATM 9 C C5A FMN . . . I 2 -53.415 56.601 -77.398 1 106.33 ? C5A FMN 154 C 1 HETATM 10 C C6 FMN . . . I 2 -52.911 56.289 -78.658 1 102.33 ? C6 FMN 154 C 1 HETATM 11 C C7 FMN . . . I 2 -53.772 55.954 -79.698 1 92.89 ? C7 FMN 154 C 1 HETATM 12 C C7M FMN . . . I 2 -53.212 55.619 -81.05 1 86.04 ? C7M FMN 154 C 1 HETATM 13 C C8 FMN . . . I 2 -55.145 55.936 -79.472 1 93.21 ? C8 FMN 154 C 1 HETATM 14 C C8M FMN . . . I 2 -56.089 55.582 -80.581 1 83.82 ? C8M FMN 154 C 1 HETATM 15 C C9 FMN . . . I 2 -55.647 56.25 -78.21 1 106.22 ? C9 FMN 154 C 1 HETATM 16 C C9A FMN . . . I 2 -54.789 56.586 -77.162 1 112.64 ? C9A FMN 154 C 1 HETATM 17 N N10 FMN . . . I 2 -55.293 56.89 -75.9 1 118.03 ? N10 FMN 154 C 1 HETATM 18 C C10 FMN . . . I 2 -54.408 57.22 -74.884 1 114.76 ? C10 FMN 154 C 1 HETATM 19 C C1' FMN . . . I 2 -56.786 56.88 -75.661 1 129.52 ? C1' FMN 154 C 1 HETATM 20 C C2' FMN . . . I 2 -57.28 55.893 -74.6 1 141.3 ? C2' FMN 154 C 1 HETATM 21 O O2' FMN . . . I 2 -57.375 54.613 -75.19 1 143.01 ? O2' FMN 154 C 1 HETATM 22 C C3' FMN . . . I 2 -58.655 56.282 -74.029 1 147.9 ? C3' FMN 154 C 1 HETATM 23 O O3' FMN . . . I 2 -59.295 57.197 -74.892 1 150.21 ? O3' FMN 154 C 1 HETATM 24 C C4' FMN . . . I 2 -58.601 56.865 -72.608 1 149.43 ? C4' FMN 154 C 1 HETATM 25 O O4' FMN . . . I 2 -59.163 55.951 -71.69 1 147.32 ? O4' FMN 154 C 1 HETATM 26 C C5' FMN . . . I 2 -59.363 58.182 -72.478 1 152.87 ? C5' FMN 154 C 1 HETATM 27 O O5' FMN . . . I 2 -59.383 58.592 -71.128 1 154.07 ? O5' FMN 154 C 1 HETATM 28 P P FMN . . . I 2 -60.522 59.58 -70.569 0.75 77.11 ? P FMN 154 C 1 HETATM 29 O O1P FMN . . . I 2 -61.857 59.059 -71.071 1 49.34 ? O1P FMN 154 C 1 HETATM 30 O O2P FMN . . . I 2 -60.265 61.013 -71.001 1 67.67 ? O2P FMN 154 C 1 HETATM 31 O O3P FMN . . . I 2 -60.469 59.504 -69.063 1 87.07 ? O3P FMN 154 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #