data_3MZS # _model_server_result.job_id iSQJOn9aaZ2PORvlcvnRUg _model_server_result.datetime_utc '2024-10-19 09:25:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mzs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":500}' # _entry.id 3MZS # _exptl.entry_id 3MZS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.96 _cell.angle_gamma 90 _cell.entry_id 3MZS _cell.length_a 109.45 _cell.length_b 94.63 _cell.length_c 113.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MZS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,Q 1 1 B,H,I,J,R 2 1 C,K,L,M,S 3 1 D,N,O,P,T 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 K N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 423 A CYS 423 1_555 E FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc2 E FE HEM . A HEM 500 1_555 F O2 HC9 . A HC9 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc3 B SG CYS 423 B CYS 423 1_555 H FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc4 H FE HEM . B HEM 500 1_555 I O2 HC9 . B HC9 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc5 C SG CYS 423 C CYS 423 1_555 K FE HEM . C HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc6 K FE HEM . C HEM 500 1_555 L O2 HC9 . C HC9 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc7 D SG CYS 423 D CYS 423 1_555 N FE HEM . D HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc8 N FE HEM . D HEM 500 1_555 O O2 HC9 . D HC9 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 207 n n CHA C4D HEM doub 208 n n CHA HHA HEM sing 209 n n CHB C4A HEM sing 210 n n CHB C1B HEM doub 211 n n CHB HHB HEM sing 212 n n CHC C4B HEM sing 213 n n CHC C1C HEM doub 214 n n CHC HHC HEM sing 215 n n CHD C4C HEM doub 216 n n CHD C1D HEM sing 217 n n CHD HHD HEM sing 218 n n C1A C2A HEM doub 219 n y C1A NA HEM sing 220 n y C2A C3A HEM sing 221 n y C2A CAA HEM sing 222 n n C3A C4A HEM doub 223 n y C3A CMA HEM sing 224 n n C4A NA HEM sing 225 n y CMA HMA HEM sing 226 n n CMA HMAA HEM sing 227 n n CMA HMAB HEM sing 228 n n CAA CBA HEM sing 229 n n CAA HAA HEM sing 230 n n CAA HAAA HEM sing 231 n n CBA CGA HEM sing 232 n n CBA HBA HEM sing 233 n n CBA HBAA HEM sing 234 n n CGA O1A HEM doub 235 n n CGA O2A HEM sing 236 n n C1B C2B HEM sing 237 n n C1B NB HEM sing 238 n n C2B C3B HEM doub 239 n n C2B CMB HEM sing 240 n n C3B C4B HEM sing 241 n n C3B CAB HEM sing 242 n n C4B NB HEM doub 243 n n CMB HMB HEM sing 244 n n CMB HMBA HEM sing 245 n n CMB HMBB HEM sing 246 n n CAB CBB HEM doub 247 n n CAB HAB HEM sing 248 n n CBB HBB HEM sing 249 n n CBB HBBA HEM sing 250 n n C1C C2C HEM sing 251 n y C1C NC HEM sing 252 n y C2C C3C HEM doub 253 n y C2C CMC HEM sing 254 n n C3C C4C HEM sing 255 n y C3C CAC HEM sing 256 n n C4C NC HEM sing 257 n y CMC HMC HEM sing 258 n n CMC HMCA HEM sing 259 n n CMC HMCB HEM sing 260 n n CAC CBC HEM doub 261 n n CAC HAC HEM sing 262 n n CBC HBC HEM sing 263 n n CBC HBCA HEM sing 264 n n C1D C2D HEM sing 265 n n C1D ND HEM doub 266 n n C2D C3D HEM doub 267 n n C2D CMD HEM sing 268 n n C3D C4D HEM sing 269 n n C3D CAD HEM sing 270 n n C4D ND HEM sing 271 n n CMD HMD HEM sing 272 n n CMD HMDA HEM sing 273 n n CMD HMDB HEM sing 274 n n CAD CBD HEM sing 275 n n CAD HAD HEM sing 276 n n CAD HADA HEM sing 277 n n CBD CGD HEM sing 278 n n CBD HBD HEM sing 279 n n CBD HBDA HEM sing 280 n n CGD O1D HEM doub 281 n n CGD O2D HEM sing 282 n n O2A H2A HEM sing 283 n n O2D H2D HEM sing 284 n n FE NA HEM sing 285 n n FE NB HEM sing 286 n n FE NC HEM sing 287 n n FE ND HEM sing 288 n n # _atom_sites.entry_id 3MZS _atom_sites.fract_transf_matrix[1][1] 0.009137 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000006 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010567 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 500 500 HEM HEM . F 3 HC9 A 1 501 501 HC9 HC9 . G 4 IPA A 1 502 502 IPA IPA . H 2 HEM B 1 500 500 HEM HEM . I 3 HC9 B 1 501 501 HC9 HC9 . J 4 IPA B 1 502 502 IPA IPA . K 2 HEM C 1 500 500 HEM HEM . L 3 HC9 C 1 501 501 HC9 HC9 . M 4 IPA C 1 502 502 IPA IPA . N 2 HEM D 1 500 500 HEM HEM . O 3 HC9 D 1 501 501 HC9 HC9 . P 4 IPA D 1 502 502 IPA IPA . Q 5 HOH A 1 518 518 HOH HOH . Q 5 HOH A 2 519 519 HOH HOH . Q 5 HOH A 3 520 520 HOH HOH . Q 5 HOH A 4 521 521 HOH HOH . Q 5 HOH A 5 522 522 HOH HOH . Q 5 HOH A 6 523 523 HOH HOH . Q 5 HOH A 7 524 524 HOH HOH . Q 5 HOH A 8 525 525 HOH HOH . Q 5 HOH A 9 526 526 HOH HOH . Q 5 HOH A 10 530 530 HOH HOH . Q 5 HOH A 11 532 532 HOH HOH . Q 5 HOH A 12 533 533 HOH HOH . Q 5 HOH A 13 544 544 HOH HOH . Q 5 HOH A 14 548 548 HOH HOH . Q 5 HOH A 15 549 549 HOH HOH . Q 5 HOH A 16 553 553 HOH HOH . Q 5 HOH A 17 556 556 HOH HOH . Q 5 HOH A 18 557 557 HOH HOH . Q 5 HOH A 19 560 560 HOH HOH . Q 5 HOH A 20 569 569 HOH HOH . Q 5 HOH A 21 571 571 HOH HOH . Q 5 HOH A 22 584 584 HOH HOH . Q 5 HOH A 23 586 586 HOH HOH . Q 5 HOH A 24 591 591 HOH HOH . Q 5 HOH A 25 592 592 HOH HOH . R 5 HOH B 1 514 514 HOH HOH . R 5 HOH B 2 515 515 HOH HOH . R 5 HOH B 3 516 516 HOH HOH . R 5 HOH B 4 517 517 HOH HOH . R 5 HOH B 5 531 531 HOH HOH . R 5 HOH B 6 535 535 HOH HOH . R 5 HOH B 7 538 538 HOH HOH . R 5 HOH B 8 539 539 HOH HOH . R 5 HOH B 9 552 552 HOH HOH . R 5 HOH B 10 565 565 HOH HOH . R 5 HOH B 11 572 572 HOH HOH . R 5 HOH B 12 575 575 HOH HOH . R 5 HOH B 13 576 576 HOH HOH . R 5 HOH B 14 589 589 HOH HOH . R 5 HOH B 15 590 590 HOH HOH . S 5 HOH C 1 509 509 HOH HOH . S 5 HOH C 2 510 510 HOH HOH . S 5 HOH C 3 511 511 HOH HOH . S 5 HOH C 4 512 512 HOH HOH . S 5 HOH C 5 513 513 HOH HOH . S 5 HOH C 6 528 528 HOH HOH . S 5 HOH C 7 537 537 HOH HOH . S 5 HOH C 8 540 540 HOH HOH . S 5 HOH C 9 543 543 HOH HOH . S 5 HOH C 10 546 546 HOH HOH . S 5 HOH C 11 547 547 HOH HOH . S 5 HOH C 12 550 550 HOH HOH . S 5 HOH C 13 554 554 HOH HOH . S 5 HOH C 14 555 555 HOH HOH . S 5 HOH C 15 558 558 HOH HOH . S 5 HOH C 16 561 561 HOH HOH . S 5 HOH C 17 562 562 HOH HOH . S 5 HOH C 18 564 564 HOH HOH . S 5 HOH C 19 566 566 HOH HOH . S 5 HOH C 20 568 568 HOH HOH . S 5 HOH C 21 573 573 HOH HOH . S 5 HOH C 22 574 574 HOH HOH . S 5 HOH C 23 579 579 HOH HOH . S 5 HOH C 24 581 581 HOH HOH . S 5 HOH C 25 582 582 HOH HOH . S 5 HOH C 26 588 588 HOH HOH . S 5 HOH C 27 593 593 HOH HOH . T 5 HOH D 1 503 503 HOH HOH . T 5 HOH D 2 504 504 HOH HOH . T 5 HOH D 3 505 505 HOH HOH . T 5 HOH D 4 506 506 HOH HOH . T 5 HOH D 5 507 507 HOH HOH . T 5 HOH D 6 508 508 HOH HOH . T 5 HOH D 7 527 527 HOH HOH . T 5 HOH D 8 529 529 HOH HOH . T 5 HOH D 9 534 534 HOH HOH . T 5 HOH D 10 536 536 HOH HOH . T 5 HOH D 11 541 541 HOH HOH . T 5 HOH D 12 542 542 HOH HOH . T 5 HOH D 13 545 545 HOH HOH . T 5 HOH D 14 551 551 HOH HOH . T 5 HOH D 15 559 559 HOH HOH . T 5 HOH D 16 563 563 HOH HOH . T 5 HOH D 17 567 567 HOH HOH . T 5 HOH D 18 570 570 HOH HOH . T 5 HOH D 19 577 577 HOH HOH . T 5 HOH D 20 578 578 HOH HOH . T 5 HOH D 21 580 580 HOH HOH . T 5 HOH D 22 583 583 HOH HOH . T 5 HOH D 23 585 585 HOH HOH . T 5 HOH D 24 587 587 HOH HOH . T 5 HOH D 25 594 594 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . H 2 46.716 -12.188 -0.217 1 46.27 ? CHA HEM 500 B 1 HETATM 2 C CHB HEM . . . H 2 42.169 -13.743 -0.859 1 46.2 ? CHB HEM 500 B 1 HETATM 3 C CHC HEM . . . H 2 43.691 -16.202 -4.753 1 41.82 ? CHC HEM 500 B 1 HETATM 4 C CHD HEM . . . H 2 48.261 -14.762 -3.861 1 51.8 ? CHD HEM 500 B 1 HETATM 5 C C1A HEM . . . H 2 45.241 -12.364 -0.108 1 45.91 ? C1A HEM 500 B 1 HETATM 6 C C2A HEM . . . H 2 44.348 -11.698 0.899 1 47.88 ? C2A HEM 500 B 1 HETATM 7 C C3A HEM . . . H 2 43.16 -12.233 0.789 1 44.02 ? C3A HEM 500 B 1 HETATM 8 C C4A HEM . . . H 2 43.151 -13.01 -0.476 1 44.78 ? C4A HEM 500 B 1 HETATM 9 C CMA HEM . . . H 2 41.933 -11.82 1.535 1 43.03 ? CMA HEM 500 B 1 HETATM 10 C CAA HEM . . . H 2 44.807 -10.638 1.858 1 52.36 ? CAA HEM 500 B 1 HETATM 11 C CBA HEM . . . H 2 44.587 -9.202 1.267 1 55.59 ? CBA HEM 500 B 1 HETATM 12 C CGA HEM . . . H 2 44.606 -8.167 2.394 1 52.33 ? CGA HEM 500 B 1 HETATM 13 O O1A HEM . . . H 2 45.525 -8.154 3.201 1 51.24 ? O1A HEM 500 B 1 HETATM 14 O O2A HEM . . . H 2 43.614 -7.297 2.476 1 52.15 ? O2A HEM 500 B 1 HETATM 15 C C1B HEM . . . H 2 42.274 -14.579 -2.063 1 42.17 ? C1B HEM 500 B 1 HETATM 16 C C2B HEM . . . H 2 41.165 -15.194 -2.513 1 38.58 ? C2B HEM 500 B 1 HETATM 17 C C3B HEM . . . H 2 41.558 -15.945 -3.749 1 40.05 ? C3B HEM 500 B 1 HETATM 18 C C4B HEM . . . H 2 43.067 -15.78 -3.685 1 40.99 ? C4B HEM 500 B 1 HETATM 19 C CMB HEM . . . H 2 39.959 -15.382 -1.679 1 40.89 ? CMB HEM 500 B 1 HETATM 20 C CAB HEM . . . H 2 40.969 -16.942 -4.448 1 38.45 ? CAB HEM 500 B 1 HETATM 21 C CBB HEM . . . H 2 39.459 -17.162 -4.492 1 34.45 ? CBB HEM 500 B 1 HETATM 22 C C1C HEM . . . H 2 45.049 -15.808 -5.064 1 44.96 ? C1C HEM 500 B 1 HETATM 23 C C2C HEM . . . H 2 45.695 -15.971 -6.218 1 49.27 ? C2C HEM 500 B 1 HETATM 24 C C3C HEM . . . H 2 47.102 -15.653 -5.881 1 49.67 ? C3C HEM 500 B 1 HETATM 25 C C4C HEM . . . H 2 47.137 -15.493 -4.487 1 50.86 ? C4C HEM 500 B 1 HETATM 26 C CMC HEM . . . H 2 45.289 -16.877 -7.38 1 52.15 ? CMC HEM 500 B 1 HETATM 27 C CAC HEM . . . H 2 48.261 -15.975 -6.762 1 54.02 ? CAC HEM 500 B 1 HETATM 28 C CBC HEM . . . H 2 48.581 -15.22 -7.813 1 57.82 ? CBC HEM 500 B 1 HETATM 29 C C1D HEM . . . H 2 48.07 -13.757 -3.001 1 48.76 ? C1D HEM 500 B 1 HETATM 30 C C2D HEM . . . H 2 49.27 -13.1 -2.406 1 45.36 ? C2D HEM 500 B 1 HETATM 31 C C3D HEM . . . H 2 48.796 -12.201 -1.547 1 47.66 ? C3D HEM 500 B 1 HETATM 32 C C4D HEM . . . H 2 47.421 -12.715 -1.216 1 49.95 ? C4D HEM 500 B 1 HETATM 33 C CMD HEM . . . H 2 50.65 -13.208 -2.957 1 47.23 ? CMD HEM 500 B 1 HETATM 34 C CAD HEM . . . H 2 49.575 -11.108 -0.83 1 54.05 ? CAD HEM 500 B 1 HETATM 35 C CBD HEM . . . H 2 49.072 -9.669 -1.133 1 53.92 ? CBD HEM 500 B 1 HETATM 36 C CGD HEM . . . H 2 50.076 -8.621 -0.739 1 55.32 ? CGD HEM 500 B 1 HETATM 37 O O1D HEM . . . H 2 50.674 -8.738 0.329 1 60.54 ? O1D HEM 500 B 1 HETATM 38 O O2D HEM . . . H 2 50.326 -7.567 -1.558 1 54.86 ? O2D HEM 500 B 1 HETATM 39 N NA HEM . . . H 2 44.369 -13.121 -0.964 1 48.31 ? NA HEM 500 B 1 HETATM 40 N NB HEM . . . H 2 43.366 -14.723 -2.817 1 34.21 ? NB HEM 500 B 1 HETATM 41 N NC HEM . . . H 2 45.832 -15.382 -4.053 1 50.55 ? NC HEM 500 B 1 HETATM 42 N ND HEM . . . H 2 47.012 -13.501 -2.257 1 43.97 ? ND HEM 500 B 1 HETATM 43 FE FE HEM . . . H 2 45.146 -14.049 -2.588 1 53.89 ? FE HEM 500 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #