data_3MZT # _model_server_result.job_id 5qszOZ3MnqjxjRmpBWWzJA _model_server_result.datetime_utc '2024-11-19 08:37:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3mzt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":100}' # _entry.id 3MZT # _exptl.entry_id 3MZT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 283.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3MZT _cell.length_a 92.891 _cell.length_b 116.592 _cell.length_c 66.317 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3MZT _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,P 1 1 B,H,I,Q 2 1 C,J,R 3 1 D,K,L,S 4 1 E,M,T 5 1 F,N,O,U 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 K N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 25 1_555 A SG CYS 81 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 C SG CYS 26 C CYS 25 1_555 C SG CYS 81 C CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 D SG CYS 26 D CYS 25 1_555 D SG CYS 81 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf5 E SG CYS 26 E CYS 25 1_555 E SG CYS 81 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf6 F SG CYS 26 F CYS 25 1_555 F SG CYS 81 F CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 A N MET 1 A MET 0 1_555 G CU CU . A CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc2 A O ILE 2 A ILE 1 1_555 G CU CU . A CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? metalc ? metalc3 A N ILE 2 A ILE 1 1_555 G CU CU . A CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc4 A NE2 HIS 32 A HIS 31 1_555 G CU CU . A CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc5 B N MET 1 B MET 0 1_555 I CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc6 B O ILE 2 B ILE 1 1_555 I CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc7 B N ILE 2 B ILE 1 1_555 I CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc8 B NE2 HIS 32 B HIS 31 1_555 I CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc9 C N MET 1 C MET 0 1_555 J CU CU . C CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc10 C O ILE 2 C ILE 1 1_555 J CU CU . C CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc11 C N ILE 2 C ILE 1 1_555 J CU CU . C CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc12 C NE2 HIS 32 C HIS 31 1_555 J CU CU . C CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc13 D N MET 1 D MET 0 1_555 L CU CU . D CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc14 D O ILE 2 D ILE 1 1_555 L CU CU . D CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc15 D N ILE 2 D ILE 1 1_555 L CU CU . D CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc16 D NE2 HIS 32 D HIS 31 1_555 L CU CU . D CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc17 E N MET 1 E MET 0 1_555 M CU CU . E CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc18 E O ILE 2 E ILE 1 1_555 M CU CU . E CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc19 E N ILE 2 E ILE 1 1_555 M CU CU . E CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc20 E NE2 HIS 32 E HIS 31 1_555 M CU CU . E CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? metalc ? metalc21 F N MET 1 F MET 0 1_555 N CU CU . F CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc22 F O ILE 2 F ILE 1 1_555 N CU CU . F CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc23 F N ILE 2 F ILE 1 1_555 N CU CU . F CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc24 F NE2 HIS 32 F HIS 31 1_555 N CU CU . F CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C17 H19 N2 S 1' _chem_comp.formula_weight 283.411 _chem_comp.id TFX _chem_comp.mon_nstd_flag . _chem_comp.name 2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Thioflavin T' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C8 TFX doub 290 n y N1 C9 TFX sing 291 n y N1 C17 TFX sing 292 n n S1 C8 TFX sing 293 n y S1 C10 TFX sing 294 n y C2 N2 TFX sing 295 n n C2 C3 TFX doub 296 n y C2 C7 TFX sing 297 n y N2 C15 TFX sing 298 n n N2 C16 TFX sing 299 n n C3 C4 TFX sing 300 n y C4 C5 TFX doub 301 n y C5 C6 TFX sing 302 n y C5 C8 TFX sing 303 n y C6 C7 TFX doub 304 n y C9 C10 TFX doub 305 n y C9 C14 TFX sing 306 n y C10 C11 TFX sing 307 n y C11 C12 TFX doub 308 n y C12 C13 TFX sing 309 n y C12 C18 TFX sing 310 n n C13 C14 TFX doub 311 n y C3 H3 TFX sing 312 n n C4 H4 TFX sing 313 n n C6 H6 TFX sing 314 n n C7 H7 TFX sing 315 n n C11 H11 TFX sing 316 n n C13 H13 TFX sing 317 n n C14 H14 TFX sing 318 n n C15 H15 TFX sing 319 n n C15 H15A TFX sing 320 n n C15 H15B TFX sing 321 n n C16 H16 TFX sing 322 n n C16 H16A TFX sing 323 n n C16 H16B TFX sing 324 n n C17 H17 TFX sing 325 n n C17 H17A TFX sing 326 n n C17 H17B TFX sing 327 n n C18 H18 TFX sing 328 n n C18 H18A TFX sing 329 n n C18 H18B TFX sing 330 n n # _atom_sites.entry_id 3MZT _atom_sites.fract_transf_matrix[1][1] 0.010765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008577 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015079 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CU A 1 201 201 CU CU . H 3 TFX B 1 100 1 TFX TFX . I 2 CU B 1 201 201 CU CU . J 2 CU C 1 201 201 CU CU . K 3 TFX D 1 100 1 TFX TFX . L 2 CU D 1 201 201 CU CU . M 2 CU E 1 201 201 CU CU . N 2 CU F 1 201 201 CU CU . O 3 TFX F 1 100 1 TFX TFX . P 4 HOH A 1 100 1 HOH HOH . P 4 HOH A 2 101 8 HOH HOH . P 4 HOH A 3 102 10 HOH HOH . P 4 HOH A 4 103 12 HOH HOH . P 4 HOH A 5 104 16 HOH HOH . P 4 HOH A 6 105 17 HOH HOH . P 4 HOH A 7 106 23 HOH HOH . P 4 HOH A 8 107 38 HOH HOH . P 4 HOH A 9 108 42 HOH HOH . P 4 HOH A 10 109 46 HOH HOH . Q 4 HOH B 1 101 6 HOH HOH . Q 4 HOH B 2 102 18 HOH HOH . Q 4 HOH B 3 103 21 HOH HOH . Q 4 HOH B 4 104 26 HOH HOH . Q 4 HOH B 5 105 30 HOH HOH . Q 4 HOH B 6 106 39 HOH HOH . Q 4 HOH B 7 107 44 HOH HOH . Q 4 HOH B 8 108 50 HOH HOH . Q 4 HOH B 9 109 54 HOH HOH . Q 4 HOH B 10 110 55 HOH HOH . R 4 HOH C 1 100 22 HOH HOH . R 4 HOH C 2 101 49 HOH HOH . S 4 HOH D 1 101 2 HOH HOH . S 4 HOH D 2 102 5 HOH HOH . S 4 HOH D 3 103 13 HOH HOH . S 4 HOH D 4 104 29 HOH HOH . S 4 HOH D 5 105 31 HOH HOH . S 4 HOH D 6 106 33 HOH HOH . S 4 HOH D 7 107 35 HOH HOH . S 4 HOH D 8 108 40 HOH HOH . S 4 HOH D 9 109 41 HOH HOH . S 4 HOH D 10 110 43 HOH HOH . S 4 HOH D 11 111 47 HOH HOH . S 4 HOH D 12 112 51 HOH HOH . T 4 HOH E 1 100 3 HOH HOH . T 4 HOH E 2 101 7 HOH HOH . T 4 HOH E 3 102 9 HOH HOH . T 4 HOH E 4 103 14 HOH HOH . T 4 HOH E 5 104 15 HOH HOH . T 4 HOH E 6 105 19 HOH HOH . T 4 HOH E 7 106 20 HOH HOH . T 4 HOH E 8 107 27 HOH HOH . T 4 HOH E 9 108 28 HOH HOH . T 4 HOH E 10 109 37 HOH HOH . U 4 HOH F 1 101 4 HOH HOH . U 4 HOH F 2 102 11 HOH HOH . U 4 HOH F 3 103 24 HOH HOH . U 4 HOH F 4 104 25 HOH HOH . U 4 HOH F 5 105 34 HOH HOH . U 4 HOH F 6 106 52 HOH HOH . U 4 HOH F 7 107 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 TFX . A . K 3 -22.857 8.436 -39.789 0.5 72.82 ? N1 TFX 100 D 1 HETATM 2 N N1 TFX . B . K 3 -24.614 6.592 -39.77 0.5 83.98 ? N1 TFX 100 D 1 HETATM 3 S S1 TFX . A . K 3 -24.271 6.288 -40.332 0.5 78.24 ? S1 TFX 100 D 1 HETATM 4 S S1 TFX . B . K 3 -23.188 8.743 -40.29 0.5 82.57 ? S1 TFX 100 D 1 HETATM 5 C C2 TFX . A . K 3 -22.918 7.297 -45.528 0.5 115.1 ? C2 TFX 100 D 1 HETATM 6 C C2 TFX . B . K 3 -24.509 7.549 -45.507 0.5 109.03 ? C2 TFX 100 D 1 HETATM 7 N N2 TFX . A . K 3 -22.715 7.187 -46.979 0.5 117.85 ? N2 TFX 100 D 1 HETATM 8 N N2 TFX . B . K 3 -24.696 7.585 -46.965 0.5 120.48 ? N2 TFX 100 D 1 HETATM 9 C C3 TFX . A . K 3 -24.246 7.367 -44.968 0.5 115.91 ? C3 TFX 100 D 1 HETATM 10 C C3 TFX . B . K 3 -23.192 7.491 -44.919 0.5 101.51 ? C3 TFX 100 D 1 HETATM 11 C C4 TFX . A . K 3 -24.437 7.473 -43.517 0.5 101.76 ? C4 TFX 100 D 1 HETATM 12 C C4 TFX . B . K 3 -23.041 7.463 -43.46 0.5 90.5 ? C4 TFX 100 D 1 HETATM 13 C C5 TFX . A . K 3 -23.217 7.516 -42.575 0.5 78.33 ? C5 TFX 100 D 1 HETATM 14 C C5 TFX . B . K 3 -24.282 7.51 -42.539 0.5 76.5 ? C5 TFX 100 D 1 HETATM 15 C C6 TFX . A . K 3 -21.849 7.438 -43.187 0.5 79.89 ? C6 TFX 100 D 1 HETATM 16 C C6 TFX . B . K 3 -25.644 7.551 -43.177 0.5 93.3 ? C6 TFX 100 D 1 HETATM 17 C C7 TFX . A . K 3 -21.646 7.333 -44.574 0.5 99.61 ? C7 TFX 100 D 1 HETATM 18 C C7 TFX . B . K 3 -25.801 7.583 -44.574 0.5 115.39 ? C7 TFX 100 D 1 HETATM 19 C C8 TFX . A . K 3 -23.299 7.625 -41.019 0.5 76.56 ? C8 TFX 100 D 1 HETATM 20 C C8 TFX . B . K 3 -24.172 7.428 -40.984 0.5 81.03 ? C8 TFX 100 D 1 HETATM 21 C C9 TFX . A . K 3 -23.396 7.828 -38.416 0.5 72 ? C9 TFX 100 D 1 HETATM 22 C C9 TFX . B . K 3 -24.063 7.166 -38.388 0.5 80.93 ? C9 TFX 100 D 1 HETATM 23 C C10 TFX . A . K 3 -24.249 6.537 -38.683 0.5 69.82 ? C10 TFX 100 D 1 HETATM 24 C C10 TFX . B . K 3 -23.207 8.454 -38.643 0.5 72.22 ? C10 TFX 100 D 1 HETATM 25 C C11 TFX . A . K 3 -24.816 5.847 -37.598 0.5 70.28 ? C11 TFX 100 D 1 HETATM 26 C C11 TFX . B . K 3 -22.642 9.107 -37.546 0.5 76.41 ? C11 TFX 100 D 1 HETATM 27 C C12 TFX . A . K 3 -24.6 6.35 -36.192 0.5 75.68 ? C12 TFX 100 D 1 HETATM 28 C C12 TFX . B . K 3 -22.849 8.576 -36.147 0.5 71.18 ? C12 TFX 100 D 1 HETATM 29 C C13 TFX . A . K 3 -23.811 7.547 -35.95 0.5 75.89 ? C13 TFX 100 D 1 HETATM 30 C C13 TFX . B . K 3 -23.641 7.38 -35.915 0.5 79.06 ? C13 TFX 100 D 1 HETATM 31 C C14 TFX . A . K 3 -23.198 8.3 -37.103 0.5 71.21 ? C14 TFX 100 D 1 HETATM 32 C C14 TFX . B . K 3 -24.262 6.663 -37.081 0.5 72.57 ? C14 TFX 100 D 1 HETATM 33 C C15 TFX . A . K 3 -23.861 7.155 -47.861 0.5 98.84 ? C15 TFX 100 D 1 HETATM 34 C C15 TFX . B . K 3 -23.555 7.544 -47.85 0.5 113.9 ? C15 TFX 100 D 1 HETATM 35 C C16 TFX . A . K 3 -21.372 7.114 -47.523 0.5 127.97 ? C16 TFX 100 D 1 HETATM 36 C C16 TFX . B . K 3 -26.033 7.644 -47.518 0.5 128.37 ? C16 TFX 100 D 1 HETATM 37 C C17 TFX . A . K 3 -22.06 9.607 -39.908 0.5 91.39 ? C17 TFX 100 D 1 HETATM 38 C C17 TFX . B . K 3 -25.42 5.428 -39.908 0.5 98.02 ? C17 TFX 100 D 1 HETATM 39 C C18 TFX . A . K 3 -25.17 5.666 -35.029 0.5 75.14 ? C18 TFX 100 D 1 HETATM 40 C C18 TFX . B . K 3 -22.27 9.236 -34.97 0.5 69.53 ? C18 TFX 100 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 40 #