data_3N10 # _model_server_result.job_id Bgd2KF8RSwyN3GZwMftPQw _model_server_result.datetime_utc '2024-11-07 07:44:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n10 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":181}' # _entry.id 3N10 # _exptl.entry_id 3N10 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.71 _cell.angle_gamma 90 _cell.entry_id 3N10 _cell.length_a 64.477 _cell.length_b 38.124 _cell.length_c 80.658 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N10 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 10 A GLU 10 1_555 D MN MN . A MN 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc2 A OE2 GLU 10 A GLU 10 1_555 E MN MN . A MN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc3 A NE2 HIS 122 A HIS 122 1_555 E MN MN . A MN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc4 A OE1 GLU 136 A GLU 136 1_555 D MN MN . A MN 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc5 C O2P CMP . A CMP 181 1_555 D MN MN . A MN 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc6 C O2' CMP . A CMP 181 1_555 E MN MN . A MN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc7 C O3' CMP . A CMP 181 1_555 E MN MN . A MN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc8 E MN MN . A MN 183 1_555 J O HOH . A HOH 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc9 B OE1 GLU 10 B GLU 10 1_555 H MN MN . B MN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc10 B NE2 HIS 122 B HIS 122 1_555 H MN MN . B MN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc11 G O3' CMP . B CMP 181 1_555 H MN MN . B MN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc12 G O2' CMP . B CMP 181 1_555 H MN MN . B MN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 3N10 _atom_sites.fract_transf_matrix[1][1] 0.015509 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002376 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02623 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012543 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CMP A 1 181 181 CMP CMP . D 3 MN A 1 182 182 MN MN . E 3 MN A 1 183 183 MN MN . F 4 SO4 A 1 185 185 SO4 SO4 . G 2 CMP B 1 181 181 CMP CMP . H 3 MN B 1 183 183 MN MN . I 4 SO4 B 1 185 185 SO4 SO4 . J 5 HOH A 1 184 183 HOH HOH . J 5 HOH A 2 186 186 HOH HOH . J 5 HOH A 3 187 187 HOH HOH . J 5 HOH A 4 190 190 HOH HOH . J 5 HOH A 5 193 193 HOH HOH . J 5 HOH A 6 203 203 HOH HOH . J 5 HOH A 7 205 205 HOH HOH . J 5 HOH A 8 209 209 HOH HOH . J 5 HOH A 9 210 210 HOH HOH . J 5 HOH A 10 215 215 HOH HOH . J 5 HOH A 11 218 218 HOH HOH . J 5 HOH A 12 219 219 HOH HOH . J 5 HOH A 13 221 221 HOH HOH . J 5 HOH A 14 225 225 HOH HOH . J 5 HOH A 15 227 227 HOH HOH . J 5 HOH A 16 229 229 HOH HOH . J 5 HOH A 17 234 234 HOH HOH . J 5 HOH A 18 235 235 HOH HOH . J 5 HOH A 19 236 236 HOH HOH . J 5 HOH A 20 237 237 HOH HOH . J 5 HOH A 21 240 240 HOH HOH . J 5 HOH A 22 241 241 HOH HOH . J 5 HOH A 23 242 242 HOH HOH . J 5 HOH A 24 243 243 HOH HOH . J 5 HOH A 25 244 244 HOH HOH . J 5 HOH A 26 245 245 HOH HOH . J 5 HOH A 27 246 246 HOH HOH . J 5 HOH A 28 247 247 HOH HOH . J 5 HOH A 29 251 251 HOH HOH . J 5 HOH A 30 252 252 HOH HOH . J 5 HOH A 31 253 253 HOH HOH . J 5 HOH A 32 255 255 HOH HOH . J 5 HOH A 33 260 260 HOH HOH . J 5 HOH A 34 263 263 HOH HOH . J 5 HOH A 35 264 264 HOH HOH . J 5 HOH A 36 266 266 HOH HOH . J 5 HOH A 37 269 269 HOH HOH . J 5 HOH A 38 271 271 HOH HOH . J 5 HOH A 39 273 273 HOH HOH . J 5 HOH A 40 274 274 HOH HOH . J 5 HOH A 41 275 275 HOH HOH . J 5 HOH A 42 277 277 HOH HOH . J 5 HOH A 43 278 278 HOH HOH . J 5 HOH A 44 281 281 HOH HOH . J 5 HOH A 45 283 283 HOH HOH . J 5 HOH A 46 286 286 HOH HOH . J 5 HOH A 47 290 290 HOH HOH . J 5 HOH A 48 292 292 HOH HOH . J 5 HOH A 49 297 297 HOH HOH . J 5 HOH A 50 301 301 HOH HOH . J 5 HOH A 51 302 302 HOH HOH . J 5 HOH A 52 304 304 HOH HOH . J 5 HOH A 53 305 305 HOH HOH . J 5 HOH A 54 307 307 HOH HOH . J 5 HOH A 55 308 308 HOH HOH . J 5 HOH A 56 309 309 HOH HOH . J 5 HOH A 57 313 313 HOH HOH . J 5 HOH A 58 314 314 HOH HOH . J 5 HOH A 59 317 317 HOH HOH . J 5 HOH A 60 319 319 HOH HOH . J 5 HOH A 61 322 322 HOH HOH . J 5 HOH A 62 323 323 HOH HOH . J 5 HOH A 63 324 324 HOH HOH . J 5 HOH A 64 328 328 HOH HOH . J 5 HOH A 65 331 331 HOH HOH . J 5 HOH A 66 334 334 HOH HOH . J 5 HOH A 67 335 335 HOH HOH . J 5 HOH A 68 336 336 HOH HOH . J 5 HOH A 69 337 337 HOH HOH . J 5 HOH A 70 338 338 HOH HOH . J 5 HOH A 71 339 339 HOH HOH . J 5 HOH A 72 352 352 HOH HOH . J 5 HOH A 73 353 353 HOH HOH . J 5 HOH A 74 354 354 HOH HOH . J 5 HOH A 75 362 362 HOH HOH . J 5 HOH A 76 363 363 HOH HOH . J 5 HOH A 77 364 364 HOH HOH . J 5 HOH A 78 365 365 HOH HOH . J 5 HOH A 79 369 369 HOH HOH . J 5 HOH A 80 370 370 HOH HOH . J 5 HOH A 81 371 371 HOH HOH . J 5 HOH A 82 372 372 HOH HOH . K 5 HOH B 1 184 184 HOH HOH . K 5 HOH B 2 186 186 HOH HOH . K 5 HOH B 3 188 188 HOH HOH . K 5 HOH B 4 189 189 HOH HOH . K 5 HOH B 5 192 192 HOH HOH . K 5 HOH B 6 195 195 HOH HOH . K 5 HOH B 7 196 196 HOH HOH . K 5 HOH B 8 198 198 HOH HOH . K 5 HOH B 9 199 199 HOH HOH . K 5 HOH B 10 200 200 HOH HOH . K 5 HOH B 11 201 201 HOH HOH . K 5 HOH B 12 202 202 HOH HOH . K 5 HOH B 13 204 204 HOH HOH . K 5 HOH B 14 206 206 HOH HOH . K 5 HOH B 15 207 207 HOH HOH . K 5 HOH B 16 208 208 HOH HOH . K 5 HOH B 17 211 211 HOH HOH . K 5 HOH B 18 212 212 HOH HOH . K 5 HOH B 19 213 213 HOH HOH . K 5 HOH B 20 214 214 HOH HOH . K 5 HOH B 21 216 216 HOH HOH . K 5 HOH B 22 220 220 HOH HOH . K 5 HOH B 23 222 222 HOH HOH . K 5 HOH B 24 223 223 HOH HOH . K 5 HOH B 25 224 224 HOH HOH . K 5 HOH B 26 226 226 HOH HOH . K 5 HOH B 27 228 228 HOH HOH . K 5 HOH B 28 231 231 HOH HOH . K 5 HOH B 29 232 232 HOH HOH . K 5 HOH B 30 233 233 HOH HOH . K 5 HOH B 31 238 238 HOH HOH . K 5 HOH B 32 239 239 HOH HOH . K 5 HOH B 33 249 249 HOH HOH . K 5 HOH B 34 250 250 HOH HOH . K 5 HOH B 35 254 254 HOH HOH . K 5 HOH B 36 256 256 HOH HOH . K 5 HOH B 37 257 257 HOH HOH . K 5 HOH B 38 259 259 HOH HOH . K 5 HOH B 39 261 261 HOH HOH . K 5 HOH B 40 265 265 HOH HOH . K 5 HOH B 41 267 267 HOH HOH . K 5 HOH B 42 268 268 HOH HOH . K 5 HOH B 43 270 270 HOH HOH . K 5 HOH B 44 272 272 HOH HOH . K 5 HOH B 45 279 279 HOH HOH . K 5 HOH B 46 282 282 HOH HOH . K 5 HOH B 47 285 285 HOH HOH . K 5 HOH B 48 287 287 HOH HOH . K 5 HOH B 49 288 288 HOH HOH . K 5 HOH B 50 289 289 HOH HOH . K 5 HOH B 51 294 294 HOH HOH . K 5 HOH B 52 295 295 HOH HOH . K 5 HOH B 53 298 298 HOH HOH . K 5 HOH B 54 299 299 HOH HOH . K 5 HOH B 55 300 300 HOH HOH . K 5 HOH B 56 303 303 HOH HOH . K 5 HOH B 57 306 306 HOH HOH . K 5 HOH B 58 311 311 HOH HOH . K 5 HOH B 59 312 312 HOH HOH . K 5 HOH B 60 316 316 HOH HOH . K 5 HOH B 61 318 318 HOH HOH . K 5 HOH B 62 325 325 HOH HOH . K 5 HOH B 63 326 326 HOH HOH . K 5 HOH B 64 327 327 HOH HOH . K 5 HOH B 65 329 329 HOH HOH . K 5 HOH B 66 330 330 HOH HOH . K 5 HOH B 67 332 332 HOH HOH . K 5 HOH B 68 333 333 HOH HOH . K 5 HOH B 69 340 340 HOH HOH . K 5 HOH B 70 341 341 HOH HOH . K 5 HOH B 71 342 342 HOH HOH . K 5 HOH B 72 343 343 HOH HOH . K 5 HOH B 73 344 344 HOH HOH . K 5 HOH B 74 345 345 HOH HOH . K 5 HOH B 75 346 346 HOH HOH . K 5 HOH B 76 347 347 HOH HOH . K 5 HOH B 77 348 348 HOH HOH . K 5 HOH B 78 349 349 HOH HOH . K 5 HOH B 79 350 350 HOH HOH . K 5 HOH B 80 351 351 HOH HOH . K 5 HOH B 81 355 355 HOH HOH . K 5 HOH B 82 356 356 HOH HOH . K 5 HOH B 83 357 357 HOH HOH . K 5 HOH B 84 358 358 HOH HOH . K 5 HOH B 85 359 359 HOH HOH . K 5 HOH B 86 360 360 HOH HOH . K 5 HOH B 87 361 361 HOH HOH . K 5 HOH B 88 367 367 HOH HOH . K 5 HOH B 89 368 368 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . C 2 -3.691 2.114 13.018 1 43.78 ? P CMP 181 A 1 HETATM 2 O O1P CMP . . . C 2 -3.895 3.59 13.208 1 39.47 ? O1P CMP 181 A 1 HETATM 3 O O2P CMP . . . C 2 -3.494 1.797 11.551 1 42.63 ? O2P CMP 181 A 1 HETATM 4 O O5' CMP . . . C 2 -2.424 1.64 13.914 1 42.71 ? O5' CMP 181 A 1 HETATM 5 C C5' CMP . . . C 2 -2.55 1.498 15.328 1 42.7 ? C5' CMP 181 A 1 HETATM 6 C C4' CMP . . . C 2 -3.757 0.615 15.558 1 43.11 ? C4' CMP 181 A 1 HETATM 7 O O4' CMP . . . C 2 -4.047 0.384 16.929 1 44.35 ? O4' CMP 181 A 1 HETATM 8 C C3' CMP . . . C 2 -5.032 1.261 15.022 1 44.26 ? C3' CMP 181 A 1 HETATM 9 O O3' CMP . . . C 2 -4.981 1.288 13.596 1 42.68 ? O3' CMP 181 A 1 HETATM 10 C C2' CMP . . . C 2 -6.105 0.411 15.681 1 45.97 ? C2' CMP 181 A 1 HETATM 11 O O2' CMP . . . C 2 -6.369 -0.776 14.915 1 47.47 ? O2' CMP 181 A 1 HETATM 12 C C1' CMP . . . C 2 -5.439 0.039 17.017 1 47.34 ? C1' CMP 181 A 1 HETATM 13 N N9 CMP . . . C 2 -6.037 0.718 18.202 1 47.37 ? N9 CMP 181 A 1 HETATM 14 C C8 CMP . . . C 2 -5.968 0.229 19.452 1 47.3 ? C8 CMP 181 A 1 HETATM 15 N N7 CMP . . . C 2 -6.597 1.04 20.335 1 48.2 ? N7 CMP 181 A 1 HETATM 16 C C5 CMP . . . C 2 -7.086 2.084 19.643 1 47.07 ? C5 CMP 181 A 1 HETATM 17 C C6 CMP . . . C 2 -7.864 3.302 19.968 1 47.2 ? C6 CMP 181 A 1 HETATM 18 N N6 CMP . . . C 2 -8.234 3.553 21.25 1 47.97 ? N6 CMP 181 A 1 HETATM 19 N N1 CMP . . . C 2 -8.176 4.149 18.951 1 48.26 ? N1 CMP 181 A 1 HETATM 20 C C2 CMP . . . C 2 -7.811 3.889 17.675 1 47.87 ? C2 CMP 181 A 1 HETATM 21 N N3 CMP . . . C 2 -7.112 2.792 17.3 1 48.09 ? N3 CMP 181 A 1 HETATM 22 C C4 CMP . . . C 2 -6.72 1.868 18.228 1 47.96 ? C4 CMP 181 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #