data_3N1X # _model_server_result.job_id 2ARnYpFR6q6Xjiz95fqRlw _model_server_result.datetime_utc '2025-07-31 05:24:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n1x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":499}' # _entry.id 3N1X # _exptl.entry_id 3N1X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3N1X _cell.length_a 183.294 _cell.length_b 183.294 _cell.length_c 68.128 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N1X _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? hexameric 6 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1,2 A,B,C,D,E,F,G,H,I,J,K 2 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'crystal symmetry operation' 2_565 -y,x-y+1,z+1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -91.647 158.73726 22.709333 2 'crystal symmetry operation' 6_565 -x,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 -91.647 158.73726 22.709333 3 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 104 A GLU 104 1_555 D FE FE . A FE 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc2 A OE1 GLU 134 A GLU 134 1_555 D FE FE . A FE 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc3 A OE2 GLU 134 A GLU 134 1_555 E FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc4 A ND1 HIS 137 A HIS 137 1_555 D FE FE . A FE 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc5 A OE2 GLU 197 A GLU 197 1_555 E FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc6 A OE2 GLU 231 A GLU 231 1_555 E FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc7 A NE2 HIS 234 A HIS 234 1_555 E FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc8 D FE FE . A FE 499 1_555 F O OH . A OH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc9 D FE FE . A FE 499 1_555 G O1 EDO . A EDO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc10 D FE FE . A FE 499 1_555 I O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc11 E FE FE . A FE 500 1_555 F O OH . A OH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc12 E FE FE . A FE 500 1_555 G O1 EDO . A EDO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3N1X _atom_sites.fract_transf_matrix[1][1] 0.005456 _atom_sites.fract_transf_matrix[1][2] 0.00315 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014678 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FE A 1 499 1 FE FE . E 4 FE A 1 500 2 FE FE . F 5 OH A 1 501 1 OH OH . G 6 EDO A 1 502 1 EDO EDO . H 7 SO4 B 1 331 1 SO4 SO4 . I 8 HOH A 1 503 1 HOH HOH . I 8 HOH A 2 504 2 HOH HOH . I 8 HOH A 3 505 7 HOH HOH . I 8 HOH A 4 506 8 HOH HOH . I 8 HOH A 5 507 9 HOH HOH . I 8 HOH A 6 508 10 HOH HOH . I 8 HOH A 7 509 11 HOH HOH . I 8 HOH A 8 510 12 HOH HOH . I 8 HOH A 9 511 13 HOH HOH . I 8 HOH A 10 512 14 HOH HOH . I 8 HOH A 11 513 17 HOH HOH . I 8 HOH A 12 514 18 HOH HOH . I 8 HOH A 13 515 19 HOH HOH . I 8 HOH A 14 516 22 HOH HOH . I 8 HOH A 15 517 23 HOH HOH . I 8 HOH A 16 518 24 HOH HOH . I 8 HOH A 17 519 26 HOH HOH . I 8 HOH A 18 520 27 HOH HOH . I 8 HOH A 19 521 28 HOH HOH . I 8 HOH A 20 522 30 HOH HOH . I 8 HOH A 21 523 34 HOH HOH . I 8 HOH A 22 524 36 HOH HOH . I 8 HOH A 23 525 37 HOH HOH . I 8 HOH A 24 526 39 HOH HOH . I 8 HOH A 25 527 40 HOH HOH . I 8 HOH A 26 528 41 HOH HOH . I 8 HOH A 27 529 43 HOH HOH . I 8 HOH A 28 530 44 HOH HOH . I 8 HOH A 29 531 47 HOH HOH . I 8 HOH A 30 532 49 HOH HOH . I 8 HOH A 31 533 51 HOH HOH . I 8 HOH A 32 534 52 HOH HOH . I 8 HOH A 33 535 53 HOH HOH . I 8 HOH A 34 536 58 HOH HOH . I 8 HOH A 35 537 59 HOH HOH . I 8 HOH A 36 538 60 HOH HOH . I 8 HOH A 37 539 62 HOH HOH . I 8 HOH A 38 540 64 HOH HOH . I 8 HOH A 39 541 65 HOH HOH . I 8 HOH A 40 542 67 HOH HOH . I 8 HOH A 41 543 68 HOH HOH . I 8 HOH A 42 544 70 HOH HOH . I 8 HOH A 43 545 72 HOH HOH . I 8 HOH A 44 546 73 HOH HOH . I 8 HOH A 45 547 76 HOH HOH . I 8 HOH A 46 548 79 HOH HOH . I 8 HOH A 47 549 80 HOH HOH . I 8 HOH A 48 550 84 HOH HOH . I 8 HOH A 49 551 86 HOH HOH . I 8 HOH A 50 552 87 HOH HOH . I 8 HOH A 51 553 89 HOH HOH . I 8 HOH A 52 554 93 HOH HOH . I 8 HOH A 53 555 95 HOH HOH . I 8 HOH A 54 556 97 HOH HOH . I 8 HOH A 55 557 99 HOH HOH . I 8 HOH A 56 558 100 HOH HOH . I 8 HOH A 57 559 101 HOH HOH . I 8 HOH A 58 560 102 HOH HOH . I 8 HOH A 59 561 103 HOH HOH . I 8 HOH A 60 562 104 HOH HOH . I 8 HOH A 61 563 105 HOH HOH . I 8 HOH A 62 564 109 HOH HOH . I 8 HOH A 63 565 112 HOH HOH . I 8 HOH A 64 566 114 HOH HOH . I 8 HOH A 65 567 117 HOH HOH . I 8 HOH A 66 568 118 HOH HOH . I 8 HOH A 67 569 119 HOH HOH . I 8 HOH A 68 570 127 HOH HOH . I 8 HOH A 69 571 132 HOH HOH . I 8 HOH A 70 572 133 HOH HOH . I 8 HOH A 71 573 136 HOH HOH . I 8 HOH A 72 574 138 HOH HOH . I 8 HOH A 73 575 140 HOH HOH . J 8 HOH B 1 332 3 HOH HOH . J 8 HOH B 2 333 4 HOH HOH . J 8 HOH B 3 334 5 HOH HOH . J 8 HOH B 4 335 6 HOH HOH . J 8 HOH B 5 336 15 HOH HOH . J 8 HOH B 6 337 20 HOH HOH . J 8 HOH B 7 338 21 HOH HOH . J 8 HOH B 8 339 25 HOH HOH . J 8 HOH B 9 340 29 HOH HOH . J 8 HOH B 10 341 31 HOH HOH . J 8 HOH B 11 342 32 HOH HOH . J 8 HOH B 12 343 33 HOH HOH . J 8 HOH B 13 344 35 HOH HOH . J 8 HOH B 14 345 38 HOH HOH . J 8 HOH B 15 346 42 HOH HOH . J 8 HOH B 16 347 45 HOH HOH . J 8 HOH B 17 348 46 HOH HOH . J 8 HOH B 18 349 48 HOH HOH . J 8 HOH B 19 350 50 HOH HOH . J 8 HOH B 20 351 54 HOH HOH . J 8 HOH B 21 352 55 HOH HOH . J 8 HOH B 22 353 56 HOH HOH . J 8 HOH B 23 354 57 HOH HOH . J 8 HOH B 24 355 61 HOH HOH . J 8 HOH B 25 356 66 HOH HOH . J 8 HOH B 26 357 69 HOH HOH . J 8 HOH B 27 358 71 HOH HOH . J 8 HOH B 28 359 74 HOH HOH . J 8 HOH B 29 360 75 HOH HOH . J 8 HOH B 30 361 77 HOH HOH . J 8 HOH B 31 362 78 HOH HOH . J 8 HOH B 32 363 81 HOH HOH . J 8 HOH B 33 364 82 HOH HOH . J 8 HOH B 34 365 83 HOH HOH . J 8 HOH B 35 366 85 HOH HOH . J 8 HOH B 36 367 88 HOH HOH . J 8 HOH B 37 368 90 HOH HOH . J 8 HOH B 38 369 91 HOH HOH . J 8 HOH B 39 370 92 HOH HOH . J 8 HOH B 40 371 94 HOH HOH . J 8 HOH B 41 372 96 HOH HOH . J 8 HOH B 42 373 106 HOH HOH . J 8 HOH B 43 374 108 HOH HOH . J 8 HOH B 44 375 110 HOH HOH . J 8 HOH B 45 376 111 HOH HOH . J 8 HOH B 46 377 113 HOH HOH . J 8 HOH B 47 378 115 HOH HOH . J 8 HOH B 48 379 116 HOH HOH . J 8 HOH B 49 380 120 HOH HOH . J 8 HOH B 50 381 121 HOH HOH . J 8 HOH B 51 382 122 HOH HOH . J 8 HOH B 52 383 123 HOH HOH . J 8 HOH B 53 384 124 HOH HOH . J 8 HOH B 54 385 125 HOH HOH . J 8 HOH B 55 386 126 HOH HOH . J 8 HOH B 56 387 128 HOH HOH . J 8 HOH B 57 388 129 HOH HOH . J 8 HOH B 58 389 130 HOH HOH . J 8 HOH B 59 390 134 HOH HOH . J 8 HOH B 60 391 135 HOH HOH . J 8 HOH B 61 392 137 HOH HOH . J 8 HOH B 62 393 139 HOH HOH . K 8 HOH C 1 87 16 HOH HOH . K 8 HOH C 2 88 63 HOH HOH . K 8 HOH C 3 98 98 HOH HOH . K 8 HOH C 4 107 107 HOH HOH . K 8 HOH C 5 131 131 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -20.084 _atom_site.Cartn_y -70.452 _atom_site.Cartn_z 10.587 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.53 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 499 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 69 _model_server_stats.query_time_ms 1242 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #