data_3N1Z
#
_model_server_result.job_id            ADGtvaxU_dZEVj7XiQWq0w 
_model_server_result.datetime_utc      '2024-12-26 12:44:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3n1z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":331}' 
#
_entry.id    3N1Z 
#
_exptl.entry_id    3N1Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3N1Z 
_cell.length_a            182.826 
_cell.length_b            182.826 
_cell.length_c            68.862 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3N1Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? hexameric 6 author_defined_assembly 1 
PISA trimeric 3 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M 1 1,2 
A,B,C,D,E,F,G,H,I,J,K,L,M 2 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z+2/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 91.413 158.33196 45.908 
2 'crystal symmetry operation' 6_665 -x+1,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 91.413 158.33196 22.954 
3 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 104 A GLU 104 1_555 H FE FE . A FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc2 A OE2 GLU 134 A GLU 134 1_555 H FE FE . A FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc3 A OE1 GLU 134 A GLU 134 1_555 I FE FE . A FE 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc4 A ND1 HIS 137 A HIS 137 1_555 H FE FE . A FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc5 A OE2 GLU 197 A GLU 197 1_555 I FE FE . A FE 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc6 A OE2 GLU 231 A GLU 231 1_555 I FE FE . A FE 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc7 A NE2 HIS 234 A HIS 234 1_555 I FE FE . A FE 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc8 F O1 P6G . A P6G 501 1_555 I FE FE . A FE 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc9 H FE FE . A FE 503 1_555 K O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc10 H FE FE . A FE 503 1_555 K O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc11 I FE FE . A FE 504 1_555 K O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3N1Z 
_atom_sites.fract_transf_matrix[1][1]    0.00547 
_atom_sites.fract_transf_matrix[1][2]    0.003158 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006316 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014522 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GOL A 1 499 1 GOL GOL . 
E 4 GOL A 1 500 2 GOL GOL . 
F 5 P6G A 1 501 1 P6G P6G . 
G 5 P6G A 1 502 2 P6G P6G . 
H 6 FE A 1 503 1 FE FE . 
I 6 FE A 1 504 2 FE FE . 
J 4 GOL B 1 331 3 GOL GOL . 
K 7 HOH A 1 505 1 HOH HOH . 
K 7 HOH A 2 506 2 HOH HOH . 
K 7 HOH A 3 507 4 HOH HOH . 
K 7 HOH A 4 508 7 HOH HOH . 
K 7 HOH A 5 509 9 HOH HOH . 
K 7 HOH A 6 510 11 HOH HOH . 
K 7 HOH A 7 511 14 HOH HOH . 
K 7 HOH A 8 512 15 HOH HOH . 
K 7 HOH A 9 513 18 HOH HOH . 
K 7 HOH A 10 514 19 HOH HOH . 
K 7 HOH A 11 515 20 HOH HOH . 
K 7 HOH A 12 516 21 HOH HOH . 
K 7 HOH A 13 517 22 HOH HOH . 
K 7 HOH A 14 518 23 HOH HOH . 
K 7 HOH A 15 519 30 HOH HOH . 
K 7 HOH A 16 520 33 HOH HOH . 
K 7 HOH A 17 521 35 HOH HOH . 
K 7 HOH A 18 522 38 HOH HOH . 
K 7 HOH A 19 523 40 HOH HOH . 
K 7 HOH A 20 524 43 HOH HOH . 
K 7 HOH A 21 525 45 HOH HOH . 
K 7 HOH A 22 526 50 HOH HOH . 
K 7 HOH A 23 527 52 HOH HOH . 
K 7 HOH A 24 528 54 HOH HOH . 
K 7 HOH A 25 529 56 HOH HOH . 
K 7 HOH A 26 530 57 HOH HOH . 
K 7 HOH A 27 531 63 HOH HOH . 
K 7 HOH A 28 532 64 HOH HOH . 
K 7 HOH A 29 533 65 HOH HOH . 
K 7 HOH A 30 534 67 HOH HOH . 
K 7 HOH A 31 535 68 HOH HOH . 
K 7 HOH A 32 536 71 HOH HOH . 
K 7 HOH A 33 537 74 HOH HOH . 
K 7 HOH A 34 538 75 HOH HOH . 
K 7 HOH A 35 539 77 HOH HOH . 
K 7 HOH A 36 540 78 HOH HOH . 
K 7 HOH A 37 541 81 HOH HOH . 
K 7 HOH A 38 542 82 HOH HOH . 
K 7 HOH A 39 543 84 HOH HOH . 
K 7 HOH A 40 544 85 HOH HOH . 
K 7 HOH A 41 545 86 HOH HOH . 
K 7 HOH A 42 546 87 HOH HOH . 
K 7 HOH A 43 547 88 HOH HOH . 
K 7 HOH A 44 548 89 HOH HOH . 
K 7 HOH A 45 549 91 HOH HOH . 
K 7 HOH A 46 550 97 HOH HOH . 
K 7 HOH A 47 551 98 HOH HOH . 
K 7 HOH A 48 552 99 HOH HOH . 
L 7 HOH B 1 332 3 HOH HOH . 
L 7 HOH B 2 333 5 HOH HOH . 
L 7 HOH B 3 334 6 HOH HOH . 
L 7 HOH B 4 335 8 HOH HOH . 
L 7 HOH B 5 336 10 HOH HOH . 
L 7 HOH B 6 337 12 HOH HOH . 
L 7 HOH B 7 338 13 HOH HOH . 
L 7 HOH B 8 339 16 HOH HOH . 
L 7 HOH B 9 340 17 HOH HOH . 
L 7 HOH B 10 341 24 HOH HOH . 
L 7 HOH B 11 342 25 HOH HOH . 
L 7 HOH B 12 343 26 HOH HOH . 
L 7 HOH B 13 344 27 HOH HOH . 
L 7 HOH B 14 345 29 HOH HOH . 
L 7 HOH B 15 346 31 HOH HOH . 
L 7 HOH B 16 347 32 HOH HOH . 
L 7 HOH B 17 348 34 HOH HOH . 
L 7 HOH B 18 349 37 HOH HOH . 
L 7 HOH B 19 350 39 HOH HOH . 
L 7 HOH B 20 351 41 HOH HOH . 
L 7 HOH B 21 352 42 HOH HOH . 
L 7 HOH B 22 353 44 HOH HOH . 
L 7 HOH B 23 354 47 HOH HOH . 
L 7 HOH B 24 355 48 HOH HOH . 
L 7 HOH B 25 356 49 HOH HOH . 
L 7 HOH B 26 357 51 HOH HOH . 
L 7 HOH B 27 358 53 HOH HOH . 
L 7 HOH B 28 359 55 HOH HOH . 
L 7 HOH B 29 360 58 HOH HOH . 
L 7 HOH B 30 361 59 HOH HOH . 
L 7 HOH B 31 362 60 HOH HOH . 
L 7 HOH B 32 363 62 HOH HOH . 
L 7 HOH B 33 364 66 HOH HOH . 
L 7 HOH B 34 365 69 HOH HOH . 
L 7 HOH B 35 366 70 HOH HOH . 
L 7 HOH B 36 367 72 HOH HOH . 
L 7 HOH B 37 368 73 HOH HOH . 
L 7 HOH B 38 369 76 HOH HOH . 
L 7 HOH B 39 370 79 HOH HOH . 
L 7 HOH B 40 371 80 HOH HOH . 
L 7 HOH B 41 372 93 HOH HOH . 
L 7 HOH B 42 373 94 HOH HOH . 
L 7 HOH B 43 374 96 HOH HOH . 
L 7 HOH B 44 375 100 HOH HOH . 
M 7 HOH C 1 87 28 HOH HOH . 
M 7 HOH C 2 88 36 HOH HOH . 
M 7 HOH C 3 89 46 HOH HOH . 
M 7 HOH C 4 90 90 HOH HOH . 
M 7 HOH C 5 91 61 HOH HOH . 
M 7 HOH C 6 92 92 HOH HOH . 
M 7 HOH C 7 93 83 HOH HOH . 
M 7 HOH C 8 95 95 HOH HOH . 
M 7 HOH C 9 101 101 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 4 82.925 39.197 -13.917 1 29.71 ? C1 GOL 331 B 1 
HETATM 2 O O1 GOL . . . J 4 84.172 39.803 -14.085 1 31.88 ? O1 GOL 331 B 1 
HETATM 3 C C2 GOL . . . J 4 81.734 40.054 -14.347 1 28.72 ? C2 GOL 331 B 1 
HETATM 4 O O2 GOL . . . J 4 81.915 40.488 -15.709 1 28.53 ? O2 GOL 331 B 1 
HETATM 5 C C3 GOL . . . J 4 80.45 39.272 -14.119 1 28.85 ? C3 GOL 331 B 1 
HETATM 6 O O3 GOL . . . J 4 79.275 39.959 -14.498 1 32.11 ? O3 GOL 331 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#