data_3N23 # _model_server_result.job_id 5yGAFSVwaDPTmAx0bVn0yQ _model_server_result.datetime_utc '2025-03-01 01:07:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n23 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1}' # _entry.id 3N23 # _exptl.entry_id 3N23 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 584.652 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description OUABAIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3N23 _cell.length_a 117.16 _cell.length_b 118.93 _cell.length_c 494.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N23 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H 1 1 D,E,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 100 B CYS 126 1_555 B SG CYS 123 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? disulf ? disulf2 B SG CYS 133 B CYS 159 1_555 B SG CYS 149 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? disulf ? disulf3 B SG CYS 187 B CYS 213 1_555 B SG CYS 250 B CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf4 E SG CYS 100 D CYS 126 1_555 E SG CYS 123 D CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 E SG CYS 133 D CYS 159 1_555 E SG CYS 149 D CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? disulf ? disulf6 E SG CYS 187 D CYS 213 1_555 E SG CYS 250 D CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? covale ? covale1 A C SER 344 A SER 368 1_555 A N PHD 345 A PHD 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C PHD 345 A PHD 369 1_555 A N LYS 346 A LYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 D C SER 344 C SER 368 1_555 D N PHD 345 C PHD 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 D C PHD 345 C PHD 369 1_555 D N LYS 346 C LYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? metalc ? metalc1 D OP1 PHD 345 C PHD 369 1_555 J MG MG . C MG 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc2 A OP1 PHD 345 A PHD 369 1_555 H MG MG . A MG 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc3 A OD2 ASP 686 A ASP 710 1_555 H MG MG . A MG 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc4 D O THR 347 C THR 371 1_555 J MG MG . C MG 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc5 D OD2 ASP 686 C ASP 710 1_555 J MG MG . C MG 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc6 A O THR 347 A THR 371 1_555 H MG MG . A MG 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc7 A OD1 PHD 345 A PHD 369 1_555 H MG MG . A MG 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc8 A OD2 PHD 345 A PHD 369 1_555 H MG MG . A MG 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? # _chem_comp.formula 'C29 H44 O12' _chem_comp.formula_weight 584.652 _chem_comp.id OBN _chem_comp.mon_nstd_flag . _chem_comp.name OUABAIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3N23 _atom_sites.fract_transf_matrix[1][1] 0.008535 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008408 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002024 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 OBN A 1 1 1 OBN OBN . H 5 MG A 1 1017 1 MG MG . I 4 OBN C 1 1 1 OBN OBN . J 5 MG C 1 1017 1 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OBN . . . G 4 -26.396 -19.099 74.669 1 274.69 ? C1 OBN 1 A 1 HETATM 2 C C2 OBN . . . G 4 -27.905 -19.342 74.715 1 274.69 ? C2 OBN 1 A 1 HETATM 3 C C3 OBN . . . G 4 -28.21 -20.312 75.842 1 274.69 ? C3 OBN 1 A 1 HETATM 4 C C4 OBN . . . G 4 -27.462 -21.61 75.574 1 274.69 ? C4 OBN 1 A 1 HETATM 5 C C5 OBN . . . G 4 -25.951 -21.411 75.425 1 274.69 ? C5 OBN 1 A 1 HETATM 6 C C6 OBN . . . G 4 -25.269 -22.747 75.173 1 274.69 ? C6 OBN 1 A 1 HETATM 7 C C7 OBN . . . G 4 -25.668 -23.293 73.815 1 274.69 ? C7 OBN 1 A 1 HETATM 8 C C8 OBN . . . G 4 -25.331 -22.278 72.722 1 274.69 ? C8 OBN 1 A 1 HETATM 9 C C9 OBN . . . G 4 -25.998 -20.916 72.938 1 274.69 ? C9 OBN 1 A 1 HETATM 10 C C10 OBN . . . G 4 -25.629 -20.377 74.327 1 274.69 ? C10 OBN 1 A 1 HETATM 11 C C11 OBN . . . G 4 -25.557 -20.046 71.754 1 274.69 ? C11 OBN 1 A 1 HETATM 12 C C12 OBN . . . G 4 -26.262 -20.563 70.508 1 274.69 ? C12 OBN 1 A 1 HETATM 13 C C13 OBN . . . G 4 -25.826 -21.977 70.14 1 274.69 ? C13 OBN 1 A 1 HETATM 14 C C14 OBN . . . G 4 -25.55 -22.907 71.343 1 274.69 ? C14 OBN 1 A 1 HETATM 15 C C15 OBN . . . G 4 -26.665 -23.943 71.435 1 274.69 ? C15 OBN 1 A 1 HETATM 16 C C16 OBN . . . G 4 -27.494 -23.85 70.176 1 274.69 ? C16 OBN 1 A 1 HETATM 17 C C17 OBN . . . G 4 -27.015 -22.626 69.423 1 274.69 ? C17 OBN 1 A 1 HETATM 18 C C18 OBN . . . G 4 -24.591 -21.805 69.253 1 274.69 ? C18 OBN 1 A 1 HETATM 19 C C19 OBN . . . G 4 -24.116 -20.16 74.211 1 274.69 ? C19 OBN 1 A 1 HETATM 20 C C20 OBN . . . G 4 -26.724 -23.13 68.057 1 274.69 ? C20 OBN 1 A 1 HETATM 21 C C21 OBN . . . G 4 -25.738 -24.239 67.712 1 274.69 ? C21 OBN 1 A 1 HETATM 22 C C22 OBN . . . G 4 -27.402 -22.655 67.026 1 274.69 ? C22 OBN 1 A 1 HETATM 23 C C23 OBN . . . G 4 -26.957 -23.464 65.901 1 274.69 ? C23 OBN 1 A 1 HETATM 24 C C1' OBN . . . G 4 -28.298 -20.019 78.267 1 274.69 ? C1' OBN 1 A 1 HETATM 25 C C2' OBN . . . G 4 -27.566 -19.145 79.269 1 274.69 ? C2' OBN 1 A 1 HETATM 26 C C3' OBN . . . G 4 -27.765 -17.672 78.901 1 274.69 ? C3' OBN 1 A 1 HETATM 27 C C4' OBN . . . G 4 -29.246 -17.319 78.739 1 274.69 ? C4' OBN 1 A 1 HETATM 28 C C5' OBN . . . G 4 -29.945 -18.332 77.833 1 274.69 ? C5' OBN 1 A 1 HETATM 29 C C6' OBN . . . G 4 -31.449 -18.125 77.801 1 274.69 ? C6' OBN 1 A 1 HETATM 30 O O1 OBN . . . G 4 -25.948 -18.602 75.94 1 274.69 ? O1 OBN 1 A 1 HETATM 31 O O3 OBN . . . G 4 -27.683 -19.716 77.021 1 274.69 ? O3 OBN 1 A 1 HETATM 32 O O5 OBN . . . G 4 -25.427 -20.929 76.663 1 274.69 ? O5 OBN 1 A 1 HETATM 33 O O11 OBN . . . G 4 -25.802 -18.636 71.896 1 274.69 ? O11 OBN 1 A 1 HETATM 34 O O14 OBN . . . G 4 -24.351 -23.621 71.063 1 274.69 ? O14 OBN 1 A 1 HETATM 35 O O19 OBN . . . G 4 -23.736 -18.8 73.965 1 274.69 ? O19 OBN 1 A 1 HETATM 36 O O21 OBN . . . G 4 -26.067 -24.507 66.352 1 274.69 ? O21 OBN 1 A 1 HETATM 37 O O23 OBN . . . G 4 -27.279 -23.3 64.748 1 274.69 ? O23 OBN 1 A 1 HETATM 38 O O2' OBN . . . G 4 -28.064 -19.439 80.576 1 274.69 ? O2' OBN 1 A 1 HETATM 39 O O3' OBN . . . G 4 -27.166 -16.833 79.891 1 274.69 ? O3' OBN 1 A 1 HETATM 40 O O4' OBN . . . G 4 -29.365 -16.006 78.177 1 274.69 ? O4' OBN 1 A 1 HETATM 41 O O5' OBN . . . G 4 -29.688 -19.674 78.267 1 274.69 ? O5' OBN 1 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 83 _model_server_stats.query_time_ms 1328 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 41 #