data_3N23 # _model_server_result.job_id 1et0EYfJsUSvl4JS63_Jbg _model_server_result.datetime_utc '2025-06-20 20:16:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n23 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1}' # _entry.id 3N23 # _exptl.entry_id 3N23 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 584.652 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description OUABAIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3N23 _cell.length_a 117.16 _cell.length_b 118.93 _cell.length_c 494.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N23 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H 1 1 D,E,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 100 B CYS 126 1_555 B SG CYS 123 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? disulf ? disulf2 B SG CYS 133 B CYS 159 1_555 B SG CYS 149 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? disulf ? disulf3 B SG CYS 187 B CYS 213 1_555 B SG CYS 250 B CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf4 E SG CYS 100 D CYS 126 1_555 E SG CYS 123 D CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 E SG CYS 133 D CYS 159 1_555 E SG CYS 149 D CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? disulf ? disulf6 E SG CYS 187 D CYS 213 1_555 E SG CYS 250 D CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? covale ? covale1 A C SER 344 A SER 368 1_555 A N PHD 345 A PHD 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C PHD 345 A PHD 369 1_555 A N LYS 346 A LYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 D C SER 344 C SER 368 1_555 D N PHD 345 C PHD 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 D C PHD 345 C PHD 369 1_555 D N LYS 346 C LYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? metalc ? metalc1 A OP1 PHD 345 A PHD 369 1_555 H MG MG . A MG 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc2 A OD1 PHD 345 A PHD 369 1_555 H MG MG . A MG 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc3 A OD2 PHD 345 A PHD 369 1_555 H MG MG . A MG 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc4 A O THR 347 A THR 371 1_555 H MG MG . A MG 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc5 A OD2 ASP 686 A ASP 710 1_555 H MG MG . A MG 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc6 D OP1 PHD 345 C PHD 369 1_555 J MG MG . C MG 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc7 D O THR 347 C THR 371 1_555 J MG MG . C MG 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc8 D OD2 ASP 686 C ASP 710 1_555 J MG MG . C MG 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? # _chem_comp.formula 'C29 H44 O12' _chem_comp.formula_weight 584.652 _chem_comp.id OBN _chem_comp.mon_nstd_flag . _chem_comp.name OUABAIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OBN sing 235 n n C1 C10 OBN sing 236 n n C1 O1 OBN sing 237 n n C1 H1 OBN sing 238 n n C2 C3 OBN sing 239 n n C2 H21 OBN sing 240 n n C2 H22A OBN sing 241 n n C3 C4 OBN sing 242 n n C3 O3 OBN sing 243 n n C3 H3 OBN sing 244 n n C4 C5 OBN sing 245 n n C4 H41 OBN sing 246 n n C4 H42 OBN sing 247 n n C5 C6 OBN sing 248 n n C5 C10 OBN sing 249 n n C5 O5 OBN sing 250 n n C6 C7 OBN sing 251 n n C6 H61 OBN sing 252 n n C6 H62 OBN sing 253 n n C7 C8 OBN sing 254 n n C7 H71 OBN sing 255 n n C7 H72 OBN sing 256 n n C8 C9 OBN sing 257 n n C8 C14 OBN sing 258 n n C8 H8 OBN sing 259 n n C9 C10 OBN sing 260 n n C9 C11 OBN sing 261 n n C9 H9 OBN sing 262 n n C10 C19 OBN sing 263 n n C11 C12 OBN sing 264 n n C11 O11 OBN sing 265 n n C11 H11 OBN sing 266 n n C12 C13 OBN sing 267 n n C12 H121 OBN sing 268 n n C12 H122 OBN sing 269 n n C13 C14 OBN sing 270 n n C13 C17 OBN sing 271 n n C13 C18 OBN sing 272 n n C14 C15 OBN sing 273 n n C14 O14 OBN sing 274 n n C15 C16 OBN sing 275 n n C15 H151 OBN sing 276 n n C15 H152 OBN sing 277 n n C16 C17 OBN sing 278 n n C16 H161 OBN sing 279 n n C16 H162 OBN sing 280 n n C17 C20 OBN sing 281 n n C17 H17 OBN sing 282 n n C18 H181 OBN sing 283 n n C18 H182 OBN sing 284 n n C18 H183 OBN sing 285 n n C19 O19 OBN sing 286 n n C19 H191 OBN sing 287 n n C19 H192 OBN sing 288 n n C20 C21 OBN sing 289 n n C20 C22 OBN doub 290 n n C21 O21 OBN sing 291 n n C21 H211 OBN sing 292 n n C21 H212 OBN sing 293 n n C22 C23 OBN sing 294 n n C22 H22 OBN sing 295 n n C23 O21 OBN sing 296 n n C23 O23 OBN doub 297 n n C1' C2' OBN sing 298 n n C1' O3 OBN sing 299 n n C1' O5' OBN sing 300 n n C1' H1' OBN sing 301 n n C2' C3' OBN sing 302 n n C2' O2' OBN sing 303 n n C2' H2' OBN sing 304 n n C3' C4' OBN sing 305 n n C3' O3' OBN sing 306 n n C3' H3' OBN sing 307 n n C4' C5' OBN sing 308 n n C4' O4' OBN sing 309 n n C4' H4' OBN sing 310 n n C5' C6' OBN sing 311 n n C5' O5' OBN sing 312 n n C5' H5' OBN sing 313 n n C6' "H6'1" OBN sing 314 n n C6' "H6'2" OBN sing 315 n n C6' "H6'3" OBN sing 316 n n O1 HO1 OBN sing 317 n n O5 HO5 OBN sing 318 n n O11 HOE OBN sing 319 n n O14 HOF OBN sing 320 n n O19 HON OBN sing 321 n n O2' HO2' OBN sing 322 n n O3' HO3' OBN sing 323 n n O4' HO4' OBN sing 324 n n # _atom_sites.entry_id 3N23 _atom_sites.fract_transf_matrix[1][1] 0.008535 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008408 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002024 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 OBN A 1 1 1 OBN OBN . H 5 MG A 1 1017 1 MG MG . I 4 OBN C 1 1 1 OBN OBN . J 5 MG C 1 1017 1 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OBN . . . I 4 -58.256 -83.348 47.071 1 274.69 ? C1 OBN 1 C 1 HETATM 2 C C2 OBN . . . I 4 -58.935 -81.977 47.041 1 274.69 ? C2 OBN 1 C 1 HETATM 3 C C3 OBN . . . I 4 -58.299 -81.161 45.928 1 274.69 ? C3 OBN 1 C 1 HETATM 4 C C4 OBN . . . I 4 -56.806 -81.001 46.189 1 274.69 ? C4 OBN 1 C 1 HETATM 5 C C5 OBN . . . I 4 -56.077 -82.33 46.405 1 274.69 ? C5 OBN 1 C 1 HETATM 6 C C6 OBN . . . I 4 -54.619 -82.062 46.75 1 274.69 ? C6 OBN 1 C 1 HETATM 7 C C7 OBN . . . I 4 -54.525 -81.419 48.121 1 274.69 ? C7 OBN 1 C 1 HETATM 8 C C8 OBN . . . I 4 -55.226 -82.289 49.167 1 274.69 ? C8 OBN 1 C 1 HETATM 9 C C9 OBN . . . I 4 -56.703 -82.539 48.857 1 274.69 ? C9 OBN 1 C 1 HETATM 10 C C10 OBN . . . I 4 -56.788 -83.187 47.471 1 274.69 ? C10 OBN 1 C 1 HETATM 11 C C11 OBN . . . I 4 -57.283 -83.363 50.016 1 274.69 ? C11 OBN 1 C 1 HETATM 12 C C12 OBN . . . I 4 -57.352 -82.459 51.224 1 274.69 ? C12 OBN 1 C 1 HETATM 13 C C13 OBN . . . I 4 -55.966 -82.031 51.678 1 274.69 ? C13 OBN 1 C 1 HETATM 14 C C14 OBN . . . I 4 -54.941 -81.739 50.561 1 274.69 ? C14 OBN 1 C 1 HETATM 15 C C15 OBN . . . I 4 -54.715 -80.23 50.463 1 274.69 ? C15 OBN 1 C 1 HETATM 16 C C16 OBN . . . I 4 -55.317 -79.593 51.692 1 274.69 ? C16 OBN 1 C 1 HETATM 17 C C17 OBN . . . I 4 -56.166 -80.668 52.347 1 274.69 ? C17 OBN 1 C 1 HETATM 18 C C18 OBN . . . I 4 -55.493 -83.15 52.615 1 274.69 ? C18 OBN 1 C 1 HETATM 19 C C19 OBN . . . I 4 -56.015 -84.499 47.64 1 274.69 ? C19 OBN 1 C 1 HETATM 20 C C20 OBN . . . I 4 -55.807 -80.652 53.785 1 274.69 ? C20 OBN 1 C 1 HETATM 21 C C21 OBN . . . I 4 -54.403 -80.804 54.353 1 274.69 ? C21 OBN 1 C 1 HETATM 22 C C22 OBN . . . I 4 -56.759 -80.468 54.686 1 274.69 ? C22 OBN 1 C 1 HETATM 23 C C23 OBN . . . I 4 -56.111 -80.748 55.957 1 274.69 ? C23 OBN 1 C 1 HETATM 24 C C1' OBN . . . I 4 -58.55 -81.36 43.485 1 274.69 ? C1' OBN 1 C 1 HETATM 25 C C2' OBN . . . I 4 -58.762 -82.561 42.571 1 274.69 ? C2' OBN 1 C 1 HETATM 26 C C3' OBN . . . I 4 -60.132 -83.197 42.848 1 274.69 ? C3' OBN 1 C 1 HETATM 27 C C4' OBN . . . I 4 -61.278 -82.176 42.914 1 274.69 ? C4' OBN 1 C 1 HETATM 28 C C5' OBN . . . I 4 -60.912 -80.941 43.742 1 274.69 ? C5' OBN 1 C 1 HETATM 29 C C6' OBN . . . I 4 -61.94 -79.829 43.603 1 274.69 ? C6' OBN 1 C 1 HETATM 30 O O1 OBN . . . I 4 -58.369 -84.023 45.804 1 274.69 ? O1 OBN 1 C 1 HETATM 31 O O3 OBN . . . I 4 -58.466 -81.966 44.771 1 274.69 ? O3 OBN 1 C 1 HETATM 32 O O5 OBN . . . I 4 -56.051 -83.078 45.188 1 274.69 ? O5 OBN 1 C 1 HETATM 33 O O11 OBN . . . I 4 -58.599 -83.893 49.82 1 274.69 ? O11 OBN 1 C 1 HETATM 34 O O14 OBN . . . I 4 -53.704 -82.328 50.958 1 274.69 ? O14 OBN 1 C 1 HETATM 35 O O19 OBN . . . I 4 -56.829 -85.64 47.927 1 274.69 ? O19 OBN 1 C 1 HETATM 36 O O21 OBN . . . I 4 -54.703 -81.022 55.731 1 274.69 ? O21 OBN 1 C 1 HETATM 37 O O23 OBN . . . I 4 -56.672 -80.749 57.04 1 274.69 ? O23 OBN 1 C 1 HETATM 38 O O2' OBN . . . I 4 -58.566 -82.198 41.197 1 274.69 ? O2' OBN 1 C 1 HETATM 39 O O3' OBN . . . I 4 -60.408 -84.205 41.87 1 274.69 ? O3' OBN 1 C 1 HETATM 40 O O4' OBN . . . I 4 -62.438 -82.795 43.484 1 274.69 ? O4' OBN 1 C 1 HETATM 41 O O5' OBN . . . I 4 -59.631 -80.421 43.367 1 274.69 ? O5' OBN 1 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 41 #