data_3N2G # _model_server_result.job_id uovTcUvArQcY-fGnL-U-SQ _model_server_result.datetime_utc '2024-10-19 01:42:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n2g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":600}' # _entry.id 3N2G # _exptl.entry_id 3N2G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3N2G _cell.length_a 328.553 _cell.length_b 328.553 _cell.length_c 54.745 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N2G _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O3G GTP . A GTP 600 1_555 G MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc2 C OD1 ASP 98 C ASP 98 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc3 K O2B GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? metalc ? metalc4 K O3G GTP . C GTP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 219 n n PG O2G GTP sing 220 n n PG O3G GTP sing 221 n n PG O3B GTP sing 222 n n O2G HOG2 GTP sing 223 n n O3G HOG3 GTP sing 224 n n O3B PB GTP sing 225 n n PB O1B GTP doub 226 n n PB O2B GTP sing 227 n n PB O3A GTP sing 228 n n O2B HOB2 GTP sing 229 n n O3A PA GTP sing 230 n n PA O1A GTP doub 231 n n PA O2A GTP sing 232 n n PA O5' GTP sing 233 n n O2A HOA2 GTP sing 234 n n O5' C5' GTP sing 235 n n C5' C4' GTP sing 236 n n C5' H5' GTP sing 237 n n C5' "H5''" GTP sing 238 n n C4' O4' GTP sing 239 n n C4' C3' GTP sing 240 n n C4' H4' GTP sing 241 n n O4' C1' GTP sing 242 n n C3' O3' GTP sing 243 n n C3' C2' GTP sing 244 n n C3' H3' GTP sing 245 n n O3' HO3' GTP sing 246 n n C2' O2' GTP sing 247 n n C2' C1' GTP sing 248 n n C2' H2' GTP sing 249 n n O2' HO2' GTP sing 250 n n C1' N9 GTP sing 251 n n C1' H1' GTP sing 252 n n N9 C8 GTP sing 253 n y N9 C4 GTP sing 254 n y C8 N7 GTP doub 255 n y C8 H8 GTP sing 256 n n N7 C5 GTP sing 257 n y C5 C6 GTP sing 258 n n C5 C4 GTP doub 259 n y C6 O6 GTP doub 260 n n C6 N1 GTP sing 261 n n N1 C2 GTP sing 262 n n N1 HN1 GTP sing 263 n n C2 N2 GTP sing 264 n n C2 N3 GTP doub 265 n n N2 HN21 GTP sing 266 n n N2 HN22 GTP sing 267 n n N3 C4 GTP sing 268 n n # _atom_sites.entry_id 3N2G _atom_sites.fract_transf_matrix[1][1] 0.003044 _atom_sites.fract_transf_matrix[1][2] 0.001757 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018267 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 GTP A 1 600 600 GTP GTP . G 5 MG A 1 601 601 MG MG . H 6 GDP B 1 600 600 GDP GDP . I 5 MG B 1 601 601 MG MG . J 7 G2N B 1 700 700 G2N G2N . K 4 GTP C 1 600 600 GTP GTP . L 5 MG C 1 601 601 MG MG . M 6 GDP D 1 600 600 GDP GDP . N 7 G2N D 1 700 700 G2N G2N . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . F 4 123.36 92.542 17.704 1 71.92 ? PG GTP 600 A 1 HETATM 2 O O1G GTP . . . F 4 123.622 91.397 16.82 1 71.7 ? O1G GTP 600 A 1 HETATM 3 O O2G GTP . . . F 4 123.657 92.082 19.134 1 71.4 ? O2G GTP 600 A 1 HETATM 4 O O3G GTP . . . F 4 121.962 93.17 17.455 1 71.39 ? O3G GTP 600 A 1 HETATM 5 O O3B GTP . . . F 4 124.397 93.722 17.438 1 74.83 ? O3B GTP 600 A 1 HETATM 6 P PB GTP . . . F 4 123.856 95.244 17.45 1 76.96 ? PB GTP 600 A 1 HETATM 7 O O1B GTP . . . F 4 124.864 96.173 18.054 1 75.97 ? O1B GTP 600 A 1 HETATM 8 O O2B GTP . . . F 4 122.413 95.315 18.049 1 75.87 ? O2B GTP 600 A 1 HETATM 9 O O3A GTP . . . F 4 123.848 95.569 15.874 1 76.49 ? O3A GTP 600 A 1 HETATM 10 P PA GTP . . . F 4 125.213 95.484 15.023 1 75.63 ? PA GTP 600 A 1 HETATM 11 O O1A GTP . . . F 4 125.264 94.217 14.263 1 76.15 ? O1A GTP 600 A 1 HETATM 12 O O2A GTP . . . F 4 126.38 95.637 16.024 1 76.17 ? O2A GTP 600 A 1 HETATM 13 O O5' GTP . . . F 4 125.146 96.71 13.987 1 75.08 ? O5' GTP 600 A 1 HETATM 14 C C5' GTP . . . F 4 124.693 96.606 12.661 1 74.23 ? C5' GTP 600 A 1 HETATM 15 C C4' GTP . . . F 4 125.643 97.506 11.919 1 74.27 ? C4' GTP 600 A 1 HETATM 16 O O4' GTP . . . F 4 126.88 97.097 12.414 1 74.4 ? O4' GTP 600 A 1 HETATM 17 C C3' GTP . . . F 4 125.667 97.245 10.433 1 75.19 ? C3' GTP 600 A 1 HETATM 18 O O3' GTP . . . F 4 126.093 98.442 9.82 1 75.63 ? O3' GTP 600 A 1 HETATM 19 C C2' GTP . . . F 4 126.785 96.261 10.241 1 75.92 ? C2' GTP 600 A 1 HETATM 20 O O2' GTP . . . F 4 127.408 96.482 8.998 1 76.87 ? O2' GTP 600 A 1 HETATM 21 C C1' GTP . . . F 4 127.724 96.634 11.376 1 75.53 ? C1' GTP 600 A 1 HETATM 22 N N9 GTP . . . F 4 128.636 95.551 11.815 1 74.84 ? N9 GTP 600 A 1 HETATM 23 C C8 GTP . . . F 4 128.238 94.372 12.349 1 75.6 ? C8 GTP 600 A 1 HETATM 24 N N7 GTP . . . F 4 129.337 93.65 12.639 1 75.78 ? N7 GTP 600 A 1 HETATM 25 C C5 GTP . . . F 4 130.435 94.335 12.315 1 74.99 ? C5 GTP 600 A 1 HETATM 26 C C6 GTP . . . F 4 131.778 94.016 12.413 1 75.51 ? C6 GTP 600 A 1 HETATM 27 O O6 GTP . . . F 4 132.126 92.931 12.86 1 76 ? O6 GTP 600 A 1 HETATM 28 N N1 GTP . . . F 4 132.723 94.912 12.001 1 75.54 ? N1 GTP 600 A 1 HETATM 29 C C2 GTP . . . F 4 132.288 96.113 11.501 1 75.41 ? C2 GTP 600 A 1 HETATM 30 N N2 GTP . . . F 4 133.172 96.998 11.102 1 76.37 ? N2 GTP 600 A 1 HETATM 31 N N3 GTP . . . F 4 130.953 96.415 11.391 1 74.89 ? N3 GTP 600 A 1 HETATM 32 C C4 GTP . . . F 4 130.016 95.537 11.794 1 74.67 ? C4 GTP 600 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 70 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 32 #