data_3N2P # _model_server_result.job_id 2DFyoN7dgTH27EYwSQngKQ _model_server_result.datetime_utc '2024-12-22 06:06:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n2p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":264}' # _entry.id 3N2P # _exptl.entry_id 3N2P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.17 _cell.angle_gamma 90 _cell.entry_id 3N2P _cell.length_a 42.34 _cell.length_b 41.303 _cell.length_c 71.972 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N2P _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc4 B ZN ZN . A ZN 262 1_555 C N1 AYX . A AYX 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 119 n n S C1 DMS sing 120 n n S C2 DMS sing 121 n n C1 H11 DMS sing 122 n n C1 H12 DMS sing 123 n n C1 H13 DMS sing 124 n n C2 H21 DMS sing 125 n n C2 H22 DMS sing 126 n n C2 H23 DMS sing 127 n n # _atom_sites.entry_id 3N2P _atom_sites.fract_transf_matrix[1][1] 0.023618 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005965 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 262 262 ZN ZN . C 3 AYX A 1 263 263 AYX AYX . D 4 DMS A 1 264 264 DMS DMS . E 5 GOL A 1 401 401 GOL GOL . F 6 HOH A 1 126 126 HOH HOH . F 6 HOH A 2 265 1 HOH HOH . F 6 HOH A 3 266 2 HOH HOH . F 6 HOH A 4 267 3 HOH HOH . F 6 HOH A 5 268 4 HOH HOH . F 6 HOH A 6 269 5 HOH HOH . F 6 HOH A 7 270 6 HOH HOH . F 6 HOH A 8 271 7 HOH HOH . F 6 HOH A 9 272 8 HOH HOH . F 6 HOH A 10 273 9 HOH HOH . F 6 HOH A 11 274 10 HOH HOH . F 6 HOH A 12 275 11 HOH HOH . F 6 HOH A 13 276 12 HOH HOH . F 6 HOH A 14 277 13 HOH HOH . F 6 HOH A 15 278 14 HOH HOH . F 6 HOH A 16 279 15 HOH HOH . F 6 HOH A 17 280 16 HOH HOH . F 6 HOH A 18 281 17 HOH HOH . F 6 HOH A 19 282 18 HOH HOH . F 6 HOH A 20 283 19 HOH HOH . F 6 HOH A 21 284 20 HOH HOH . F 6 HOH A 22 285 21 HOH HOH . F 6 HOH A 23 286 22 HOH HOH . F 6 HOH A 24 287 23 HOH HOH . F 6 HOH A 25 288 24 HOH HOH . F 6 HOH A 26 289 25 HOH HOH . F 6 HOH A 27 290 26 HOH HOH . F 6 HOH A 28 291 27 HOH HOH . F 6 HOH A 29 292 28 HOH HOH . F 6 HOH A 30 293 29 HOH HOH . F 6 HOH A 31 294 30 HOH HOH . F 6 HOH A 32 295 31 HOH HOH . F 6 HOH A 33 296 32 HOH HOH . F 6 HOH A 34 297 33 HOH HOH . F 6 HOH A 35 298 34 HOH HOH . F 6 HOH A 36 299 35 HOH HOH . F 6 HOH A 37 300 36 HOH HOH . F 6 HOH A 38 301 37 HOH HOH . F 6 HOH A 39 302 38 HOH HOH . F 6 HOH A 40 303 39 HOH HOH . F 6 HOH A 41 304 40 HOH HOH . F 6 HOH A 42 305 41 HOH HOH . F 6 HOH A 43 306 42 HOH HOH . F 6 HOH A 44 307 44 HOH HOH . F 6 HOH A 45 308 45 HOH HOH . F 6 HOH A 46 309 46 HOH HOH . F 6 HOH A 47 310 47 HOH HOH . F 6 HOH A 48 311 48 HOH HOH . F 6 HOH A 49 312 49 HOH HOH . F 6 HOH A 50 313 50 HOH HOH . F 6 HOH A 51 314 51 HOH HOH . F 6 HOH A 52 315 52 HOH HOH . F 6 HOH A 53 316 53 HOH HOH . F 6 HOH A 54 317 54 HOH HOH . F 6 HOH A 55 318 55 HOH HOH . F 6 HOH A 56 319 56 HOH HOH . F 6 HOH A 57 320 57 HOH HOH . F 6 HOH A 58 321 58 HOH HOH . F 6 HOH A 59 322 59 HOH HOH . F 6 HOH A 60 323 60 HOH HOH . F 6 HOH A 61 324 61 HOH HOH . F 6 HOH A 62 325 62 HOH HOH . F 6 HOH A 63 326 63 HOH HOH . F 6 HOH A 64 327 64 HOH HOH . F 6 HOH A 65 328 65 HOH HOH . F 6 HOH A 66 329 66 HOH HOH . F 6 HOH A 67 330 67 HOH HOH . F 6 HOH A 68 331 68 HOH HOH . F 6 HOH A 69 332 69 HOH HOH . F 6 HOH A 70 333 70 HOH HOH . F 6 HOH A 71 334 71 HOH HOH . F 6 HOH A 72 335 72 HOH HOH . F 6 HOH A 73 336 73 HOH HOH . F 6 HOH A 74 337 74 HOH HOH . F 6 HOH A 75 338 75 HOH HOH . F 6 HOH A 76 339 76 HOH HOH . F 6 HOH A 77 340 77 HOH HOH . F 6 HOH A 78 341 78 HOH HOH . F 6 HOH A 79 342 79 HOH HOH . F 6 HOH A 80 343 80 HOH HOH . F 6 HOH A 81 344 81 HOH HOH . F 6 HOH A 82 345 82 HOH HOH . F 6 HOH A 83 346 83 HOH HOH . F 6 HOH A 84 347 84 HOH HOH . F 6 HOH A 85 348 85 HOH HOH . F 6 HOH A 86 349 86 HOH HOH . F 6 HOH A 87 350 87 HOH HOH . F 6 HOH A 88 351 88 HOH HOH . F 6 HOH A 89 352 89 HOH HOH . F 6 HOH A 90 353 90 HOH HOH . F 6 HOH A 91 354 91 HOH HOH . F 6 HOH A 92 355 92 HOH HOH . F 6 HOH A 93 356 93 HOH HOH . F 6 HOH A 94 357 94 HOH HOH . F 6 HOH A 95 358 95 HOH HOH . F 6 HOH A 96 359 96 HOH HOH . F 6 HOH A 97 360 97 HOH HOH . F 6 HOH A 98 361 98 HOH HOH . F 6 HOH A 99 362 99 HOH HOH . F 6 HOH A 100 363 100 HOH HOH . F 6 HOH A 101 364 101 HOH HOH . F 6 HOH A 102 365 102 HOH HOH . F 6 HOH A 103 366 103 HOH HOH . F 6 HOH A 104 367 104 HOH HOH . F 6 HOH A 105 368 105 HOH HOH . F 6 HOH A 106 369 106 HOH HOH . F 6 HOH A 107 370 107 HOH HOH . F 6 HOH A 108 371 108 HOH HOH . F 6 HOH A 109 372 109 HOH HOH . F 6 HOH A 110 373 110 HOH HOH . F 6 HOH A 111 374 111 HOH HOH . F 6 HOH A 112 375 112 HOH HOH . F 6 HOH A 113 376 113 HOH HOH . F 6 HOH A 114 377 114 HOH HOH . F 6 HOH A 115 378 115 HOH HOH . F 6 HOH A 116 379 116 HOH HOH . F 6 HOH A 117 380 117 HOH HOH . F 6 HOH A 118 381 118 HOH HOH . F 6 HOH A 119 382 119 HOH HOH . F 6 HOH A 120 383 120 HOH HOH . F 6 HOH A 121 384 121 HOH HOH . F 6 HOH A 122 385 122 HOH HOH . F 6 HOH A 123 386 123 HOH HOH . F 6 HOH A 124 387 124 HOH HOH . F 6 HOH A 125 388 125 HOH HOH . F 6 HOH A 126 389 127 HOH HOH . F 6 HOH A 127 390 128 HOH HOH . F 6 HOH A 128 391 129 HOH HOH . F 6 HOH A 129 392 130 HOH HOH . F 6 HOH A 130 393 131 HOH HOH . F 6 HOH A 131 394 132 HOH HOH . F 6 HOH A 132 395 133 HOH HOH . F 6 HOH A 133 396 134 HOH HOH . F 6 HOH A 134 397 135 HOH HOH . F 6 HOH A 135 398 136 HOH HOH . F 6 HOH A 136 399 137 HOH HOH . F 6 HOH A 137 400 138 HOH HOH . F 6 HOH A 138 402 139 HOH HOH . F 6 HOH A 139 403 140 HOH HOH . F 6 HOH A 140 404 141 HOH HOH . F 6 HOH A 141 405 142 HOH HOH . F 6 HOH A 142 406 143 HOH HOH . F 6 HOH A 143 407 144 HOH HOH . F 6 HOH A 144 408 145 HOH HOH . F 6 HOH A 145 409 146 HOH HOH . F 6 HOH A 146 410 147 HOH HOH . F 6 HOH A 147 411 148 HOH HOH . F 6 HOH A 148 412 149 HOH HOH . F 6 HOH A 149 413 150 HOH HOH . F 6 HOH A 150 414 151 HOH HOH . F 6 HOH A 151 415 152 HOH HOH . F 6 HOH A 152 416 153 HOH HOH . F 6 HOH A 153 417 154 HOH HOH . F 6 HOH A 154 418 155 HOH HOH . F 6 HOH A 155 419 156 HOH HOH . F 6 HOH A 156 420 157 HOH HOH . F 6 HOH A 157 421 158 HOH HOH . F 6 HOH A 158 422 159 HOH HOH . F 6 HOH A 159 423 160 HOH HOH . F 6 HOH A 160 424 161 HOH HOH . F 6 HOH A 161 425 162 HOH HOH . F 6 HOH A 162 426 163 HOH HOH . F 6 HOH A 163 427 164 HOH HOH . F 6 HOH A 164 428 165 HOH HOH . F 6 HOH A 165 429 166 HOH HOH . F 6 HOH A 166 430 167 HOH HOH . F 6 HOH A 167 431 168 HOH HOH . F 6 HOH A 168 432 169 HOH HOH . F 6 HOH A 169 433 170 HOH HOH . F 6 HOH A 170 434 171 HOH HOH . F 6 HOH A 171 435 172 HOH HOH . F 6 HOH A 172 436 173 HOH HOH . F 6 HOH A 173 437 174 HOH HOH . F 6 HOH A 174 438 175 HOH HOH . F 6 HOH A 175 439 176 HOH HOH . F 6 HOH A 176 440 177 HOH HOH . F 6 HOH A 177 441 178 HOH HOH . F 6 HOH A 178 442 179 HOH HOH . F 6 HOH A 179 443 180 HOH HOH . F 6 HOH A 180 444 182 HOH HOH . F 6 HOH A 181 445 183 HOH HOH . F 6 HOH A 182 446 184 HOH HOH . F 6 HOH A 183 447 185 HOH HOH . F 6 HOH A 184 448 186 HOH HOH . F 6 HOH A 185 449 187 HOH HOH . F 6 HOH A 186 450 188 HOH HOH . F 6 HOH A 187 451 189 HOH HOH . F 6 HOH A 188 452 190 HOH HOH . F 6 HOH A 189 453 191 HOH HOH . F 6 HOH A 190 454 192 HOH HOH . F 6 HOH A 191 455 194 HOH HOH . F 6 HOH A 192 456 195 HOH HOH . F 6 HOH A 193 457 196 HOH HOH . F 6 HOH A 194 458 197 HOH HOH . F 6 HOH A 195 459 198 HOH HOH . F 6 HOH A 196 460 199 HOH HOH . F 6 HOH A 197 461 200 HOH HOH . F 6 HOH A 198 462 201 HOH HOH . F 6 HOH A 199 463 202 HOH HOH . F 6 HOH A 200 464 203 HOH HOH . F 6 HOH A 201 465 204 HOH HOH . F 6 HOH A 202 466 205 HOH HOH . F 6 HOH A 203 467 210 HOH HOH . F 6 HOH A 204 468 211 HOH HOH . F 6 HOH A 205 469 212 HOH HOH . F 6 HOH A 206 470 215 HOH HOH . F 6 HOH A 207 471 216 HOH HOH . F 6 HOH A 208 472 217 HOH HOH . F 6 HOH A 209 473 218 HOH HOH . F 6 HOH A 210 474 219 HOH HOH . F 6 HOH A 211 475 220 HOH HOH . F 6 HOH A 212 476 221 HOH HOH . F 6 HOH A 213 477 222 HOH HOH . F 6 HOH A 214 478 223 HOH HOH . F 6 HOH A 215 479 224 HOH HOH . F 6 HOH A 216 480 225 HOH HOH . F 6 HOH A 217 481 226 HOH HOH . F 6 HOH A 218 482 227 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 4 -4.894 6.273 6.211 1 74.54 ? S DMS 264 A 1 HETATM 2 O O DMS . . . D 4 -6.637 5.883 6.568 1 23.32 ? O DMS 264 A 1 HETATM 3 C C1 DMS . . . D 4 -4.396 7.901 6.86 1 42.35 ? C1 DMS 264 A 1 HETATM 4 C C2 DMS . . . D 4 -3.797 5.183 7.167 1 22.64 ? C2 DMS 264 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 4 #