data_3N2Z # _model_server_result.job_id aPBsfDQNaSQTxG5-5ReGhg _model_server_result.datetime_utc '2024-11-26 02:33:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n2z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":492}' # _entry.id 3N2Z # _exptl.entry_id 3N2Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3N2Z _cell.length_a 181.14 _cell.length_b 181.14 _cell.length_c 240.13 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N2Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 17_555 x-y+1/3,-y+2/3,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 104.581228 160.086667 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 A 1 NAG B 3 NAG 2 n B NAG 2 A 2 NAG B 4 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 170 B CYS 215 1_555 A SG CYS 327 B CYS 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? disulf ? disulf2 A SG CYS 188 B CYS 233 1_555 A SG CYS 265 B CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf3 A SG CYS 219 B CYS 264 1_555 A SG CYS 298 B CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf4 A SG CYS 319 B CYS 364 1_555 A SG CYS 349 B CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale1 C C1 NAG . B NAG 1 1_555 A ND2 ASN 56 B ASN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 D C1 NAG . B NAG 2 1_555 A ND2 ASN 272 B ASN 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.486 ? covale ? covale3 E C1 NAG . B NAG 5 1_555 A ND2 ASN 300 B ASN 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? covale ? covale4 F C1 NAG . B NAG 6 1_555 A ND2 ASN 370 B ASN 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 A ND2 ASN 291 B ASN 336 1_555 B C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale6 B O4 NAG . A NAG 1 1_555 B C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 320 n n S O2 SO4 doub 321 n n S O3 SO4 sing 322 n n S O4 SO4 sing 323 n n # _atom_sites.entry_id 3N2Z _atom_sites.fract_transf_matrix[1][1] 0.005521 _atom_sites.fract_transf_matrix[1][2] 0.003187 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006375 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG B 1 1 1 NAG NAG . D 3 NAG B 1 2 2 NAG NAG . E 3 NAG B 1 5 5 NAG NAG . F 3 NAG B 1 6 6 NAG NAG . G 4 SO4 B 1 492 2 SO4 SO4 . H 5 HOH B 1 7 7 HOH HOH . H 5 HOH B 2 8 8 HOH HOH . H 5 HOH B 3 9 9 HOH HOH . H 5 HOH B 4 10 10 HOH HOH . H 5 HOH B 5 11 11 HOH HOH . H 5 HOH B 6 12 12 HOH HOH . H 5 HOH B 7 13 13 HOH HOH . H 5 HOH B 8 14 14 HOH HOH . H 5 HOH B 9 15 15 HOH HOH . H 5 HOH B 10 16 16 HOH HOH . H 5 HOH B 11 17 17 HOH HOH . H 5 HOH B 12 18 18 HOH HOH . H 5 HOH B 13 19 19 HOH HOH . H 5 HOH B 14 20 20 HOH HOH . H 5 HOH B 15 21 21 HOH HOH . H 5 HOH B 16 22 22 HOH HOH . H 5 HOH B 17 23 23 HOH HOH . H 5 HOH B 18 24 24 HOH HOH . H 5 HOH B 19 26 26 HOH HOH . H 5 HOH B 20 28 28 HOH HOH . H 5 HOH B 21 29 29 HOH HOH . H 5 HOH B 22 30 30 HOH HOH . H 5 HOH B 23 31 31 HOH HOH . H 5 HOH B 24 32 32 HOH HOH . H 5 HOH B 25 34 34 HOH HOH . H 5 HOH B 26 39 39 HOH HOH . H 5 HOH B 27 40 40 HOH HOH . H 5 HOH B 28 42 42 HOH HOH . H 5 HOH B 29 43 43 HOH HOH . H 5 HOH B 30 44 44 HOH HOH . H 5 HOH B 31 45 45 HOH HOH . H 5 HOH B 32 493 1 HOH HOH . H 5 HOH B 33 494 2 HOH HOH . H 5 HOH B 34 495 3 HOH HOH . H 5 HOH B 35 496 4 HOH HOH . H 5 HOH B 36 497 5 HOH HOH . H 5 HOH B 37 498 6 HOH HOH . H 5 HOH B 38 499 46 HOH HOH . H 5 HOH B 39 500 47 HOH HOH . H 5 HOH B 40 501 48 HOH HOH . H 5 HOH B 41 502 49 HOH HOH . H 5 HOH B 42 503 50 HOH HOH . H 5 HOH B 43 504 51 HOH HOH . H 5 HOH B 44 505 52 HOH HOH . H 5 HOH B 45 506 53 HOH HOH . H 5 HOH B 46 507 54 HOH HOH . H 5 HOH B 47 508 55 HOH HOH . H 5 HOH B 48 509 56 HOH HOH . H 5 HOH B 49 510 57 HOH HOH . H 5 HOH B 50 511 58 HOH HOH . H 5 HOH B 51 512 59 HOH HOH . H 5 HOH B 52 513 60 HOH HOH . H 5 HOH B 53 514 61 HOH HOH . H 5 HOH B 54 515 62 HOH HOH . H 5 HOH B 55 516 63 HOH HOH . H 5 HOH B 56 517 64 HOH HOH . H 5 HOH B 57 518 65 HOH HOH . H 5 HOH B 58 519 66 HOH HOH . H 5 HOH B 59 520 68 HOH HOH . H 5 HOH B 60 521 70 HOH HOH . H 5 HOH B 61 522 71 HOH HOH . H 5 HOH B 62 523 72 HOH HOH . H 5 HOH B 63 524 73 HOH HOH . H 5 HOH B 64 525 74 HOH HOH . H 5 HOH B 65 526 75 HOH HOH . H 5 HOH B 66 527 76 HOH HOH . H 5 HOH B 67 528 78 HOH HOH . H 5 HOH B 68 529 79 HOH HOH . H 5 HOH B 69 530 80 HOH HOH . H 5 HOH B 70 531 81 HOH HOH . H 5 HOH B 71 532 82 HOH HOH . H 5 HOH B 72 533 83 HOH HOH . H 5 HOH B 73 534 86 HOH HOH . H 5 HOH B 74 535 89 HOH HOH . H 5 HOH B 75 536 90 HOH HOH . H 5 HOH B 76 537 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . G 4 45.151 52.367 63.816 1 91.38 ? S SO4 492 B 1 HETATM 2 O O1 SO4 . . . G 4 46.129 52.443 62.701 1 95.37 ? O1 SO4 492 B 1 HETATM 3 O O2 SO4 . . . G 4 45.666 51.474 64.855 1 95.87 ? O2 SO4 492 B 1 HETATM 4 O O3 SO4 . . . G 4 43.857 51.864 63.327 1 98.15 ? O3 SO4 492 B 1 HETATM 5 O O4 SO4 . . . G 4 44.94 53.685 64.395 1 96.49 ? O4 SO4 492 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #