data_3N2Z
#
_model_server_result.job_id            5bOuI0Z4TWySOLhKTuDqvw 
_model_server_result.datetime_utc      '2024-11-26 02:23:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3n2z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":6}' 
#
_entry.id    3N2Z 
#
_exptl.entry_id    3N2Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3N2Z 
_cell.length_a            181.14 
_cell.length_b            181.14 
_cell.length_c            240.13 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3N2Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 17_555 x-y+1/3,-y+2/3,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 104.581228 160.086667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 A 1 NAG B 3 NAG 
2 n B NAG 2 A 2 NAG B 4 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 170 B CYS 215 1_555 A SG CYS 327 B CYS 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
disulf ? disulf2 A SG CYS 188 B CYS 233 1_555 A SG CYS 265 B CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf3 A SG CYS 219 B CYS 264 1_555 A SG CYS 298 B CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf4 A SG CYS 319 B CYS 364 1_555 A SG CYS 349 B CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
covale ? covale1 C C1 NAG . B NAG 1 1_555 A ND2 ASN 56 B ASN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale2 D C1 NAG . B NAG 2 1_555 A ND2 ASN 272 B ASN 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.486 ? 
covale ? covale3 E C1 NAG . B NAG 5 1_555 A ND2 ASN 300 B ASN 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? 
covale ? covale4 F C1 NAG . B NAG 6 1_555 A ND2 ASN 370 B ASN 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale5 A ND2 ASN 291 B ASN 336 1_555 B C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? 
covale ? covale6 B O4 NAG . A NAG 1 1_555 B C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3N2Z 
_atom_sites.fract_transf_matrix[1][1]    0.005521 
_atom_sites.fract_transf_matrix[1][2]    0.003187 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006375 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004164 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG B 1 1 1 NAG NAG . 
D 3 NAG B 1 2 2 NAG NAG . 
E 3 NAG B 1 5 5 NAG NAG . 
F 3 NAG B 1 6 6 NAG NAG . 
G 4 SO4 B 1 492 2 SO4 SO4 . 
H 5 HOH B 1 7 7 HOH HOH . 
H 5 HOH B 2 8 8 HOH HOH . 
H 5 HOH B 3 9 9 HOH HOH . 
H 5 HOH B 4 10 10 HOH HOH . 
H 5 HOH B 5 11 11 HOH HOH . 
H 5 HOH B 6 12 12 HOH HOH . 
H 5 HOH B 7 13 13 HOH HOH . 
H 5 HOH B 8 14 14 HOH HOH . 
H 5 HOH B 9 15 15 HOH HOH . 
H 5 HOH B 10 16 16 HOH HOH . 
H 5 HOH B 11 17 17 HOH HOH . 
H 5 HOH B 12 18 18 HOH HOH . 
H 5 HOH B 13 19 19 HOH HOH . 
H 5 HOH B 14 20 20 HOH HOH . 
H 5 HOH B 15 21 21 HOH HOH . 
H 5 HOH B 16 22 22 HOH HOH . 
H 5 HOH B 17 23 23 HOH HOH . 
H 5 HOH B 18 24 24 HOH HOH . 
H 5 HOH B 19 26 26 HOH HOH . 
H 5 HOH B 20 28 28 HOH HOH . 
H 5 HOH B 21 29 29 HOH HOH . 
H 5 HOH B 22 30 30 HOH HOH . 
H 5 HOH B 23 31 31 HOH HOH . 
H 5 HOH B 24 32 32 HOH HOH . 
H 5 HOH B 25 34 34 HOH HOH . 
H 5 HOH B 26 39 39 HOH HOH . 
H 5 HOH B 27 40 40 HOH HOH . 
H 5 HOH B 28 42 42 HOH HOH . 
H 5 HOH B 29 43 43 HOH HOH . 
H 5 HOH B 30 44 44 HOH HOH . 
H 5 HOH B 31 45 45 HOH HOH . 
H 5 HOH B 32 493 1 HOH HOH . 
H 5 HOH B 33 494 2 HOH HOH . 
H 5 HOH B 34 495 3 HOH HOH . 
H 5 HOH B 35 496 4 HOH HOH . 
H 5 HOH B 36 497 5 HOH HOH . 
H 5 HOH B 37 498 6 HOH HOH . 
H 5 HOH B 38 499 46 HOH HOH . 
H 5 HOH B 39 500 47 HOH HOH . 
H 5 HOH B 40 501 48 HOH HOH . 
H 5 HOH B 41 502 49 HOH HOH . 
H 5 HOH B 42 503 50 HOH HOH . 
H 5 HOH B 43 504 51 HOH HOH . 
H 5 HOH B 44 505 52 HOH HOH . 
H 5 HOH B 45 506 53 HOH HOH . 
H 5 HOH B 46 507 54 HOH HOH . 
H 5 HOH B 47 508 55 HOH HOH . 
H 5 HOH B 48 509 56 HOH HOH . 
H 5 HOH B 49 510 57 HOH HOH . 
H 5 HOH B 50 511 58 HOH HOH . 
H 5 HOH B 51 512 59 HOH HOH . 
H 5 HOH B 52 513 60 HOH HOH . 
H 5 HOH B 53 514 61 HOH HOH . 
H 5 HOH B 54 515 62 HOH HOH . 
H 5 HOH B 55 516 63 HOH HOH . 
H 5 HOH B 56 517 64 HOH HOH . 
H 5 HOH B 57 518 65 HOH HOH . 
H 5 HOH B 58 519 66 HOH HOH . 
H 5 HOH B 59 520 68 HOH HOH . 
H 5 HOH B 60 521 70 HOH HOH . 
H 5 HOH B 61 522 71 HOH HOH . 
H 5 HOH B 62 523 72 HOH HOH . 
H 5 HOH B 63 524 73 HOH HOH . 
H 5 HOH B 64 525 74 HOH HOH . 
H 5 HOH B 65 526 75 HOH HOH . 
H 5 HOH B 66 527 76 HOH HOH . 
H 5 HOH B 67 528 78 HOH HOH . 
H 5 HOH B 68 529 79 HOH HOH . 
H 5 HOH B 69 530 80 HOH HOH . 
H 5 HOH B 70 531 81 HOH HOH . 
H 5 HOH B 71 532 82 HOH HOH . 
H 5 HOH B 72 533 83 HOH HOH . 
H 5 HOH B 73 534 86 HOH HOH . 
H 5 HOH B 74 535 89 HOH HOH . 
H 5 HOH B 75 536 90 HOH HOH . 
H 5 HOH B 76 537 91 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . F 3 63.325 53.389 64.688 1 96.18 ? C1 NAG 6 B 1 
HETATM 2 C C2 NAG . . . F 3 64.006 54.709 64.246 1 98.12 ? C2 NAG 6 B 1 
HETATM 3 C C3 NAG . . . F 3 63.811 54.763 62.685 1 99.54 ? C3 NAG 6 B 1 
HETATM 4 C C4 NAG . . . F 3 64.57 53.566 61.999 1 100.08 ? C4 NAG 6 B 1 
HETATM 5 C C5 NAG . . . F 3 63.856 52.297 62.634 1 99.24 ? C5 NAG 6 B 1 
HETATM 6 C C6 NAG . . . F 3 64.059 50.894 62.031 1 100.41 ? C6 NAG 6 B 1 
HETATM 7 C C7 NAG . . . F 3 62.812 56.966 64.869 1 100.87 ? C7 NAG 6 B 1 
HETATM 8 C C8 NAG . . . F 3 62.715 57.837 66.115 1 101.67 ? C8 NAG 6 B 1 
HETATM 9 N N2 NAG . . . F 3 63.608 55.847 65.114 1 99.26 ? N2 NAG 6 B 1 
HETATM 10 O O3 NAG . . . F 3 63.988 56.065 62.074 1 101.65 ? O3 NAG 6 B 1 
HETATM 11 O O4 NAG . . . F 3 64.59 53.676 60.518 1 102.51 ? O4 NAG 6 B 1 
HETATM 12 O O5 NAG . . . F 3 63.981 52.272 64.091 1 97.54 ? O5 NAG 6 B 1 
HETATM 13 O O6 NAG . . . F 3 64.464 49.916 63.001 1 102.45 ? O6 NAG 6 B 1 
HETATM 14 O O7 NAG . . . F 3 62.241 57.246 63.784 1 102.92 ? O7 NAG 6 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#