data_3N31 # _model_server_result.job_id LQNoRaV-aoa5SZhN_DpxOA _model_server_result.datetime_utc '2024-11-15 12:47:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n31 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":247}' # _entry.id 3N31 # _exptl.entry_id 3N31 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.156 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-fucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3N31 _cell.length_a 129.153 _cell.length_b 129.153 _cell.length_c 39.366 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N31 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG C 1 NAG 2 n B NAG 2 B 2 NAG C 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 227 A ASN 227 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? # _chem_comp.formula 'C6 H12 O5' _chem_comp.formula_weight 164.156 _chem_comp.id FCA _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-fucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-fucose;6-deoxy-alpha-D-galactopyranose;D-fucose;fucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FCA sing 70 n n C1 O1 FCA sing 71 n n C1 O5 FCA sing 72 n n C1 H1 FCA sing 73 n n C2 C3 FCA sing 74 n n C2 O2 FCA sing 75 n n C2 H2 FCA sing 76 n n C3 C4 FCA sing 77 n n C3 O3 FCA sing 78 n n C3 H3 FCA sing 79 n n C4 C5 FCA sing 80 n n C4 O4 FCA sing 81 n n C4 H4 FCA sing 82 n n C5 C6 FCA sing 83 n n C5 O5 FCA sing 84 n n C5 H5 FCA sing 85 n n C6 H61 FCA sing 86 n n C6 H62 FCA sing 87 n n C6 H63 FCA sing 88 n n O1 HO1 FCA sing 89 n n O2 HO2 FCA sing 90 n n O3 HO3 FCA sing 91 n n O4 HO4 FCA sing 92 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version FCA DFucpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 FCA a-D-fucopyranose 'COMMON NAME' GMML 1 FCA a-D-Fucp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 FCA Fuc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3N31 _atom_sites.fract_transf_matrix[1][1] 0.007743 _atom_sites.fract_transf_matrix[1][2] 0.00447 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008941 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FCA A 1 247 1 FCA FCA . D 4 GOL A 1 250 1 GOL GOL . E 5 HOH A 1 251 1 HOH HOH . E 5 HOH A 2 252 2 HOH HOH . E 5 HOH A 3 253 3 HOH HOH . E 5 HOH A 4 254 4 HOH HOH . E 5 HOH A 5 255 5 HOH HOH . E 5 HOH A 6 256 6 HOH HOH . E 5 HOH A 7 257 7 HOH HOH . E 5 HOH A 8 258 8 HOH HOH . E 5 HOH A 9 259 9 HOH HOH . E 5 HOH A 10 260 10 HOH HOH . E 5 HOH A 11 261 11 HOH HOH . E 5 HOH A 12 262 13 HOH HOH . E 5 HOH A 13 263 14 HOH HOH . E 5 HOH A 14 264 15 HOH HOH . E 5 HOH A 15 265 16 HOH HOH . E 5 HOH A 16 266 17 HOH HOH . E 5 HOH A 17 267 18 HOH HOH . E 5 HOH A 18 268 19 HOH HOH . E 5 HOH A 19 269 20 HOH HOH . E 5 HOH A 20 270 21 HOH HOH . E 5 HOH A 21 271 22 HOH HOH . E 5 HOH A 22 272 23 HOH HOH . E 5 HOH A 23 273 24 HOH HOH . E 5 HOH A 24 274 25 HOH HOH . E 5 HOH A 25 275 26 HOH HOH . E 5 HOH A 26 276 27 HOH HOH . E 5 HOH A 27 277 28 HOH HOH . E 5 HOH A 28 278 29 HOH HOH . E 5 HOH A 29 279 30 HOH HOH . E 5 HOH A 30 280 31 HOH HOH . E 5 HOH A 31 281 32 HOH HOH . E 5 HOH A 32 282 33 HOH HOH . E 5 HOH A 33 283 34 HOH HOH . E 5 HOH A 34 284 35 HOH HOH . E 5 HOH A 35 285 36 HOH HOH . E 5 HOH A 36 286 37 HOH HOH . E 5 HOH A 37 287 38 HOH HOH . E 5 HOH A 38 288 39 HOH HOH . E 5 HOH A 39 289 40 HOH HOH . E 5 HOH A 40 290 41 HOH HOH . E 5 HOH A 41 291 42 HOH HOH . E 5 HOH A 42 292 43 HOH HOH . E 5 HOH A 43 293 44 HOH HOH . E 5 HOH A 44 294 45 HOH HOH . E 5 HOH A 45 295 46 HOH HOH . E 5 HOH A 46 296 47 HOH HOH . E 5 HOH A 47 297 48 HOH HOH . E 5 HOH A 48 298 49 HOH HOH . E 5 HOH A 49 299 50 HOH HOH . E 5 HOH A 50 300 51 HOH HOH . E 5 HOH A 51 301 52 HOH HOH . E 5 HOH A 52 302 53 HOH HOH . E 5 HOH A 53 303 54 HOH HOH . E 5 HOH A 54 304 55 HOH HOH . E 5 HOH A 55 305 56 HOH HOH . E 5 HOH A 56 306 57 HOH HOH . E 5 HOH A 57 307 58 HOH HOH . E 5 HOH A 58 308 59 HOH HOH . E 5 HOH A 59 309 61 HOH HOH . E 5 HOH A 60 310 62 HOH HOH . E 5 HOH A 61 311 63 HOH HOH . E 5 HOH A 62 312 64 HOH HOH . E 5 HOH A 63 313 65 HOH HOH . E 5 HOH A 64 314 66 HOH HOH . E 5 HOH A 65 315 67 HOH HOH . E 5 HOH A 66 316 68 HOH HOH . E 5 HOH A 67 317 69 HOH HOH . E 5 HOH A 68 318 70 HOH HOH . E 5 HOH A 69 319 71 HOH HOH . E 5 HOH A 70 320 72 HOH HOH . E 5 HOH A 71 321 73 HOH HOH . E 5 HOH A 72 322 74 HOH HOH . E 5 HOH A 73 323 75 HOH HOH . E 5 HOH A 74 324 76 HOH HOH . E 5 HOH A 75 325 78 HOH HOH . E 5 HOH A 76 326 79 HOH HOH . E 5 HOH A 77 327 80 HOH HOH . E 5 HOH A 78 328 81 HOH HOH . E 5 HOH A 79 329 82 HOH HOH . E 5 HOH A 80 330 83 HOH HOH . E 5 HOH A 81 331 84 HOH HOH . E 5 HOH A 82 332 85 HOH HOH . E 5 HOH A 83 333 86 HOH HOH . E 5 HOH A 84 334 87 HOH HOH . E 5 HOH A 85 335 88 HOH HOH . E 5 HOH A 86 336 89 HOH HOH . E 5 HOH A 87 337 90 HOH HOH . E 5 HOH A 88 338 91 HOH HOH . E 5 HOH A 89 339 92 HOH HOH . E 5 HOH A 90 340 93 HOH HOH . E 5 HOH A 91 341 94 HOH HOH . E 5 HOH A 92 342 95 HOH HOH . E 5 HOH A 93 343 96 HOH HOH . E 5 HOH A 94 344 97 HOH HOH . E 5 HOH A 95 345 99 HOH HOH . E 5 HOH A 96 346 100 HOH HOH . E 5 HOH A 97 347 102 HOH HOH . E 5 HOH A 98 348 104 HOH HOH . E 5 HOH A 99 349 105 HOH HOH . E 5 HOH A 100 350 106 HOH HOH . E 5 HOH A 101 351 107 HOH HOH . E 5 HOH A 102 352 108 HOH HOH . E 5 HOH A 103 353 109 HOH HOH . E 5 HOH A 104 354 110 HOH HOH . E 5 HOH A 105 355 111 HOH HOH . E 5 HOH A 106 356 112 HOH HOH . E 5 HOH A 107 357 113 HOH HOH . E 5 HOH A 108 358 114 HOH HOH . E 5 HOH A 109 359 115 HOH HOH . E 5 HOH A 110 360 116 HOH HOH . E 5 HOH A 111 361 117 HOH HOH . E 5 HOH A 112 362 118 HOH HOH . E 5 HOH A 113 363 119 HOH HOH . E 5 HOH A 114 364 120 HOH HOH . E 5 HOH A 115 365 121 HOH HOH . E 5 HOH A 116 366 122 HOH HOH . E 5 HOH A 117 367 123 HOH HOH . E 5 HOH A 118 368 124 HOH HOH . E 5 HOH A 119 369 125 HOH HOH . E 5 HOH A 120 370 126 HOH HOH . E 5 HOH A 121 371 128 HOH HOH . E 5 HOH A 122 372 129 HOH HOH . E 5 HOH A 123 373 130 HOH HOH . E 5 HOH A 124 374 131 HOH HOH . E 5 HOH A 125 375 132 HOH HOH . E 5 HOH A 126 376 134 HOH HOH . E 5 HOH A 127 377 135 HOH HOH . E 5 HOH A 128 378 137 HOH HOH . E 5 HOH A 129 379 138 HOH HOH . E 5 HOH A 130 380 139 HOH HOH . E 5 HOH A 131 381 140 HOH HOH . E 5 HOH A 132 382 142 HOH HOH . E 5 HOH A 133 383 144 HOH HOH . E 5 HOH A 134 384 145 HOH HOH . E 5 HOH A 135 385 146 HOH HOH . E 5 HOH A 136 386 147 HOH HOH . E 5 HOH A 137 387 148 HOH HOH . E 5 HOH A 138 388 152 HOH HOH . E 5 HOH A 139 389 153 HOH HOH . E 5 HOH A 140 390 154 HOH HOH . E 5 HOH A 141 391 155 HOH HOH . E 5 HOH A 142 392 156 HOH HOH . E 5 HOH A 143 393 157 HOH HOH . E 5 HOH A 144 394 158 HOH HOH . E 5 HOH A 145 395 159 HOH HOH . E 5 HOH A 146 396 160 HOH HOH . E 5 HOH A 147 397 161 HOH HOH . E 5 HOH A 148 398 162 HOH HOH . E 5 HOH A 149 399 163 HOH HOH . E 5 HOH A 150 400 164 HOH HOH . E 5 HOH A 151 401 165 HOH HOH . E 5 HOH A 152 402 166 HOH HOH . E 5 HOH A 153 403 167 HOH HOH . E 5 HOH A 154 404 168 HOH HOH . E 5 HOH A 155 405 169 HOH HOH . E 5 HOH A 156 406 170 HOH HOH . E 5 HOH A 157 407 171 HOH HOH . E 5 HOH A 158 408 172 HOH HOH . E 5 HOH A 159 409 173 HOH HOH . E 5 HOH A 160 410 174 HOH HOH . E 5 HOH A 161 411 175 HOH HOH . E 5 HOH A 162 412 176 HOH HOH . E 5 HOH A 163 413 177 HOH HOH . E 5 HOH A 164 414 178 HOH HOH . E 5 HOH A 165 415 179 HOH HOH . E 5 HOH A 166 416 180 HOH HOH . E 5 HOH A 167 417 181 HOH HOH . E 5 HOH A 168 418 182 HOH HOH . E 5 HOH A 169 419 183 HOH HOH . E 5 HOH A 170 420 184 HOH HOH . E 5 HOH A 171 421 185 HOH HOH . E 5 HOH A 172 422 186 HOH HOH . E 5 HOH A 173 423 187 HOH HOH . E 5 HOH A 174 424 188 HOH HOH . E 5 HOH A 175 425 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FCA . . . C 3 21.776 8.06 10.326 1 20 ? C1 FCA 247 A 1 HETATM 2 C C2 FCA . . . C 3 21.463 7.069 11.45 1 20 ? C2 FCA 247 A 1 HETATM 3 C C3 FCA . . . C 3 21.846 5.659 10.991 1 20 ? C3 FCA 247 A 1 HETATM 4 C C4 FCA . . . C 3 21.149 5.372 9.657 1 20 ? C4 FCA 247 A 1 HETATM 5 C C5 FCA . . . C 3 21.486 6.49 8.668 1 20 ? C5 FCA 247 A 1 HETATM 6 C C6 FCA . . . C 3 20.823 6.196 7.322 1 20 ? C6 FCA 247 A 1 HETATM 7 O O1 FCA . . . C 3 23.166 7.992 10.007 1 20 ? O1 FCA 247 A 1 HETATM 8 O O2 FCA . . . C 3 22.215 7.416 12.615 1 20 ? O2 FCA 247 A 1 HETATM 9 O O3 FCA . . . C 3 21.426 4.706 11.969 1 20 ? O3 FCA 247 A 1 HETATM 10 O O4 FCA . . . C 3 19.737 5.315 9.858 1 20 ? O4 FCA 247 A 1 HETATM 11 O O5 FCA . . . C 3 21.007 7.736 9.17 1 20 ? O5 FCA 247 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 11 #