data_3N35 # _model_server_result.job_id E9a6UuaQiF8Zc3tDDkApQA _model_server_result.datetime_utc '2024-11-22 15:13:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n35 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 3N35 # _exptl.entry_id 3N35 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-alpha-D-galactopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3N35 _cell.length_a 102.514 _cell.length_b 102.514 _cell.length_c 57.023 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 127 A GLU 127 1_555 B MN MN . A MN 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc2 A OD2 ASP 129 A ASP 129 1_555 B MN MN . A MN 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc3 A OD1 ASP 129 A ASP 129 1_555 C CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc4 A OD2 ASP 129 A ASP 129 1_555 C CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc5 A O PHE 131 A PHE 131 1_555 C CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc6 A OD1 ASN 133 A ASN 133 1_555 C CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc7 A OD1 ASP 136 A ASP 136 1_555 B MN MN . A MN 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc8 A OD2 ASP 136 A ASP 136 1_555 C CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc9 A NE2 HIS 142 A HIS 142 1_555 B MN MN . A MN 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc10 E O HOH . A HOH 243 1_555 B MN MN . A MN 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc11 E O HOH . A HOH 244 1_555 B MN MN . A MN 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc12 E O HOH . A HOH 245 1_555 C CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc13 E O HOH . A HOH 246 1_555 C CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id A2G _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-alpha-D-galactopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms N-acetyl-alpha-D-galactosamine;2-acetamido-2-deoxy-alpha-D-galactose;2-acetamido-2-deoxy-D-galactose;2-acetamido-2-deoxy-galactose;N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C5 A2G sing 1 n n C1 O5 A2G sing 2 n n C1 C2 A2G sing 3 n n C1 H1 A2G sing 4 n n O1 C1 A2G sing 5 n n O1 HO1 A2G sing 6 n n C2 C3 A2G sing 7 n n C2 H2 A2G sing 8 n n N2 C2 A2G sing 9 n n N2 HN2 A2G sing 10 n n C3 C4 A2G sing 11 n n C3 O3 A2G sing 12 n n C3 H3 A2G sing 13 n n O3 HO3 A2G sing 14 n n C4 O4 A2G sing 15 n n C4 H4 A2G sing 16 n n O4 HO4 A2G sing 17 n n C5 C4 A2G sing 18 n n C5 C6 A2G sing 19 n n C5 H5 A2G sing 20 n n C6 O6 A2G sing 21 n n C6 H61 A2G sing 22 n n C7 N2 A2G sing 23 n n O7 C7 A2G doub 24 n n C8 C7 A2G sing 25 n n C8 H81 A2G sing 26 n n C8 H82 A2G sing 27 n n C8 H83 A2G sing 28 n n C6 H62 A2G sing 29 n n O6 HO6 A2G sing 30 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version A2G DGalpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 A2G N-acetyl-a-D-galactopyranosamine 'COMMON NAME' GMML 1 A2G a-D-GalpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 A2G GalNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3N35 _atom_sites.fract_transf_matrix[1][1] 0.009755 _atom_sites.fract_transf_matrix[1][2] 0.005632 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017537 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 289 289 MN MN . C 3 CA A 1 290 290 CA CA . D 4 A2G A 1 401 401 A2G NGA . E 5 HOH A 1 243 1 HOH HOH . E 5 HOH A 2 244 2 HOH HOH . E 5 HOH A 3 245 3 HOH HOH . E 5 HOH A 4 246 4 HOH HOH . E 5 HOH A 5 247 5 HOH HOH . E 5 HOH A 6 248 6 HOH HOH . E 5 HOH A 7 249 7 HOH HOH . E 5 HOH A 8 250 8 HOH HOH . E 5 HOH A 9 251 9 HOH HOH . E 5 HOH A 10 252 10 HOH HOH . E 5 HOH A 11 253 11 HOH HOH . E 5 HOH A 12 254 12 HOH HOH . E 5 HOH A 13 255 13 HOH HOH . E 5 HOH A 14 256 14 HOH HOH . E 5 HOH A 15 257 15 HOH HOH . E 5 HOH A 16 258 16 HOH HOH . E 5 HOH A 17 259 17 HOH HOH . E 5 HOH A 18 260 18 HOH HOH . E 5 HOH A 19 261 19 HOH HOH . E 5 HOH A 20 262 20 HOH HOH . E 5 HOH A 21 263 21 HOH HOH . E 5 HOH A 22 264 22 HOH HOH . E 5 HOH A 23 265 23 HOH HOH . E 5 HOH A 24 266 24 HOH HOH . E 5 HOH A 25 267 25 HOH HOH . E 5 HOH A 26 268 26 HOH HOH . E 5 HOH A 27 269 27 HOH HOH . E 5 HOH A 28 270 28 HOH HOH . E 5 HOH A 29 271 29 HOH HOH . E 5 HOH A 30 272 30 HOH HOH . E 5 HOH A 31 273 31 HOH HOH . E 5 HOH A 32 274 32 HOH HOH . E 5 HOH A 33 275 33 HOH HOH . E 5 HOH A 34 276 34 HOH HOH . E 5 HOH A 35 277 35 HOH HOH . E 5 HOH A 36 278 36 HOH HOH . E 5 HOH A 37 279 37 HOH HOH . E 5 HOH A 38 280 38 HOH HOH . E 5 HOH A 39 281 39 HOH HOH . E 5 HOH A 40 282 40 HOH HOH . E 5 HOH A 41 283 41 HOH HOH . E 5 HOH A 42 284 42 HOH HOH . E 5 HOH A 43 285 43 HOH HOH . E 5 HOH A 44 286 44 HOH HOH . E 5 HOH A 45 287 45 HOH HOH . E 5 HOH A 46 288 46 HOH HOH . E 5 HOH A 47 291 47 HOH HOH . E 5 HOH A 48 292 48 HOH HOH . E 5 HOH A 49 293 49 HOH HOH . E 5 HOH A 50 294 50 HOH HOH . E 5 HOH A 51 295 51 HOH HOH . E 5 HOH A 52 296 52 HOH HOH . E 5 HOH A 53 297 53 HOH HOH . E 5 HOH A 54 298 54 HOH HOH . E 5 HOH A 55 299 55 HOH HOH . E 5 HOH A 56 300 56 HOH HOH . E 5 HOH A 57 301 57 HOH HOH . E 5 HOH A 58 302 58 HOH HOH . E 5 HOH A 59 303 59 HOH HOH . E 5 HOH A 60 304 60 HOH HOH . E 5 HOH A 61 305 61 HOH HOH . E 5 HOH A 62 306 62 HOH HOH . E 5 HOH A 63 307 63 HOH HOH . E 5 HOH A 64 308 64 HOH HOH . E 5 HOH A 65 309 65 HOH HOH . E 5 HOH A 66 310 66 HOH HOH . E 5 HOH A 67 311 67 HOH HOH . E 5 HOH A 68 312 68 HOH HOH . E 5 HOH A 69 313 69 HOH HOH . E 5 HOH A 70 314 70 HOH HOH . E 5 HOH A 71 315 71 HOH HOH . E 5 HOH A 72 316 72 HOH HOH . E 5 HOH A 73 317 73 HOH HOH . E 5 HOH A 74 318 74 HOH HOH . E 5 HOH A 75 319 75 HOH HOH . E 5 HOH A 76 320 76 HOH HOH . E 5 HOH A 77 321 77 HOH HOH . E 5 HOH A 78 322 78 HOH HOH . E 5 HOH A 79 323 79 HOH HOH . E 5 HOH A 80 324 80 HOH HOH . E 5 HOH A 81 325 81 HOH HOH . E 5 HOH A 82 326 82 HOH HOH . E 5 HOH A 83 327 83 HOH HOH . E 5 HOH A 84 328 84 HOH HOH . E 5 HOH A 85 329 85 HOH HOH . E 5 HOH A 86 330 86 HOH HOH . E 5 HOH A 87 331 87 HOH HOH . E 5 HOH A 88 332 88 HOH HOH . E 5 HOH A 89 333 89 HOH HOH . E 5 HOH A 90 334 90 HOH HOH . E 5 HOH A 91 335 91 HOH HOH . E 5 HOH A 92 336 92 HOH HOH . E 5 HOH A 93 337 93 HOH HOH . E 5 HOH A 94 338 94 HOH HOH . E 5 HOH A 95 339 95 HOH HOH . E 5 HOH A 96 340 96 HOH HOH . E 5 HOH A 97 341 97 HOH HOH . E 5 HOH A 98 342 98 HOH HOH . E 5 HOH A 99 343 99 HOH HOH . E 5 HOH A 100 344 100 HOH HOH . E 5 HOH A 101 345 101 HOH HOH . E 5 HOH A 102 346 102 HOH HOH . E 5 HOH A 103 347 103 HOH HOH . E 5 HOH A 104 348 104 HOH HOH . E 5 HOH A 105 349 105 HOH HOH . E 5 HOH A 106 350 106 HOH HOH . E 5 HOH A 107 351 107 HOH HOH . E 5 HOH A 108 352 108 HOH HOH . E 5 HOH A 109 353 109 HOH HOH . E 5 HOH A 110 354 110 HOH HOH . E 5 HOH A 111 355 111 HOH HOH . E 5 HOH A 112 356 112 HOH HOH . E 5 HOH A 113 357 113 HOH HOH . E 5 HOH A 114 358 114 HOH HOH . E 5 HOH A 115 359 115 HOH HOH . E 5 HOH A 116 360 116 HOH HOH . E 5 HOH A 117 361 117 HOH HOH . E 5 HOH A 118 362 118 HOH HOH . E 5 HOH A 119 363 119 HOH HOH . E 5 HOH A 120 364 120 HOH HOH . E 5 HOH A 121 365 121 HOH HOH . E 5 HOH A 122 366 122 HOH HOH . E 5 HOH A 123 367 123 HOH HOH . E 5 HOH A 124 368 124 HOH HOH . E 5 HOH A 125 369 125 HOH HOH . E 5 HOH A 126 370 126 HOH HOH . E 5 HOH A 127 371 127 HOH HOH . E 5 HOH A 128 372 128 HOH HOH . E 5 HOH A 129 373 129 HOH HOH . E 5 HOH A 130 374 130 HOH HOH . E 5 HOH A 131 375 131 HOH HOH . E 5 HOH A 132 376 132 HOH HOH . E 5 HOH A 133 377 133 HOH HOH . E 5 HOH A 134 378 134 HOH HOH . E 5 HOH A 135 379 135 HOH HOH . E 5 HOH A 136 380 136 HOH HOH . E 5 HOH A 137 381 137 HOH HOH . E 5 HOH A 138 382 138 HOH HOH . E 5 HOH A 139 383 139 HOH HOH . E 5 HOH A 140 384 140 HOH HOH . E 5 HOH A 141 385 141 HOH HOH . E 5 HOH A 142 386 142 HOH HOH . E 5 HOH A 143 387 143 HOH HOH . E 5 HOH A 144 388 144 HOH HOH . E 5 HOH A 145 389 145 HOH HOH . E 5 HOH A 146 390 146 HOH HOH . E 5 HOH A 147 391 147 HOH HOH . E 5 HOH A 148 392 148 HOH HOH . E 5 HOH A 149 393 149 HOH HOH . E 5 HOH A 150 394 150 HOH HOH . E 5 HOH A 151 395 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 A2G . . . D 4 -38.142 -30.968 -4.499 1 35.89 ? O5 A2G 401 A 1 HETATM 2 C C1 A2G . . . D 4 -39.571 -31.037 -4.482 1 36.87 ? C1 A2G 401 A 1 HETATM 3 O O1 A2G . . . D 4 -40.024 -31.378 -5.81 1 38.31 ? O1 A2G 401 A 1 HETATM 4 C C2 A2G . . . D 4 -40.101 -29.657 -4.058 1 35.71 ? C2 A2G 401 A 1 HETATM 5 N N2 A2G . . . D 4 -41.546 -29.686 -4.215 1 36.32 ? N2 A2G 401 A 1 HETATM 6 C C3 A2G . . . D 4 -39.582 -28.581 -5.016 1 34.28 ? C3 A2G 401 A 1 HETATM 7 O O3 A2G . . . D 4 -39.942 -27.292 -4.534 1 31.19 ? O3 A2G 401 A 1 HETATM 8 C C4 A2G . . . D 4 -38.06 -28.661 -5.153 1 34.01 ? C4 A2G 401 A 1 HETATM 9 O O4 A2G . . . D 4 -37.48 -28.316 -3.89 1 34 ? O4 A2G 401 A 1 HETATM 10 C C5 A2G . . . D 4 -37.637 -30.081 -5.503 1 35.07 ? C5 A2G 401 A 1 HETATM 11 C C6 A2G . . . D 4 -36.123 -30.221 -5.558 1 34.53 ? C6 A2G 401 A 1 HETATM 12 O O6 A2G . . . D 4 -35.842 -31.031 -6.693 1 35.41 ? O6 A2G 401 A 1 HETATM 13 C C7 A2G . . . D 4 -42.366 -29.198 -3.266 1 36.91 ? C7 A2G 401 A 1 HETATM 14 O O7 A2G . . . D 4 -41.958 -28.705 -2.226 1 37.05 ? O7 A2G 401 A 1 HETATM 15 C C8 A2G . . . D 4 -43.837 -29.293 -3.55 1 36.9 ? C8 A2G 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 15 #