data_3N38 # _model_server_result.job_id xz2feERmblV0Ih2F9MqIjA _model_server_result.datetime_utc '2024-11-23 00:37:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":320}' # _entry.id 3N38 # _exptl.entry_id 3N38 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3N38 _cell.length_a 79.137 _cell.length_b 79.137 _cell.length_c 267.981 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_554 x,x-y,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 -44.6635 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 67 A ASP 67 1_555 B FE FE2 . A FE2 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc2 A OE1 GLU 98 A GLU 98 1_555 B FE FE2 . A FE2 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc3 A OE2 GLU 98 A GLU 98 1_555 C FE FE2 . A FE2 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc4 A ND1 HIS 101 A HIS 101 1_555 B FE FE2 . A FE2 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc5 A OE1 GLU 158 A GLU 158 1_555 C FE FE2 . A FE2 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc6 A OE2 GLU 158 A GLU 158 1_555 C FE FE2 . A FE2 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc7 A OE2 GLU 192 A GLU 192 1_555 B FE FE2 . A FE2 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.757 ? metalc ? metalc8 A OE1 GLU 192 A GLU 192 1_555 C FE FE2 . A FE2 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc9 A ND1 HIS 195 A HIS 195 1_555 C FE FE2 . A FE2 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? # _chem_comp.formula 'Fe 2' _chem_comp.formula_weight 55.845 _chem_comp.id FE2 _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3N38 _atom_sites.fract_transf_matrix[1][1] 0.012636 _atom_sites.fract_transf_matrix[1][2] 0.007296 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014591 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003732 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE2 A 1 320 1 FE2 FE2 . C 2 FE2 A 1 321 1 FE2 FE2 . D 3 HOH A 1 322 36 HOH HOH . D 3 HOH A 2 323 37 HOH HOH . D 3 HOH A 3 324 38 HOH HOH . D 3 HOH A 4 325 39 HOH HOH . D 3 HOH A 5 326 40 HOH HOH . D 3 HOH A 6 327 41 HOH HOH . D 3 HOH A 7 328 42 HOH HOH . D 3 HOH A 8 329 43 HOH HOH . D 3 HOH A 9 330 44 HOH HOH . D 3 HOH A 10 331 45 HOH HOH . D 3 HOH A 11 332 46 HOH HOH . D 3 HOH A 12 333 47 HOH HOH . D 3 HOH A 13 334 48 HOH HOH . D 3 HOH A 14 335 49 HOH HOH . D 3 HOH A 15 336 50 HOH HOH . D 3 HOH A 16 337 51 HOH HOH . D 3 HOH A 17 338 52 HOH HOH . D 3 HOH A 18 339 53 HOH HOH . D 3 HOH A 19 340 54 HOH HOH . D 3 HOH A 20 341 55 HOH HOH . D 3 HOH A 21 342 56 HOH HOH . D 3 HOH A 22 343 57 HOH HOH . D 3 HOH A 23 344 58 HOH HOH . D 3 HOH A 24 345 59 HOH HOH . D 3 HOH A 25 346 60 HOH HOH . D 3 HOH A 26 347 61 HOH HOH . D 3 HOH A 27 348 62 HOH HOH . D 3 HOH A 28 349 63 HOH HOH . D 3 HOH A 29 350 64 HOH HOH . D 3 HOH A 30 351 65 HOH HOH . D 3 HOH A 31 352 66 HOH HOH . D 3 HOH A 32 353 67 HOH HOH . D 3 HOH A 33 354 68 HOH HOH . D 3 HOH A 34 355 69 HOH HOH . D 3 HOH A 35 356 70 HOH HOH . D 3 HOH A 36 357 71 HOH HOH . D 3 HOH A 37 358 72 HOH HOH . D 3 HOH A 38 359 73 HOH HOH . D 3 HOH A 39 360 74 HOH HOH . D 3 HOH A 40 361 75 HOH HOH . D 3 HOH A 41 362 76 HOH HOH . D 3 HOH A 42 363 77 HOH HOH . D 3 HOH A 43 364 78 HOH HOH . D 3 HOH A 44 365 79 HOH HOH . D 3 HOH A 45 366 80 HOH HOH . D 3 HOH A 46 367 81 HOH HOH . D 3 HOH A 47 368 82 HOH HOH . D 3 HOH A 48 369 83 HOH HOH . D 3 HOH A 49 370 84 HOH HOH . D 3 HOH A 50 371 85 HOH HOH . D 3 HOH A 51 372 86 HOH HOH . D 3 HOH A 52 373 87 HOH HOH . D 3 HOH A 53 374 88 HOH HOH . D 3 HOH A 54 375 89 HOH HOH . D 3 HOH A 55 376 90 HOH HOH . D 3 HOH A 56 377 91 HOH HOH . D 3 HOH A 57 378 92 HOH HOH . D 3 HOH A 58 379 93 HOH HOH . D 3 HOH A 59 380 94 HOH HOH . D 3 HOH A 60 381 95 HOH HOH . D 3 HOH A 61 382 96 HOH HOH . D 3 HOH A 62 383 97 HOH HOH . D 3 HOH A 63 384 98 HOH HOH . D 3 HOH A 64 385 99 HOH HOH . D 3 HOH A 65 386 100 HOH HOH . D 3 HOH A 66 387 101 HOH HOH . D 3 HOH A 67 388 102 HOH HOH . D 3 HOH A 68 389 103 HOH HOH . D 3 HOH A 69 390 104 HOH HOH . D 3 HOH A 70 391 105 HOH HOH . D 3 HOH A 71 392 106 HOH HOH . D 3 HOH A 72 393 107 HOH HOH . D 3 HOH A 73 394 108 HOH HOH . D 3 HOH A 74 395 109 HOH HOH . D 3 HOH A 75 396 110 HOH HOH . D 3 HOH A 76 397 111 HOH HOH . D 3 HOH A 77 398 112 HOH HOH . D 3 HOH A 78 399 113 HOH HOH . D 3 HOH A 79 400 114 HOH HOH . D 3 HOH A 80 401 115 HOH HOH . D 3 HOH A 81 402 116 HOH HOH . D 3 HOH A 82 403 117 HOH HOH . D 3 HOH A 83 404 118 HOH HOH . D 3 HOH A 84 405 119 HOH HOH . D 3 HOH A 85 406 120 HOH HOH . D 3 HOH A 86 407 121 HOH HOH . D 3 HOH A 87 408 122 HOH HOH . D 3 HOH A 88 409 123 HOH HOH . D 3 HOH A 89 410 124 HOH HOH . D 3 HOH A 90 411 125 HOH HOH . D 3 HOH A 91 412 126 HOH HOH . D 3 HOH A 92 413 127 HOH HOH . D 3 HOH A 93 414 128 HOH HOH . D 3 HOH A 94 415 129 HOH HOH . D 3 HOH A 95 416 130 HOH HOH . D 3 HOH A 96 417 131 HOH HOH . D 3 HOH A 97 418 132 HOH HOH . D 3 HOH A 98 419 133 HOH HOH . D 3 HOH A 99 420 134 HOH HOH . D 3 HOH A 100 421 135 HOH HOH . D 3 HOH A 101 422 136 HOH HOH . D 3 HOH A 102 423 137 HOH HOH . D 3 HOH A 103 424 138 HOH HOH . D 3 HOH A 104 425 139 HOH HOH . D 3 HOH A 105 426 140 HOH HOH . D 3 HOH A 106 427 141 HOH HOH . D 3 HOH A 107 428 142 HOH HOH . D 3 HOH A 108 429 143 HOH HOH . D 3 HOH A 109 430 144 HOH HOH . D 3 HOH A 110 431 145 HOH HOH . D 3 HOH A 111 432 146 HOH HOH . D 3 HOH A 112 433 147 HOH HOH . D 3 HOH A 113 434 148 HOH HOH . D 3 HOH A 114 435 149 HOH HOH . D 3 HOH A 115 436 150 HOH HOH . D 3 HOH A 116 437 151 HOH HOH . D 3 HOH A 117 438 152 HOH HOH . D 3 HOH A 118 439 153 HOH HOH . D 3 HOH A 119 440 154 HOH HOH . D 3 HOH A 120 441 2 HOH HOH . D 3 HOH A 121 442 3 HOH HOH . D 3 HOH A 122 443 4 HOH HOH . D 3 HOH A 123 444 1 HOH HOH . D 3 HOH A 124 445 5 HOH HOH . D 3 HOH A 125 446 6 HOH HOH . D 3 HOH A 126 447 7 HOH HOH . D 3 HOH A 127 448 8 HOH HOH . D 3 HOH A 128 449 9 HOH HOH . D 3 HOH A 129 450 10 HOH HOH . D 3 HOH A 130 451 11 HOH HOH . D 3 HOH A 131 452 12 HOH HOH . D 3 HOH A 132 453 13 HOH HOH . D 3 HOH A 133 454 14 HOH HOH . D 3 HOH A 134 455 15 HOH HOH . D 3 HOH A 135 456 16 HOH HOH . D 3 HOH A 136 457 17 HOH HOH . D 3 HOH A 137 458 18 HOH HOH . D 3 HOH A 138 459 19 HOH HOH . D 3 HOH A 139 460 20 HOH HOH . D 3 HOH A 140 461 21 HOH HOH . D 3 HOH A 141 462 22 HOH HOH . D 3 HOH A 142 463 23 HOH HOH . D 3 HOH A 143 464 24 HOH HOH . D 3 HOH A 144 465 25 HOH HOH . D 3 HOH A 145 466 26 HOH HOH . D 3 HOH A 146 467 27 HOH HOH . D 3 HOH A 147 468 28 HOH HOH . D 3 HOH A 148 469 29 HOH HOH . D 3 HOH A 149 470 30 HOH HOH . D 3 HOH A 150 471 31 HOH HOH . D 3 HOH A 151 472 32 HOH HOH . D 3 HOH A 152 473 33 HOH HOH . D 3 HOH A 153 474 34 HOH HOH . D 3 HOH A 154 475 35 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE2 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 24.55 _atom_site.Cartn_y 23.17 _atom_site.Cartn_z -12.685 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 38.12 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE2 _atom_site.auth_seq_id 320 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #