data_3N39
#
_model_server_result.job_id            V1SxdB3QFiVzzaz8ThOfNg 
_model_server_result.datetime_utc      '2024-11-22 19:13:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3n39 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":134}' 
#
_entry.id    3N39 
#
_exptl.entry_id    3N39 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3N39 
_cell.length_a            75.403 
_cell.length_b            90.721 
_cell.length_c            143.787 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3N39 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 67 B ASP 67 1_555 E MN MN . B MN 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc2 A OE1 GLU 98 B GLU 98 1_555 E MN MN . B MN 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? 
metalc ? metalc3 A OE2 GLU 98 B GLU 98 1_555 F MN MN . B MN 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc4 A ND1 HIS 101 B HIS 101 1_555 E MN MN . B MN 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc5 A OE1 GLU 158 B GLU 158 1_555 E MN MN . B MN 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc6 A OE2 GLU 158 B GLU 158 1_555 F MN MN . B MN 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc7 A OE2 GLU 192 B GLU 192 1_555 E MN MN . B MN 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc8 A OE1 GLU 192 B GLU 192 1_555 F MN MN . B MN 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc9 A OE2 GLU 192 B GLU 192 1_555 F MN MN . B MN 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? 
metalc ? metalc10 A ND1 HIS 195 B HIS 195 1_555 F MN MN . B MN 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc11 E MN MN . B MN 320 1_555 K O HOH . B HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc12 F MN MN . B MN 321 1_555 K O HOH . B HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc13 C OD1 ASP 67 A ASP 67 1_555 I MN MN . A MN 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc14 C OE2 GLU 98 A GLU 98 1_555 H MN MN . A MN 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc15 C OE1 GLU 98 A GLU 98 1_555 I MN MN . A MN 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? 
metalc ? metalc16 C ND1 HIS 101 A HIS 101 1_555 I MN MN . A MN 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc17 C OE2 GLU 158 A GLU 158 1_555 H MN MN . A MN 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc18 C OE1 GLU 158 A GLU 158 1_555 I MN MN . A MN 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc19 C OE1 GLU 192 A GLU 192 1_555 H MN MN . A MN 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc20 C OE2 GLU 192 A GLU 192 1_555 H MN MN . A MN 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc21 C OE2 GLU 192 A GLU 192 1_555 I MN MN . A MN 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc22 C ND1 HIS 195 A HIS 195 1_555 H MN MN . A MN 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc23 H MN MN . A MN 320 1_555 M O HOH . A HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc24 I MN MN . A MN 321 1_555 M O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 83 n n 
N1 C10 FMN doub 84 n n 
C2 O2 FMN doub 85 n n 
C2 N3 FMN sing 86 n n 
N3 C4 FMN sing 87 n n 
N3 HN3 FMN sing 88 n n 
C4 O4 FMN doub 89 n n 
C4 C4A FMN sing 90 n n 
C4A N5 FMN doub 91 n n 
C4A C10 FMN sing 92 n n 
N5 C5A FMN sing 93 n n 
C5A C6 FMN doub 94 n y 
C5A C9A FMN sing 95 n y 
C6 C7 FMN sing 96 n y 
C6 H6 FMN sing 97 n n 
C7 C7M FMN sing 98 n n 
C7 C8 FMN doub 99 n y 
C7M HM71 FMN sing 100 n n 
C7M HM72 FMN sing 101 n n 
C7M HM73 FMN sing 102 n n 
C8 C8M FMN sing 103 n n 
C8 C9 FMN sing 104 n y 
C8M HM81 FMN sing 105 n n 
C8M HM82 FMN sing 106 n n 
C8M HM83 FMN sing 107 n n 
C9 C9A FMN doub 108 n y 
C9 H9 FMN sing 109 n n 
C9A N10 FMN sing 110 n n 
N10 C10 FMN sing 111 n n 
N10 C1' FMN sing 112 n n 
C1' C2' FMN sing 113 n n 
C1' "H1'1" FMN sing 114 n n 
C1' "H1'2" FMN sing 115 n n 
C2' O2' FMN sing 116 n n 
C2' C3' FMN sing 117 n n 
C2' H2' FMN sing 118 n n 
O2' HO2' FMN sing 119 n n 
C3' O3' FMN sing 120 n n 
C3' C4' FMN sing 121 n n 
C3' H3' FMN sing 122 n n 
O3' HO3' FMN sing 123 n n 
C4' O4' FMN sing 124 n n 
C4' C5' FMN sing 125 n n 
C4' H4' FMN sing 126 n n 
O4' HO4' FMN sing 127 n n 
C5' O5' FMN sing 128 n n 
C5' "H5'1" FMN sing 129 n n 
C5' "H5'2" FMN sing 130 n n 
O5' P FMN sing 131 n n 
P O1P FMN doub 132 n n 
P O2P FMN sing 133 n n 
P O3P FMN sing 134 n n 
O2P HOP2 FMN sing 135 n n 
O3P HOP3 FMN sing 136 n n 
#
_atom_sites.entry_id                     3N39 
_atom_sites.fract_transf_matrix[1][1]    0.013262 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011023 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006955 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MN B 1 320 1 MN MN . 
F 3 MN B 1 321 1 MN MN . 
G 4 FMN C 1 134 1 FMN FMN . 
H 3 MN A 1 320 1 MN MN . 
I 3 MN A 1 321 1 MN MN . 
J 4 FMN D 1 134 1 FMN FMN . 
K 5 HOH B 1 322 4 HOH HOH . 
K 5 HOH B 2 323 1 HOH HOH . 
K 5 HOH B 3 324 5 HOH HOH . 
K 5 HOH B 4 325 6 HOH HOH . 
K 5 HOH B 5 326 8 HOH HOH . 
K 5 HOH B 6 327 12 HOH HOH . 
K 5 HOH B 7 328 13 HOH HOH . 
K 5 HOH B 8 329 14 HOH HOH . 
K 5 HOH B 9 330 16 HOH HOH . 
K 5 HOH B 10 331 17 HOH HOH . 
K 5 HOH B 11 332 18 HOH HOH . 
L 5 HOH C 1 135 9 HOH HOH . 
M 5 HOH A 1 322 2 HOH HOH . 
M 5 HOH A 2 323 3 HOH HOH . 
M 5 HOH A 3 324 7 HOH HOH . 
M 5 HOH A 4 325 10 HOH HOH . 
M 5 HOH A 5 326 15 HOH HOH . 
M 5 HOH A 6 327 19 HOH HOH . 
N 5 HOH D 1 135 20 HOH HOH . 
N 5 HOH D 2 136 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . J 4 -34.811 -58.458 18.745 1 45.64 ? N1 FMN 134 D 1 
HETATM 2 C C2 FMN . . . J 4 -36.072 -58.156 19.221 1 45.97 ? C2 FMN 134 D 1 
HETATM 3 O O2 FMN . . . J 4 -36.664 -58.958 19.938 1 46.67 ? O2 FMN 134 D 1 
HETATM 4 N N3 FMN . . . J 4 -36.673 -56.956 18.895 1 46.07 ? N3 FMN 134 D 1 
HETATM 5 C C4 FMN . . . J 4 -36.013 -56.049 18.088 1 46.08 ? C4 FMN 134 D 1 
HETATM 6 O O4 FMN . . . J 4 -36.557 -54.982 17.803 1 46.32 ? O4 FMN 134 D 1 
HETATM 7 C C4A FMN . . . J 4 -34.742 -56.347 17.604 1 45.89 ? C4A FMN 134 D 1 
HETATM 8 N N5 FMN . . . J 4 -34.076 -55.445 16.799 1 46.07 ? N5 FMN 134 D 1 
HETATM 9 C C5A FMN . . . J 4 -32.815 -55.736 16.317 1 46.02 ? C5A FMN 134 D 1 
HETATM 10 C C6 FMN . . . J 4 -32.163 -54.809 15.505 1 46 ? C6 FMN 134 D 1 
HETATM 11 C C7 FMN . . . J 4 -30.89 -55.078 15.008 1 46.27 ? C7 FMN 134 D 1 
HETATM 12 C C7M FMN . . . J 4 -30.214 -54.058 14.133 1 46.28 ? C7M FMN 134 D 1 
HETATM 13 C C8 FMN . . . J 4 -30.268 -56.289 15.331 1 46.59 ? C8 FMN 134 D 1 
HETATM 14 C C8M FMN . . . J 4 -28.898 -56.622 14.817 1 46.6 ? C8M FMN 134 D 1 
HETATM 15 C C9 FMN . . . J 4 -30.923 -57.215 16.146 1 46.51 ? C9 FMN 134 D 1 
HETATM 16 C C9A FMN . . . J 4 -32.202 -56.949 16.645 1 46.25 ? C9A FMN 134 D 1 
HETATM 17 N N10 FMN . . . J 4 -32.871 -57.865 17.456 1 46.26 ? N10 FMN 134 D 1 
HETATM 18 C C10 FMN . . . J 4 -34.138 -57.561 17.935 1 46.02 ? C10 FMN 134 D 1 
HETATM 19 C C1' FMN . . . J 4 -32.242 -59.182 17.834 1 46.3 ? C1' FMN 134 D 1 
HETATM 20 C C2' FMN . . . J 4 -32.494 -60.235 16.755 1 46.6 ? C2' FMN 134 D 1 
HETATM 21 O O2' FMN . . . J 4 -33.883 -60.398 16.584 1 46.39 ? O2' FMN 134 D 1 
HETATM 22 C C3' FMN . . . J 4 -31.83 -61.568 17.109 1 47.04 ? C3' FMN 134 D 1 
HETATM 23 O O3' FMN . . . J 4 -30.425 -61.415 17.129 1 47.28 ? O3' FMN 134 D 1 
HETATM 24 C C4' FMN . . . J 4 -32.2 -62.718 16.168 1 47.61 ? C4' FMN 134 D 1 
HETATM 25 O O4' FMN . . . J 4 -31.67 -63.906 16.71 1 47.54 ? O4' FMN 134 D 1 
HETATM 26 C C5' FMN . . . J 4 -31.683 -62.544 14.738 1 48 ? C5' FMN 134 D 1 
HETATM 27 O O5' FMN . . . J 4 -31.972 -63.698 13.975 1 48.55 ? O5' FMN 134 D 1 
HETATM 28 P P FMN . . . J 4 -31.176 -64.022 12.61 1 48.95 ? P FMN 134 D 1 
HETATM 29 O O1P FMN . . . J 4 -29.717 -64.249 12.919 1 48.45 ? O1P FMN 134 D 1 
HETATM 30 O O2P FMN . . . J 4 -31.328 -62.863 11.658 1 49.25 ? O2P FMN 134 D 1 
HETATM 31 O O3P FMN . . . J 4 -31.742 -65.268 11.972 1 49.28 ? O3P FMN 134 D 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           31 
#