data_3N3H # _model_server_result.job_id HXEMRGPH2JeEKKrRAZNAjg _model_server_result.datetime_utc '2024-11-22 21:04:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n3h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":323}' # _entry.id 3N3H # _exptl.entry_id 3N3H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3N3H _cell.length_a 102.784 _cell.length_b 102.784 _cell.length_c 56.975 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N3H _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 127 A GLU 127 1_555 B MN MN . A MN 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc2 A OD2 ASP 129 A ASP 129 1_555 B MN MN . A MN 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc3 A OD1 ASP 129 A ASP 129 1_555 C CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc4 A OD2 ASP 129 A ASP 129 1_555 C CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc5 A O PHE 131 A PHE 131 1_555 C CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc6 A OD1 ASN 133 A ASN 133 1_555 C CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc7 A OD1 ASP 136 A ASP 136 1_555 B MN MN . A MN 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc8 A OD2 ASP 136 A ASP 136 1_555 C CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc9 A NE2 HIS 142 A HIS 142 1_555 B MN MN . A MN 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc10 E O HOH . A HOH 243 1_555 B MN MN . A MN 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc11 E O HOH . A HOH 244 1_555 B MN MN . A MN 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc12 E O HOH . A HOH 245 1_555 C CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc13 E O HOH . A HOH 246 1_555 C CA CA . A CA 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 3N3H _atom_sites.fract_transf_matrix[1][1] 0.009729 _atom_sites.fract_transf_matrix[1][2] 0.005617 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017552 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 289 289 MN MN . C 3 CA A 1 290 290 CA CA . D 4 CIT A 1 323 323 CIT CIT . E 5 HOH A 1 243 1 HOH HOH . E 5 HOH A 2 244 2 HOH HOH . E 5 HOH A 3 245 3 HOH HOH . E 5 HOH A 4 246 4 HOH HOH . E 5 HOH A 5 247 5 HOH HOH . E 5 HOH A 6 248 6 HOH HOH . E 5 HOH A 7 249 7 HOH HOH . E 5 HOH A 8 250 8 HOH HOH . E 5 HOH A 9 251 9 HOH HOH . E 5 HOH A 10 252 10 HOH HOH . E 5 HOH A 11 253 11 HOH HOH . E 5 HOH A 12 254 12 HOH HOH . E 5 HOH A 13 255 13 HOH HOH . E 5 HOH A 14 256 14 HOH HOH . E 5 HOH A 15 257 15 HOH HOH . E 5 HOH A 16 258 16 HOH HOH . E 5 HOH A 17 259 17 HOH HOH . E 5 HOH A 18 260 18 HOH HOH . E 5 HOH A 19 261 19 HOH HOH . E 5 HOH A 20 262 20 HOH HOH . E 5 HOH A 21 263 21 HOH HOH . E 5 HOH A 22 264 22 HOH HOH . E 5 HOH A 23 265 23 HOH HOH . E 5 HOH A 24 266 24 HOH HOH . E 5 HOH A 25 267 25 HOH HOH . E 5 HOH A 26 268 26 HOH HOH . E 5 HOH A 27 269 27 HOH HOH . E 5 HOH A 28 270 28 HOH HOH . E 5 HOH A 29 271 29 HOH HOH . E 5 HOH A 30 272 30 HOH HOH . E 5 HOH A 31 273 31 HOH HOH . E 5 HOH A 32 274 32 HOH HOH . E 5 HOH A 33 275 33 HOH HOH . E 5 HOH A 34 276 34 HOH HOH . E 5 HOH A 35 277 35 HOH HOH . E 5 HOH A 36 278 36 HOH HOH . E 5 HOH A 37 279 37 HOH HOH . E 5 HOH A 38 280 38 HOH HOH . E 5 HOH A 39 281 39 HOH HOH . E 5 HOH A 40 282 40 HOH HOH . E 5 HOH A 41 283 41 HOH HOH . E 5 HOH A 42 284 42 HOH HOH . E 5 HOH A 43 285 43 HOH HOH . E 5 HOH A 44 286 44 HOH HOH . E 5 HOH A 45 287 45 HOH HOH . E 5 HOH A 46 288 46 HOH HOH . E 5 HOH A 47 291 47 HOH HOH . E 5 HOH A 48 292 48 HOH HOH . E 5 HOH A 49 293 49 HOH HOH . E 5 HOH A 50 294 50 HOH HOH . E 5 HOH A 51 295 51 HOH HOH . E 5 HOH A 52 296 52 HOH HOH . E 5 HOH A 53 297 53 HOH HOH . E 5 HOH A 54 298 54 HOH HOH . E 5 HOH A 55 299 55 HOH HOH . E 5 HOH A 56 300 56 HOH HOH . E 5 HOH A 57 301 57 HOH HOH . E 5 HOH A 58 302 58 HOH HOH . E 5 HOH A 59 303 59 HOH HOH . E 5 HOH A 60 304 60 HOH HOH . E 5 HOH A 61 305 61 HOH HOH . E 5 HOH A 62 306 62 HOH HOH . E 5 HOH A 63 307 63 HOH HOH . E 5 HOH A 64 308 64 HOH HOH . E 5 HOH A 65 309 65 HOH HOH . E 5 HOH A 66 310 66 HOH HOH . E 5 HOH A 67 311 67 HOH HOH . E 5 HOH A 68 312 68 HOH HOH . E 5 HOH A 69 313 69 HOH HOH . E 5 HOH A 70 314 70 HOH HOH . E 5 HOH A 71 315 71 HOH HOH . E 5 HOH A 72 316 72 HOH HOH . E 5 HOH A 73 317 73 HOH HOH . E 5 HOH A 74 318 74 HOH HOH . E 5 HOH A 75 319 75 HOH HOH . E 5 HOH A 76 320 76 HOH HOH . E 5 HOH A 77 321 77 HOH HOH . E 5 HOH A 78 322 78 HOH HOH . E 5 HOH A 79 324 79 HOH HOH . E 5 HOH A 80 325 80 HOH HOH . E 5 HOH A 81 326 81 HOH HOH . E 5 HOH A 82 327 82 HOH HOH . E 5 HOH A 83 328 83 HOH HOH . E 5 HOH A 84 329 84 HOH HOH . E 5 HOH A 85 330 85 HOH HOH . E 5 HOH A 86 331 86 HOH HOH . E 5 HOH A 87 332 87 HOH HOH . E 5 HOH A 88 333 88 HOH HOH . E 5 HOH A 89 334 89 HOH HOH . E 5 HOH A 90 335 90 HOH HOH . E 5 HOH A 91 336 91 HOH HOH . E 5 HOH A 92 337 92 HOH HOH . E 5 HOH A 93 338 93 HOH HOH . E 5 HOH A 94 339 94 HOH HOH . E 5 HOH A 95 340 95 HOH HOH . E 5 HOH A 96 341 96 HOH HOH . E 5 HOH A 97 342 97 HOH HOH . E 5 HOH A 98 343 98 HOH HOH . E 5 HOH A 99 344 99 HOH HOH . E 5 HOH A 100 345 100 HOH HOH . E 5 HOH A 101 346 101 HOH HOH . E 5 HOH A 102 347 102 HOH HOH . E 5 HOH A 103 348 103 HOH HOH . E 5 HOH A 104 349 104 HOH HOH . E 5 HOH A 105 350 105 HOH HOH . E 5 HOH A 106 351 106 HOH HOH . E 5 HOH A 107 352 107 HOH HOH . E 5 HOH A 108 353 108 HOH HOH . E 5 HOH A 109 354 109 HOH HOH . E 5 HOH A 110 355 110 HOH HOH . E 5 HOH A 111 356 111 HOH HOH . E 5 HOH A 112 357 112 HOH HOH . E 5 HOH A 113 358 113 HOH HOH . E 5 HOH A 114 359 114 HOH HOH . E 5 HOH A 115 360 115 HOH HOH . E 5 HOH A 116 361 116 HOH HOH . E 5 HOH A 117 362 117 HOH HOH . E 5 HOH A 118 363 118 HOH HOH . E 5 HOH A 119 364 119 HOH HOH . E 5 HOH A 120 365 120 HOH HOH . E 5 HOH A 121 366 121 HOH HOH . E 5 HOH A 122 367 122 HOH HOH . E 5 HOH A 123 368 123 HOH HOH . E 5 HOH A 124 369 124 HOH HOH . E 5 HOH A 125 370 125 HOH HOH . E 5 HOH A 126 371 126 HOH HOH . E 5 HOH A 127 372 127 HOH HOH . E 5 HOH A 128 373 128 HOH HOH . E 5 HOH A 129 374 129 HOH HOH . E 5 HOH A 130 375 130 HOH HOH . E 5 HOH A 131 376 131 HOH HOH . E 5 HOH A 132 377 132 HOH HOH . E 5 HOH A 133 378 133 HOH HOH . E 5 HOH A 134 379 134 HOH HOH . E 5 HOH A 135 380 135 HOH HOH . E 5 HOH A 136 381 136 HOH HOH . E 5 HOH A 137 382 137 HOH HOH . E 5 HOH A 138 383 138 HOH HOH . E 5 HOH A 139 384 139 HOH HOH . E 5 HOH A 140 385 140 HOH HOH . E 5 HOH A 141 386 141 HOH HOH . E 5 HOH A 142 387 142 HOH HOH . E 5 HOH A 143 388 143 HOH HOH . E 5 HOH A 144 389 144 HOH HOH . E 5 HOH A 145 390 145 HOH HOH . E 5 HOH A 146 391 146 HOH HOH . E 5 HOH A 147 392 147 HOH HOH . E 5 HOH A 148 393 148 HOH HOH . E 5 HOH A 149 394 149 HOH HOH . E 5 HOH A 150 395 150 HOH HOH . E 5 HOH A 151 396 151 HOH HOH . E 5 HOH A 152 397 152 HOH HOH . E 5 HOH A 153 398 153 HOH HOH . E 5 HOH A 154 399 154 HOH HOH . E 5 HOH A 155 400 155 HOH HOH . E 5 HOH A 156 401 156 HOH HOH . E 5 HOH A 157 402 157 HOH HOH . E 5 HOH A 158 403 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . D 4 -38.822 -32.535 -5.917 1 50.31 ? C1 CIT 323 A 1 HETATM 2 O O1 CIT . . . D 4 -38.739 -33.117 -4.841 1 49.71 ? O1 CIT 323 A 1 HETATM 3 O O2 CIT . . . D 4 -38.767 -33.201 -6.968 1 50.87 ? O2 CIT 323 A 1 HETATM 4 C C2 CIT . . . D 4 -39.013 -31.029 -6.004 1 48.99 ? C2 CIT 323 A 1 HETATM 5 C C3 CIT . . . D 4 -38.137 -30.263 -5.022 1 48.31 ? C3 CIT 323 A 1 HETATM 6 O O7 CIT . . . D 4 -38.442 -30.795 -3.734 1 48.28 ? O7 CIT 323 A 1 HETATM 7 C C4 CIT . . . D 4 -38.398 -28.746 -4.978 1 47.74 ? C4 CIT 323 A 1 HETATM 8 C C5 CIT . . . D 4 -39.841 -28.392 -4.713 1 47.36 ? C5 CIT 323 A 1 HETATM 9 O O3 CIT . . . D 4 -40.706 -29.271 -4.594 1 47.91 ? O3 CIT 323 A 1 HETATM 10 O O4 CIT . . . D 4 -40.209 -27.24 -4.638 1 45.88 ? O4 CIT 323 A 1 HETATM 11 C C6 CIT . . . D 4 -36.671 -30.518 -5.364 1 48.29 ? C6 CIT 323 A 1 HETATM 12 O O5 CIT . . . D 4 -35.837 -30.753 -4.504 1 46.76 ? O5 CIT 323 A 1 HETATM 13 O O6 CIT . . . D 4 -36.307 -30.495 -6.526 1 47.95 ? O6 CIT 323 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #