data_3N3I # _model_server_result.job_id 7edwXEyukFczn7VfB6ckgg _model_server_result.datetime_utc '2025-03-05 01:34:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n3i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 3N3I # _exptl.entry_id 3N3I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 670.841 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3N3I _cell.length_a 62.41 _cell.length_b 62.41 _cell.length_c 83.26 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N3I _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C38 H50 N6 O5' _chem_comp.formula_weight 670.841 _chem_comp.id ROC _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms 'Fortovase;SAQUINAVIR;RO 31-8959' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C ROC doub 277 n n C C2 ROC sing 278 n n N1 C2 ROC doub 279 n y N1 C8A ROC sing 280 n y C2 C3 ROC sing 281 n y C3 C4 ROC doub 282 n y C3 H3 ROC sing 283 n n C4 C4A ROC sing 284 n y C4 H4 ROC sing 285 n n C4A C5 ROC doub 286 n y C4A C8A ROC sing 287 n y C5 C6 ROC sing 288 n y C5 H5 ROC sing 289 n n C6 C7 ROC doub 290 n y C6 H6 ROC sing 291 n n C7 C8 ROC sing 292 n y C7 H7 ROC sing 293 n n C8 C8A ROC doub 294 n y C8 H8 ROC sing 295 n n N CA ROC sing 296 n n N H ROC sing 297 n n CA C1 ROC sing 298 n n CA CB ROC sing 299 n n CA HA ROC sing 300 n n C1 O1 ROC doub 301 n n CB CG ROC sing 302 n n CB HB2 ROC sing 303 n n CB HB3 ROC sing 304 n n CG OD1 ROC doub 305 n n CG ND2 ROC sing 306 n n ND2 HD21 ROC sing 307 n n ND2 HD22 ROC sing 308 n n C9 O2 ROC sing 309 n n C9 CA1 ROC sing 310 n n C9 HC ROC sing 311 n n O2 HO ROC sing 312 n n CA1 N2 ROC sing 313 n n CA1 CB1 ROC sing 314 n n CA1 HA1 ROC sing 315 n n N2 H1 ROC sing 316 n n CB1 CG1 ROC sing 317 n n CB1 HB21 ROC sing 318 n n CB1 HB31 ROC sing 319 n n CG1 CD1 ROC doub 320 n y CG1 CD2 ROC sing 321 n y CD1 CE1 ROC sing 322 n y CD1 HD1 ROC sing 323 n n CD2 CE2 ROC doub 324 n y CD2 HD2 ROC sing 325 n n CE1 CZ ROC doub 326 n y CE1 HE1 ROC sing 327 n n CE2 CZ ROC sing 328 n y CE2 HE2 ROC sing 329 n n CZ HZ ROC sing 330 n n N11 CM ROC sing 331 n n N11 C21 ROC sing 332 n n N11 C81 ROC sing 333 n n CM HM1 ROC sing 334 n n CM HM2 ROC sing 335 n n C21 CC ROC sing 336 n n C21 C31 ROC sing 337 n n C21 H2 ROC sing 338 n n CC O3 ROC doub 339 n n C31 C3A ROC sing 340 n n C31 H31 ROC sing 341 n n C31 H32 ROC sing 342 n n C3A C41 ROC sing 343 n n C3A C7A ROC sing 344 n n C3A H3A ROC sing 345 n n C41 C51 ROC sing 346 n n C41 H41 ROC sing 347 n n C41 H42 ROC sing 348 n n C51 C61 ROC sing 349 n n C51 H51 ROC sing 350 n n C51 H52 ROC sing 351 n n C61 C71 ROC sing 352 n n C61 H61 ROC sing 353 n n C61 H62 ROC sing 354 n n C71 C7A ROC sing 355 n n C71 H71 ROC sing 356 n n C71 H72 ROC sing 357 n n C7A C81 ROC sing 358 n n C7A H7A ROC sing 359 n n C81 H81 ROC sing 360 n n C81 H82 ROC sing 361 n n N3 CD ROC sing 362 n n N3 HN1 ROC sing 363 n n CD C11 ROC sing 364 n n CD C22 ROC sing 365 n n CD C32 ROC sing 366 n n C11 H11 ROC sing 367 n n C11 H12 ROC sing 368 n n C11 H13 ROC sing 369 n n C22 H21 ROC sing 370 n n C22 H22 ROC sing 371 n n C22 H23 ROC sing 372 n n C32 H311 ROC sing 373 n n C32 H321 ROC sing 374 n n C32 H33 ROC sing 375 n n C N ROC sing 376 n n C1 N2 ROC sing 377 n n C9 CM ROC sing 378 n n CC N3 ROC sing 379 n n # _atom_sites.entry_id 3N3I _atom_sites.fract_transf_matrix[1][1] 0.016023 _atom_sites.fract_transf_matrix[1][2] 0.009251 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018502 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ROC A 1 201 201 ROC ROC . C 3 HOH A 1 1100 1 HOH WAT . C 3 HOH A 2 1101 2 HOH WAT . C 3 HOH A 3 1102 3 HOH WAT . C 3 HOH A 4 1103 4 HOH WAT . C 3 HOH A 5 1104 5 HOH WAT . C 3 HOH A 6 1105 6 HOH WAT . C 3 HOH A 7 1106 7 HOH WAT . C 3 HOH A 8 1107 8 HOH WAT . C 3 HOH A 9 1108 9 HOH WAT . C 3 HOH A 10 1109 10 HOH WAT . C 3 HOH A 11 1110 11 HOH WAT . C 3 HOH A 12 1111 12 HOH WAT . C 3 HOH A 13 1112 13 HOH WAT . C 3 HOH A 14 1113 14 HOH WAT . C 3 HOH A 15 1114 15 HOH WAT . C 3 HOH A 16 1115 16 HOH WAT . C 3 HOH A 17 1116 17 HOH WAT . C 3 HOH A 18 1117 18 HOH WAT . C 3 HOH A 19 1118 19 HOH WAT . C 3 HOH A 20 1119 20 HOH WAT . C 3 HOH A 21 1120 21 HOH WAT . C 3 HOH A 22 1121 22 HOH WAT . C 3 HOH A 23 1122 23 HOH WAT . C 3 HOH A 24 1123 24 HOH WAT . C 3 HOH A 25 1124 25 HOH WAT . C 3 HOH A 26 1125 26 HOH WAT . C 3 HOH A 27 1126 27 HOH WAT . C 3 HOH A 28 1127 28 HOH WAT . C 3 HOH A 29 1128 29 HOH WAT . C 3 HOH A 30 1129 30 HOH WAT . C 3 HOH A 31 1130 31 HOH WAT . C 3 HOH A 32 1131 32 HOH WAT . C 3 HOH A 33 1132 33 HOH WAT . C 3 HOH A 34 1133 34 HOH WAT . C 3 HOH A 35 1134 35 HOH WAT . C 3 HOH A 36 1135 36 HOH WAT . C 3 HOH A 37 1136 37 HOH WAT . C 3 HOH A 38 1137 1 HOH WAT . C 3 HOH A 39 1138 2 HOH WAT . C 3 HOH A 40 1139 3 HOH WAT . C 3 HOH A 41 1140 6 HOH WAT . C 3 HOH A 42 1141 7 HOH WAT . C 3 HOH A 43 1142 9 HOH WAT . C 3 HOH A 44 1143 10 HOH WAT . C 3 HOH A 45 1144 11 HOH WAT . C 3 HOH A 46 1145 12 HOH WAT . C 3 HOH A 47 1146 19 HOH WAT . C 3 HOH A 48 1147 20 HOH WAT . C 3 HOH A 49 1148 21 HOH WAT . C 3 HOH A 50 1149 22 HOH WAT . C 3 HOH A 51 1150 24 HOH WAT . C 3 HOH A 52 1151 25 HOH WAT . C 3 HOH A 53 1152 26 HOH WAT . C 3 HOH A 54 1153 27 HOH WAT . C 3 HOH A 55 1154 28 HOH WAT . C 3 HOH A 56 1155 30 HOH WAT . C 3 HOH A 57 1156 40 HOH WAT . C 3 HOH A 58 1157 42 HOH WAT . C 3 HOH A 59 1158 47 HOH WAT . C 3 HOH A 60 1159 48 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ROC . . . B 2 -6.032 17.953 22.547 1 36.51 ? C ROC 201 A 1 HETATM 2 O O ROC . . . B 2 -6.751 18.821 22.077 1 33.09 ? O ROC 201 A 1 HETATM 3 N N1 ROC . . . B 2 -3.746 17.068 22.897 1 43.18 ? N1 ROC 201 A 1 HETATM 4 C C2 ROC . . . B 2 -4.538 18.111 22.543 1 40.64 ? C2 ROC 201 A 1 HETATM 5 C C3 ROC . . . B 2 -3.968 19.345 22.235 1 42.1 ? C3 ROC 201 A 1 HETATM 6 C C4 ROC . . . B 2 -2.583 19.498 22.254 1 37.79 ? C4 ROC 201 A 1 HETATM 7 C C5 ROC . . . B 2 -0.396 18.545 22.632 1 41.17 ? C5 ROC 201 A 1 HETATM 8 C C6 ROC . . . B 2 0.395 17.456 22.982 1 39.31 ? C6 ROC 201 A 1 HETATM 9 C C7 ROC . . . B 2 -0.205 16.24 23.299 1 46.9 ? C7 ROC 201 A 1 HETATM 10 C C8 ROC . . . B 2 -1.593 16.104 23.27 1 46.61 ? C8 ROC 201 A 1 HETATM 11 C C4A ROC . . . B 2 -1.786 18.412 22.6 1 45.98 ? C4A ROC 201 A 1 HETATM 12 C C8A ROC . . . B 2 -2.392 17.194 22.922 1 47.66 ? C8A ROC 201 A 1 HETATM 13 N N ROC . . . B 2 -6.52 16.854 23.111 1 34.86 ? N ROC 201 A 1 HETATM 14 C CA ROC . . . B 2 -7.945 16.583 23.254 1 35.6 ? CA ROC 201 A 1 HETATM 15 C C1 ROC . . . B 2 -8.203 16.12 24.667 1 42.15 ? C1 ROC 201 A 1 HETATM 16 O O1 ROC . . . B 2 -8.178 14.926 24.927 1 46.98 ? O1 ROC 201 A 1 HETATM 17 C CB ROC . . . B 2 -8.323 15.533 22.217 1 41.45 ? CB ROC 201 A 1 HETATM 18 C CG ROC . . . B 2 -8.456 16.268 20.901 1 43.51 ? CG ROC 201 A 1 HETATM 19 O OD1 ROC . . . B 2 -8.202 15.724 19.835 1 48.47 ? OD1 ROC 201 A 1 HETATM 20 N ND2 ROC . . . B 2 -8.85 17.537 20.983 1 40.51 ? ND2 ROC 201 A 1 HETATM 21 C C9 ROC . . . B 2 -10.109 17.163 27.382 1 36.35 ? C9 ROC 201 A 1 HETATM 22 O O2 ROC . . . B 2 -10.282 18.582 27.377 1 36.39 ? O2 ROC 201 A 1 HETATM 23 C CA1 ROC . . . B 2 -8.672 16.811 27.006 1 36.94 ? CA1 ROC 201 A 1 HETATM 24 N N2 ROC . . . B 2 -8.438 17.079 25.582 1 36.88 ? N2 ROC 201 A 1 HETATM 25 C CB1 ROC . . . B 2 -7.74 17.779 27.724 1 32.86 ? CB1 ROC 201 A 1 HETATM 26 C CG1 ROC . . . B 2 -6.311 17.605 27.261 1 38.07 ? CG1 ROC 201 A 1 HETATM 27 C CD1 ROC . . . B 2 -5.623 16.431 27.538 1 42.34 ? CD1 ROC 201 A 1 HETATM 28 C CD2 ROC . . . B 2 -5.679 18.627 26.566 1 35.85 ? CD2 ROC 201 A 1 HETATM 29 C CE1 ROC . . . B 2 -4.306 16.273 27.125 1 43.06 ? CE1 ROC 201 A 1 HETATM 30 C CE2 ROC . . . B 2 -4.365 18.471 26.152 1 38.45 ? CE2 ROC 201 A 1 HETATM 31 C CZ ROC . . . B 2 -3.679 17.295 26.431 1 41.59 ? CZ ROC 201 A 1 HETATM 32 N N11 ROC . . . B 2 -10.902 15.296 28.722 1 43.71 ? N11 ROC 201 A 1 HETATM 33 C CM ROC . . . B 2 -10.439 16.681 28.788 1 31.75 ? CM ROC 201 A 1 HETATM 34 C C21 ROC . . . B 2 -11.079 14.739 30.075 1 45.2 ? C21 ROC 201 A 1 HETATM 35 C CC ROC . . . B 2 -9.863 14.861 30.94 1 39.1 ? CC ROC 201 A 1 HETATM 36 O O3 ROC . . . B 2 -8.744 14.79 30.465 1 39.21 ? O3 ROC 201 A 1 HETATM 37 C C31 ROC . . . B 2 -11.441 13.262 29.96 1 44.53 ? C31 ROC 201 A 1 HETATM 38 C C3A ROC . . . B 2 -12.809 13.179 29.306 1 41.97 ? C3A ROC 201 A 1 HETATM 39 C C41 ROC . . . B 2 -13.273 11.727 29.221 1 45.86 ? C41 ROC 201 A 1 HETATM 40 C C51 ROC . . . B 2 -12.5 10.937 28.174 1 44.79 ? C51 ROC 201 A 1 HETATM 41 C C61 ROC . . . B 2 -12.587 11.632 26.826 1 43.39 ? C61 ROC 201 A 1 HETATM 42 C C71 ROC . . . B 2 -11.974 13.022 26.94 1 46.28 ? C71 ROC 201 A 1 HETATM 43 C C7A ROC . . . B 2 -12.766 13.857 27.94 1 41.57 ? C7A ROC 201 A 1 HETATM 44 C C81 ROC . . . B 2 -12.197 15.275 28.02 1 35.35 ? C81 ROC 201 A 1 HETATM 45 N N3 ROC . . . B 2 -10.137 15.028 32.235 1 40.09 ? N3 ROC 201 A 1 HETATM 46 C CD ROC . . . B 2 -9.118 15.165 33.259 1 48.05 ? CD ROC 201 A 1 HETATM 47 C C11 ROC . . . B 2 -8.218 13.933 33.237 1 46.51 ? C11 ROC 201 A 1 HETATM 48 C C22 ROC . . . B 2 -9.765 15.287 34.639 1 38.63 ? C22 ROC 201 A 1 HETATM 49 C C32 ROC . . . B 2 -8.264 16.391 32.971 1 36.98 ? C32 ROC 201 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 49 #