data_3N3Z # _model_server_result.job_id U-e6nLj6igUZlDc9BobOhQ _model_server_result.datetime_utc '2024-11-27 06:44:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n3z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1}' # _entry.id 3N3Z # _exptl.entry_id 3N3Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3N3Z _cell.length_a 104.09 _cell.length_b 104.09 _cell.length_c 270.21 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N3Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 J O HOH . A HOH 89 1_555 E MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc2 J O HOH . A HOH 90 1_555 E MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc3 J O HOH . A HOH 91 1_555 E MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc4 J O HOH . A HOH 92 1_555 E MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc5 J O HOH . A HOH 93 1_555 E MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc6 A NE2 HIS 112 A HIS 292 1_555 D ZN ZN . A ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc7 A OD2 ASP 113 A ASP 293 1_555 D ZN ZN . A ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc8 A OD1 ASP 113 A ASP 293 1_555 E MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc9 A OD1 ASP 222 A ASP 402 1_555 D ZN ZN . A ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc10 G MG MG . B MG 1 1_555 K O HOH . B HOH 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc11 G MG MG . B MG 1 1_555 K O HOH . B HOH 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc12 G MG MG . B MG 1 1_555 K O HOH . B HOH 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc13 G MG MG . B MG 1 1_555 K O HOH . B HOH 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc14 G MG MG . B MG 1 1_555 K O HOH . B HOH 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc15 G MG MG . B MG 1 1_555 B OD1 ASP 113 B ASP 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc16 F ZN ZN . B ZN 2 1_555 K O HOH . B HOH 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc17 F ZN ZN . B ZN 2 1_555 B NE2 HIS 112 B HIS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc18 F ZN ZN . B ZN 2 1_555 B OD2 ASP 113 B ASP 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc19 F ZN ZN . B ZN 2 1_555 B OD1 ASP 222 B ASP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3N3Z _atom_sites.fract_transf_matrix[1][1] 0.009607 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003701 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IBM A 1 1 1 IBM IBM . D 3 ZN A 1 507 1 ZN ZN . E 4 MG A 1 508 1 MG MG . F 3 ZN B 1 2 2 ZN ZN . G 4 MG B 1 1 1 MG MG . H 2 IBM B 1 507 1 IBM IBM . I 5 CL B 1 508 1 CL CL . J 6 HOH A 1 2 2 HOH HOH . J 6 HOH A 2 3 3 HOH HOH . J 6 HOH A 3 4 4 HOH HOH . J 6 HOH A 4 5 5 HOH HOH . J 6 HOH A 5 6 6 HOH HOH . J 6 HOH A 6 7 7 HOH HOH . J 6 HOH A 7 8 8 HOH HOH . J 6 HOH A 8 9 9 HOH HOH . J 6 HOH A 9 10 10 HOH HOH . J 6 HOH A 10 12 12 HOH HOH . J 6 HOH A 11 13 13 HOH HOH . J 6 HOH A 12 16 16 HOH HOH . J 6 HOH A 13 17 17 HOH HOH . J 6 HOH A 14 18 18 HOH HOH . J 6 HOH A 15 19 19 HOH HOH . J 6 HOH A 16 20 20 HOH HOH . J 6 HOH A 17 22 22 HOH HOH . J 6 HOH A 18 24 24 HOH HOH . J 6 HOH A 19 25 25 HOH HOH . J 6 HOH A 20 28 28 HOH HOH . J 6 HOH A 21 29 29 HOH HOH . J 6 HOH A 22 30 30 HOH HOH . J 6 HOH A 23 31 31 HOH HOH . J 6 HOH A 24 35 35 HOH HOH . J 6 HOH A 25 36 36 HOH HOH . J 6 HOH A 26 37 37 HOH HOH . J 6 HOH A 27 44 44 HOH HOH . J 6 HOH A 28 46 46 HOH HOH . J 6 HOH A 29 47 47 HOH HOH . J 6 HOH A 30 54 54 HOH HOH . J 6 HOH A 31 55 55 HOH HOH . J 6 HOH A 32 57 57 HOH HOH . J 6 HOH A 33 58 58 HOH HOH . J 6 HOH A 34 65 65 HOH HOH . J 6 HOH A 35 71 71 HOH HOH . J 6 HOH A 36 72 72 HOH HOH . J 6 HOH A 37 73 73 HOH HOH . J 6 HOH A 38 74 74 HOH HOH . J 6 HOH A 39 75 75 HOH HOH . J 6 HOH A 40 81 81 HOH HOH . J 6 HOH A 41 83 83 HOH HOH . J 6 HOH A 42 84 84 HOH HOH . J 6 HOH A 43 85 85 HOH HOH . J 6 HOH A 44 87 87 HOH HOH . J 6 HOH A 45 88 88 HOH HOH . J 6 HOH A 46 89 89 HOH HOH . J 6 HOH A 47 90 90 HOH HOH . J 6 HOH A 48 91 91 HOH HOH . J 6 HOH A 49 92 92 HOH HOH . J 6 HOH A 50 93 93 HOH HOH . J 6 HOH A 51 98 98 HOH HOH . J 6 HOH A 52 99 99 HOH HOH . J 6 HOH A 53 101 101 HOH HOH . J 6 HOH A 54 102 102 HOH HOH . J 6 HOH A 55 103 103 HOH HOH . J 6 HOH A 56 104 104 HOH HOH . K 6 HOH B 1 11 11 HOH HOH . K 6 HOH B 2 14 14 HOH HOH . K 6 HOH B 3 15 15 HOH HOH . K 6 HOH B 4 21 21 HOH HOH . K 6 HOH B 5 23 23 HOH HOH . K 6 HOH B 6 26 26 HOH HOH . K 6 HOH B 7 27 27 HOH HOH . K 6 HOH B 8 32 32 HOH HOH . K 6 HOH B 9 33 33 HOH HOH . K 6 HOH B 10 34 34 HOH HOH . K 6 HOH B 11 38 38 HOH HOH . K 6 HOH B 12 39 39 HOH HOH . K 6 HOH B 13 40 40 HOH HOH . K 6 HOH B 14 41 41 HOH HOH . K 6 HOH B 15 42 42 HOH HOH . K 6 HOH B 16 43 43 HOH HOH . K 6 HOH B 17 45 45 HOH HOH . K 6 HOH B 18 48 48 HOH HOH . K 6 HOH B 19 49 49 HOH HOH . K 6 HOH B 20 50 50 HOH HOH . K 6 HOH B 21 51 51 HOH HOH . K 6 HOH B 22 52 52 HOH HOH . K 6 HOH B 23 53 53 HOH HOH . K 6 HOH B 24 56 56 HOH HOH . K 6 HOH B 25 59 59 HOH HOH . K 6 HOH B 26 60 60 HOH HOH . K 6 HOH B 27 61 61 HOH HOH . K 6 HOH B 28 62 62 HOH HOH . K 6 HOH B 29 63 63 HOH HOH . K 6 HOH B 30 64 64 HOH HOH . K 6 HOH B 31 66 66 HOH HOH . K 6 HOH B 32 67 67 HOH HOH . K 6 HOH B 33 68 68 HOH HOH . K 6 HOH B 34 69 69 HOH HOH . K 6 HOH B 35 70 70 HOH HOH . K 6 HOH B 36 76 76 HOH HOH . K 6 HOH B 37 77 77 HOH HOH . K 6 HOH B 38 78 78 HOH HOH . K 6 HOH B 39 79 79 HOH HOH . K 6 HOH B 40 80 80 HOH HOH . K 6 HOH B 41 82 82 HOH HOH . K 6 HOH B 42 86 86 HOH HOH . K 6 HOH B 43 94 94 HOH HOH . K 6 HOH B 44 95 95 HOH HOH . K 6 HOH B 45 96 96 HOH HOH . K 6 HOH B 46 97 97 HOH HOH . K 6 HOH B 47 100 100 HOH HOH . K 6 HOH B 48 509 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 4 _atom_site.Cartn_x 124.022 _atom_site.Cartn_y 43.766 _atom_site.Cartn_z 81.061 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.91 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #