data_3N3Z
#
_model_server_result.job_id            UkntI_ORPacJYAYJubr8cQ 
_model_server_result.datetime_utc      '2024-11-13 10:59:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3n3z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":507}' 
#
_entry.id    3N3Z 
#
_exptl.entry_id    3N3Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              222.244 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-ISOBUTYL-1-METHYLXANTHINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3N3Z 
_cell.length_a            104.09 
_cell.length_b            104.09 
_cell.length_c            270.21 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3N3Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 J O HOH . A HOH 89 1_555 E MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc2 J O HOH . A HOH 90 1_555 E MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc3 J O HOH . A HOH 91 1_555 E MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
metalc ? metalc4 J O HOH . A HOH 92 1_555 E MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc5 J O HOH . A HOH 93 1_555 E MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc6 A NE2 HIS 112 A HIS 292 1_555 D ZN ZN . A ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc7 A OD2 ASP 113 A ASP 293 1_555 D ZN ZN . A ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc8 A OD1 ASP 113 A ASP 293 1_555 E MG MG . A MG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc9 A OD1 ASP 222 A ASP 402 1_555 D ZN ZN . A ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
metalc ? metalc10 G MG MG . B MG 1 1_555 K O HOH . B HOH 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc11 G MG MG . B MG 1 1_555 K O HOH . B HOH 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc12 G MG MG . B MG 1 1_555 K O HOH . B HOH 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc13 G MG MG . B MG 1 1_555 K O HOH . B HOH 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc14 G MG MG . B MG 1 1_555 K O HOH . B HOH 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc15 G MG MG . B MG 1 1_555 B OD1 ASP 113 B ASP 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
metalc ? metalc16 F ZN ZN . B ZN 2 1_555 K O HOH . B HOH 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc17 F ZN ZN . B ZN 2 1_555 B NE2 HIS 112 B HIS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? 
metalc ? metalc18 F ZN ZN . B ZN 2 1_555 B OD2 ASP 113 B ASP 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc19 F ZN ZN . B ZN 2 1_555 B OD1 ASP 222 B ASP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
#
_chem_comp.formula           'C10 H14 N4 O2' 
_chem_comp.formula_weight    222.244 
_chem_comp.id                IBM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-ISOBUTYL-1-METHYLXANTHINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N9 C8 IBM sing 152 n y 
N9 C4 IBM sing 153 n y 
N9 HN9 IBM sing 154 n n 
C8 N7 IBM doub 155 n y 
C8 H8 IBM sing 156 n n 
N7 C5 IBM sing 157 n y 
C5 C4 IBM doub 158 n y 
C5 C6 IBM sing 159 n y 
C4 N3 IBM sing 160 n y 
N3 C2 IBM sing 161 n y 
N3 C11 IBM sing 162 n n 
C2 N1 IBM sing 163 n y 
C2 O2 IBM doub 164 n n 
N1 C6 IBM sing 165 n y 
N1 C10 IBM sing 166 n n 
C6 O6 IBM doub 167 n n 
C10 H101 IBM sing 168 n n 
C10 H102 IBM sing 169 n n 
C10 H103 IBM sing 170 n n 
C11 C12 IBM sing 171 n n 
C11 H111 IBM sing 172 n n 
C11 H112 IBM sing 173 n n 
C12 C13 IBM sing 174 n n 
C12 C14 IBM sing 175 n n 
C12 H12 IBM sing 176 n n 
C13 H131 IBM sing 177 n n 
C13 H132 IBM sing 178 n n 
C13 H133 IBM sing 179 n n 
C14 H141 IBM sing 180 n n 
C14 H142 IBM sing 181 n n 
C14 H143 IBM sing 182 n n 
#
_atom_sites.entry_id                     3N3Z 
_atom_sites.fract_transf_matrix[1][1]    0.009607 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009607 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003701 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 IBM A 1 1 1 IBM IBM . 
D 3 ZN A 1 507 1 ZN ZN . 
E 4 MG A 1 508 1 MG MG . 
F 3 ZN B 1 2 2 ZN ZN . 
G 4 MG B 1 1 1 MG MG . 
H 2 IBM B 1 507 1 IBM IBM . 
I 5 CL B 1 508 1 CL CL . 
J 6 HOH A 1 2 2 HOH HOH . 
J 6 HOH A 2 3 3 HOH HOH . 
J 6 HOH A 3 4 4 HOH HOH . 
J 6 HOH A 4 5 5 HOH HOH . 
J 6 HOH A 5 6 6 HOH HOH . 
J 6 HOH A 6 7 7 HOH HOH . 
J 6 HOH A 7 8 8 HOH HOH . 
J 6 HOH A 8 9 9 HOH HOH . 
J 6 HOH A 9 10 10 HOH HOH . 
J 6 HOH A 10 12 12 HOH HOH . 
J 6 HOH A 11 13 13 HOH HOH . 
J 6 HOH A 12 16 16 HOH HOH . 
J 6 HOH A 13 17 17 HOH HOH . 
J 6 HOH A 14 18 18 HOH HOH . 
J 6 HOH A 15 19 19 HOH HOH . 
J 6 HOH A 16 20 20 HOH HOH . 
J 6 HOH A 17 22 22 HOH HOH . 
J 6 HOH A 18 24 24 HOH HOH . 
J 6 HOH A 19 25 25 HOH HOH . 
J 6 HOH A 20 28 28 HOH HOH . 
J 6 HOH A 21 29 29 HOH HOH . 
J 6 HOH A 22 30 30 HOH HOH . 
J 6 HOH A 23 31 31 HOH HOH . 
J 6 HOH A 24 35 35 HOH HOH . 
J 6 HOH A 25 36 36 HOH HOH . 
J 6 HOH A 26 37 37 HOH HOH . 
J 6 HOH A 27 44 44 HOH HOH . 
J 6 HOH A 28 46 46 HOH HOH . 
J 6 HOH A 29 47 47 HOH HOH . 
J 6 HOH A 30 54 54 HOH HOH . 
J 6 HOH A 31 55 55 HOH HOH . 
J 6 HOH A 32 57 57 HOH HOH . 
J 6 HOH A 33 58 58 HOH HOH . 
J 6 HOH A 34 65 65 HOH HOH . 
J 6 HOH A 35 71 71 HOH HOH . 
J 6 HOH A 36 72 72 HOH HOH . 
J 6 HOH A 37 73 73 HOH HOH . 
J 6 HOH A 38 74 74 HOH HOH . 
J 6 HOH A 39 75 75 HOH HOH . 
J 6 HOH A 40 81 81 HOH HOH . 
J 6 HOH A 41 83 83 HOH HOH . 
J 6 HOH A 42 84 84 HOH HOH . 
J 6 HOH A 43 85 85 HOH HOH . 
J 6 HOH A 44 87 87 HOH HOH . 
J 6 HOH A 45 88 88 HOH HOH . 
J 6 HOH A 46 89 89 HOH HOH . 
J 6 HOH A 47 90 90 HOH HOH . 
J 6 HOH A 48 91 91 HOH HOH . 
J 6 HOH A 49 92 92 HOH HOH . 
J 6 HOH A 50 93 93 HOH HOH . 
J 6 HOH A 51 98 98 HOH HOH . 
J 6 HOH A 52 99 99 HOH HOH . 
J 6 HOH A 53 101 101 HOH HOH . 
J 6 HOH A 54 102 102 HOH HOH . 
J 6 HOH A 55 103 103 HOH HOH . 
J 6 HOH A 56 104 104 HOH HOH . 
K 6 HOH B 1 11 11 HOH HOH . 
K 6 HOH B 2 14 14 HOH HOH . 
K 6 HOH B 3 15 15 HOH HOH . 
K 6 HOH B 4 21 21 HOH HOH . 
K 6 HOH B 5 23 23 HOH HOH . 
K 6 HOH B 6 26 26 HOH HOH . 
K 6 HOH B 7 27 27 HOH HOH . 
K 6 HOH B 8 32 32 HOH HOH . 
K 6 HOH B 9 33 33 HOH HOH . 
K 6 HOH B 10 34 34 HOH HOH . 
K 6 HOH B 11 38 38 HOH HOH . 
K 6 HOH B 12 39 39 HOH HOH . 
K 6 HOH B 13 40 40 HOH HOH . 
K 6 HOH B 14 41 41 HOH HOH . 
K 6 HOH B 15 42 42 HOH HOH . 
K 6 HOH B 16 43 43 HOH HOH . 
K 6 HOH B 17 45 45 HOH HOH . 
K 6 HOH B 18 48 48 HOH HOH . 
K 6 HOH B 19 49 49 HOH HOH . 
K 6 HOH B 20 50 50 HOH HOH . 
K 6 HOH B 21 51 51 HOH HOH . 
K 6 HOH B 22 52 52 HOH HOH . 
K 6 HOH B 23 53 53 HOH HOH . 
K 6 HOH B 24 56 56 HOH HOH . 
K 6 HOH B 25 59 59 HOH HOH . 
K 6 HOH B 26 60 60 HOH HOH . 
K 6 HOH B 27 61 61 HOH HOH . 
K 6 HOH B 28 62 62 HOH HOH . 
K 6 HOH B 29 63 63 HOH HOH . 
K 6 HOH B 30 64 64 HOH HOH . 
K 6 HOH B 31 66 66 HOH HOH . 
K 6 HOH B 32 67 67 HOH HOH . 
K 6 HOH B 33 68 68 HOH HOH . 
K 6 HOH B 34 69 69 HOH HOH . 
K 6 HOH B 35 70 70 HOH HOH . 
K 6 HOH B 36 76 76 HOH HOH . 
K 6 HOH B 37 77 77 HOH HOH . 
K 6 HOH B 38 78 78 HOH HOH . 
K 6 HOH B 39 79 79 HOH HOH . 
K 6 HOH B 40 80 80 HOH HOH . 
K 6 HOH B 41 82 82 HOH HOH . 
K 6 HOH B 42 86 86 HOH HOH . 
K 6 HOH B 43 94 94 HOH HOH . 
K 6 HOH B 44 95 95 HOH HOH . 
K 6 HOH B 45 96 96 HOH HOH . 
K 6 HOH B 46 97 97 HOH HOH . 
K 6 HOH B 47 100 100 HOH HOH . 
K 6 HOH B 48 509 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N9 IBM . . . H 2 136.441 45.608 79.983 1 57.54 ? N9 IBM 507 B 1 
HETATM 2 C C8 IBM . . . H 2 136.791 45.857 78.698 1 57.59 ? C8 IBM 507 B 1 
HETATM 3 N N7 IBM . . . H 2 135.774 45.521 77.866 1 56.88 ? N7 IBM 507 B 1 
HETATM 4 C C5 IBM . . . H 2 134.772 45.053 78.625 1 58.05 ? C5 IBM 507 B 1 
HETATM 5 C C4 IBM . . . H 2 135.19 45.111 79.937 1 58.67 ? C4 IBM 507 B 1 
HETATM 6 N N3 IBM . . . H 2 134.411 44.716 80.966 1 60.01 ? N3 IBM 507 B 1 
HETATM 7 C C2 IBM . . . H 2 133.166 44.246 80.704 1 59.97 ? C2 IBM 507 B 1 
HETATM 8 N N1 IBM . . . H 2 132.705 44.177 79.365 1 58.87 ? N1 IBM 507 B 1 
HETATM 9 C C6 IBM . . . H 2 133.499 44.578 78.355 1 58.86 ? C6 IBM 507 B 1 
HETATM 10 O O6 IBM . . . H 2 133.081 44.529 77.064 1 59.66 ? O6 IBM 507 B 1 
HETATM 11 O O2 IBM . . . H 2 132.406 43.866 81.634 1 60.86 ? O2 IBM 507 B 1 
HETATM 12 C C10 IBM . . . H 2 131.357 43.673 79.096 1 58.6 ? C10 IBM 507 B 1 
HETATM 13 C C11 IBM . . . H 2 134.896 44.791 82.352 1 59.72 ? C11 IBM 507 B 1 
HETATM 14 C C12 IBM . . . H 2 135.691 43.541 82.677 1 59.79 ? C12 IBM 507 B 1 
HETATM 15 C C13 IBM . . . H 2 135.317 43.037 84.058 1 60.17 ? C13 IBM 507 B 1 
HETATM 16 C C14 IBM . . . H 2 137.184 43.829 82.581 1 60.35 ? C14 IBM 507 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           16 
#