data_3N45 # _model_server_result.job_id GCo5FNUh43g8jw-H6LGfXw _model_server_result.datetime_utc '2024-11-29 16:33:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n45 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3N45 # _exptl.entry_id 3N45 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-1-[(benzyloxy)carbonyl]-2,3-dihydro-1H-indole-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3N45 _cell.length_a 110.753 _cell.length_b 110.753 _cell.length_c 67.966 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N45 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 110.753 110.753 33.983 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E MG MG . F MG 2 1_555 A OD2 ASP 240 F ASP 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc2 E MG MG . F MG 2 1_555 C O12 ZOL . F ZOL 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc3 E MG MG . F MG 2 1_555 C O17 ZOL . F ZOL 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc4 E MG MG . F MG 2 1_555 I O HOH . F HOH 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc5 E MG MG . F MG 2 1_555 I O HOH . F HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc6 E MG MG . F MG 2 1_555 I O HOH . F HOH 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc7 F MG MG . F MG 3 1_555 A OD2 ASP 100 F ASP 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc8 F MG MG . F MG 3 1_555 A OD2 ASP 104 F ASP 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc9 F MG MG . F MG 3 1_555 C O11 ZOL . F ZOL 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc10 F MG MG . F MG 3 1_555 I O HOH . F HOH 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc11 F MG MG . F MG 3 1_555 I O HOH . F HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc12 F MG MG . F MG 3 1_555 I O HOH . F HOH 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc13 A OD1 ASP 100 F ASP 103 1_555 D MG MG . F MG 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc14 A OD2 ASP 104 F ASP 107 1_555 D MG MG . F MG 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc15 C O15 ZOL . F ZOL 354 1_555 D MG MG . F MG 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc16 C O11 ZOL . F ZOL 354 1_555 D MG MG . F MG 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc17 D MG MG . F MG 355 1_555 I O HOH . F HOH 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc18 D MG MG . F MG 355 1_555 I O HOH . F HOH 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? # _chem_comp.formula 'C17 H15 N O4' _chem_comp.formula_weight 297.305 _chem_comp.id 3N3 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-1-[(benzyloxy)carbonyl]-2,3-dihydro-1H-indole-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 3N3 sing 1 n n C21 N1 3N3 sing 2 n n N1 C8 3N3 sing 3 n n C17 C2 3N3 sing 4 n n C2 C4 3N3 sing 5 n n C2 H2 3N3 sing 6 n n C4 C7 3N3 sing 7 n n C4 H4 3N3 sing 8 n n C4 H4A 3N3 sing 9 n n C8 C7 3N3 doub 10 n y C7 C15 3N3 sing 11 n y C8 C9 3N3 sing 12 n y C9 C11 3N3 doub 13 n y C9 H9 3N3 sing 14 n n C11 C13 3N3 sing 15 n y C11 H11 3N3 sing 16 n n C15 C13 3N3 doub 17 n y C13 H13 3N3 sing 18 n n C15 H15 3N3 sing 19 n n O18 C17 3N3 doub 20 n n C17 O19 3N3 sing 21 n n O19 HO19 3N3 sing 22 n n O22 C21 3N3 doub 23 n n C21 O23 3N3 sing 24 n n C24 O23 3N3 sing 25 n n C24 C27 3N3 sing 26 n n C24 H24 3N3 sing 27 n n C24 H24A 3N3 sing 28 n n C28 C27 3N3 doub 29 n y C27 C36 3N3 sing 30 n y C28 C30 3N3 sing 31 n y C28 H28 3N3 sing 32 n n C30 C32 3N3 doub 33 n y C30 H30 3N3 sing 34 n n C32 C34 3N3 sing 35 n y C32 H32 3N3 sing 36 n n C36 C34 3N3 doub 37 n y C34 H34 3N3 sing 38 n n C36 H36 3N3 sing 39 n n # _atom_sites.entry_id 3N45 _atom_sites.fract_transf_matrix[1][1] 0.009029 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014713 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3N3 F 1 1 1 3N3 3N3 . C 3 ZOL F 1 354 1 ZOL ZOL . D 4 MG F 1 355 1 MG MG . E 4 MG F 1 2 2 MG MG . F 4 MG F 1 3 3 MG MG . G 5 PO4 F 1 356 1 PO4 PO4 . H 5 PO4 F 1 357 2 PO4 PO4 . I 6 HOH F 1 358 1 HOH HOH . I 6 HOH F 2 359 2 HOH HOH . I 6 HOH F 3 360 3 HOH HOH . I 6 HOH F 4 361 4 HOH HOH . I 6 HOH F 5 362 5 HOH HOH . I 6 HOH F 6 363 6 HOH HOH . I 6 HOH F 7 364 7 HOH HOH . I 6 HOH F 8 365 8 HOH HOH . I 6 HOH F 9 366 9 HOH HOH . I 6 HOH F 10 367 10 HOH HOH . I 6 HOH F 11 368 11 HOH HOH . I 6 HOH F 12 369 12 HOH HOH . I 6 HOH F 13 370 13 HOH HOH . I 6 HOH F 14 371 14 HOH HOH . I 6 HOH F 15 372 15 HOH HOH . I 6 HOH F 16 373 16 HOH HOH . I 6 HOH F 17 374 17 HOH HOH . I 6 HOH F 18 375 18 HOH HOH . I 6 HOH F 19 376 19 HOH HOH . I 6 HOH F 20 377 20 HOH HOH . I 6 HOH F 21 378 21 HOH HOH . I 6 HOH F 22 379 22 HOH HOH . I 6 HOH F 23 380 23 HOH HOH . I 6 HOH F 24 381 24 HOH HOH . I 6 HOH F 25 382 25 HOH HOH . I 6 HOH F 26 383 26 HOH HOH . I 6 HOH F 27 384 27 HOH HOH . I 6 HOH F 28 385 28 HOH HOH . I 6 HOH F 29 386 29 HOH HOH . I 6 HOH F 30 387 30 HOH HOH . I 6 HOH F 31 388 31 HOH HOH . I 6 HOH F 32 389 32 HOH HOH . I 6 HOH F 33 390 33 HOH HOH . I 6 HOH F 34 391 34 HOH HOH . I 6 HOH F 35 392 35 HOH HOH . I 6 HOH F 36 393 36 HOH HOH . I 6 HOH F 37 394 37 HOH HOH . I 6 HOH F 38 395 38 HOH HOH . I 6 HOH F 39 396 39 HOH HOH . I 6 HOH F 40 397 40 HOH HOH . I 6 HOH F 41 398 41 HOH HOH . I 6 HOH F 42 399 42 HOH HOH . I 6 HOH F 43 400 43 HOH HOH . I 6 HOH F 44 401 44 HOH HOH . I 6 HOH F 45 402 45 HOH HOH . I 6 HOH F 46 403 46 HOH HOH . I 6 HOH F 47 404 47 HOH HOH . I 6 HOH F 48 405 48 HOH HOH . I 6 HOH F 49 406 49 HOH HOH . I 6 HOH F 50 407 50 HOH HOH . I 6 HOH F 51 408 51 HOH HOH . I 6 HOH F 52 409 52 HOH HOH . I 6 HOH F 53 410 53 HOH HOH . I 6 HOH F 54 411 54 HOH HOH . I 6 HOH F 55 412 55 HOH HOH . I 6 HOH F 56 413 56 HOH HOH . I 6 HOH F 57 414 57 HOH HOH . I 6 HOH F 58 415 58 HOH HOH . I 6 HOH F 59 416 59 HOH HOH . I 6 HOH F 60 417 60 HOH HOH . I 6 HOH F 61 418 61 HOH HOH . I 6 HOH F 62 419 62 HOH HOH . I 6 HOH F 63 420 63 HOH HOH . I 6 HOH F 64 421 64 HOH HOH . I 6 HOH F 65 422 65 HOH HOH . I 6 HOH F 66 423 66 HOH HOH . I 6 HOH F 67 424 67 HOH HOH . I 6 HOH F 68 425 68 HOH HOH . I 6 HOH F 69 426 69 HOH HOH . I 6 HOH F 70 427 70 HOH HOH . I 6 HOH F 71 428 71 HOH HOH . I 6 HOH F 72 429 72 HOH HOH . I 6 HOH F 73 430 73 HOH HOH . I 6 HOH F 74 431 74 HOH HOH . I 6 HOH F 75 432 75 HOH HOH . I 6 HOH F 76 433 76 HOH HOH . I 6 HOH F 77 434 77 HOH HOH . I 6 HOH F 78 435 78 HOH HOH . I 6 HOH F 79 436 79 HOH HOH . I 6 HOH F 80 437 80 HOH HOH . I 6 HOH F 81 438 81 HOH HOH . I 6 HOH F 82 439 82 HOH HOH . I 6 HOH F 83 440 83 HOH HOH . I 6 HOH F 84 441 84 HOH HOH . I 6 HOH F 85 442 85 HOH HOH . I 6 HOH F 86 443 86 HOH HOH . I 6 HOH F 87 444 87 HOH HOH . I 6 HOH F 88 445 88 HOH HOH . I 6 HOH F 89 446 89 HOH HOH . I 6 HOH F 90 447 90 HOH HOH . I 6 HOH F 91 448 91 HOH HOH . I 6 HOH F 92 449 92 HOH HOH . I 6 HOH F 93 450 93 HOH HOH . I 6 HOH F 94 451 94 HOH HOH . I 6 HOH F 95 452 95 HOH HOH . I 6 HOH F 96 453 96 HOH HOH . I 6 HOH F 97 454 97 HOH HOH . I 6 HOH F 98 455 98 HOH HOH . I 6 HOH F 99 456 99 HOH HOH . I 6 HOH F 100 457 100 HOH HOH . I 6 HOH F 101 458 101 HOH HOH . I 6 HOH F 102 459 102 HOH HOH . I 6 HOH F 103 460 103 HOH HOH . I 6 HOH F 104 461 104 HOH HOH . I 6 HOH F 105 462 105 HOH HOH . I 6 HOH F 106 463 106 HOH HOH . I 6 HOH F 107 464 107 HOH HOH . I 6 HOH F 108 465 108 HOH HOH . I 6 HOH F 109 466 109 HOH HOH . I 6 HOH F 110 467 110 HOH HOH . I 6 HOH F 111 468 111 HOH HOH . I 6 HOH F 112 469 112 HOH HOH . I 6 HOH F 113 470 113 HOH HOH . I 6 HOH F 114 471 114 HOH HOH . I 6 HOH F 115 472 115 HOH HOH . I 6 HOH F 116 473 116 HOH HOH . I 6 HOH F 117 474 117 HOH HOH . I 6 HOH F 118 475 118 HOH HOH . I 6 HOH F 119 476 119 HOH HOH . I 6 HOH F 120 477 120 HOH HOH . I 6 HOH F 121 478 121 HOH HOH . I 6 HOH F 122 479 122 HOH HOH . I 6 HOH F 123 480 123 HOH HOH . I 6 HOH F 124 481 124 HOH HOH . I 6 HOH F 125 482 125 HOH HOH . I 6 HOH F 126 483 126 HOH HOH . I 6 HOH F 127 484 127 HOH HOH . I 6 HOH F 128 485 128 HOH HOH . I 6 HOH F 129 486 129 HOH HOH . I 6 HOH F 130 487 130 HOH HOH . I 6 HOH F 131 488 131 HOH HOH . I 6 HOH F 132 489 132 HOH HOH . I 6 HOH F 133 490 133 HOH HOH . I 6 HOH F 134 491 134 HOH HOH . I 6 HOH F 135 492 135 HOH HOH . I 6 HOH F 136 493 136 HOH HOH . I 6 HOH F 137 494 137 HOH HOH . I 6 HOH F 138 495 138 HOH HOH . I 6 HOH F 139 496 139 HOH HOH . I 6 HOH F 140 497 140 HOH HOH . I 6 HOH F 141 498 141 HOH HOH . I 6 HOH F 142 499 142 HOH HOH . I 6 HOH F 143 500 143 HOH HOH . I 6 HOH F 144 501 144 HOH HOH . I 6 HOH F 145 502 145 HOH HOH . I 6 HOH F 146 503 146 HOH HOH . I 6 HOH F 147 504 147 HOH HOH . I 6 HOH F 148 505 148 HOH HOH . I 6 HOH F 149 506 149 HOH HOH . I 6 HOH F 150 507 150 HOH HOH . I 6 HOH F 151 508 151 HOH HOH . I 6 HOH F 152 509 152 HOH HOH . I 6 HOH F 153 510 153 HOH HOH . I 6 HOH F 154 511 154 HOH HOH . I 6 HOH F 155 512 155 HOH HOH . I 6 HOH F 156 513 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 3N3 . . . B 2 4.546 73.296 23.511 1 70.89 ? N1 3N3 1 F 1 HETATM 2 C C2 3N3 . . . B 2 5.747 73.019 22.698 1 73.26 ? C2 3N3 1 F 1 HETATM 3 C C4 3N3 . . . B 2 6.598 72.037 23.642 1 73.41 ? C4 3N3 1 F 1 HETATM 4 C C7 3N3 . . . B 2 5.634 71.701 24.787 1 73 ? C7 3N3 1 F 1 HETATM 5 C C8 3N3 . . . B 2 4.512 72.46 24.638 1 72.18 ? C8 3N3 1 F 1 HETATM 6 C C9 3N3 . . . B 2 3.44 72.384 25.55 1 71.34 ? C9 3N3 1 F 1 HETATM 7 C C11 3N3 . . . B 2 3.573 71.469 26.616 1 69.25 ? C11 3N3 1 F 1 HETATM 8 C C13 3N3 . . . B 2 4.736 70.677 26.756 1 71.83 ? C13 3N3 1 F 1 HETATM 9 C C15 3N3 . . . B 2 5.799 70.793 25.84 1 71.46 ? C15 3N3 1 F 1 HETATM 10 C C17 3N3 . . . B 2 5.313 72.128 21.563 1 75.6 ? C17 3N3 1 F 1 HETATM 11 O O18 3N3 . . . B 2 5.732 72.287 20.432 1 78.89 ? O18 3N3 1 F 1 HETATM 12 O O19 3N3 . . . B 2 4.445 71.159 21.867 1 73.89 ? O19 3N3 1 F 1 HETATM 13 C C21 3N3 . . . B 2 3.626 74.252 23.156 1 71.07 ? C21 3N3 1 F 1 HETATM 14 O O22 3N3 . . . B 2 3.716 74.93 22.132 1 74.08 ? O22 3N3 1 F 1 HETATM 15 O O23 3N3 . . . B 2 2.605 74.398 24.031 1 65.99 ? O23 3N3 1 F 1 HETATM 16 C C24 3N3 . . . B 2 1.667 75.468 23.704 1 60.15 ? C24 3N3 1 F 1 HETATM 17 C C27 3N3 . . . B 2 2.199 76.894 23.959 1 55.98 ? C27 3N3 1 F 1 HETATM 18 C C28 3N3 . . . B 2 1.322 77.989 23.811 1 56.19 ? C28 3N3 1 F 1 HETATM 19 C C30 3N3 . . . B 2 1.766 79.297 24.052 1 53.13 ? C30 3N3 1 F 1 HETATM 20 C C32 3N3 . . . B 2 3.1 79.513 24.436 1 53.73 ? C32 3N3 1 F 1 HETATM 21 C C34 3N3 . . . B 2 3.982 78.429 24.574 1 52.47 ? C34 3N3 1 F 1 HETATM 22 C C36 3N3 . . . B 2 3.535 77.119 24.337 1 53.91 ? C36 3N3 1 F 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #