data_3N4L # _model_server_result.job_id 20-E1MyMf-sWd9dEOvB15Q _model_server_result.datetime_utc '2024-11-22 08:52:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n4l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":407}' # _entry.id 3N4L # _exptl.entry_id 3N4L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 482.565 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1S,2R)-1-(3,5-difluorobenzyl)-2-hydroxy-3-({1-[3-(1H-pyrazol-1-yl)phenyl]cyclohexyl}amino)propyl]acetamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.63 _cell.angle_gamma 90 _cell.entry_id 3N4L _cell.length_a 83.047 _cell.length_b 105.582 _cell.length_c 101.575 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N4L _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 161 A CYS 161 1_555 A SG CYS 365 A CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 223 A CYS 223 1_555 A SG CYS 388 A CYS 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 275 A CYS 275 1_555 A SG CYS 325 A CYS 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf4 B SG CYS 161 B CYS 161 1_555 B SG CYS 365 B CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf5 B SG CYS 223 B CYS 223 1_555 B SG CYS 388 B CYS 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf6 B SG CYS 275 B CYS 275 1_555 B SG CYS 325 B CYS 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf7 C SG CYS 161 C CYS 161 1_555 C SG CYS 365 C CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf8 C SG CYS 223 C CYS 223 1_555 C SG CYS 388 C CYS 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf9 C SG CYS 275 C CYS 275 1_555 C SG CYS 325 C CYS 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C27 H32 F2 N4 O2' _chem_comp.formula_weight 482.565 _chem_comp.id 842 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1S,2R)-1-(3,5-difluorobenzyl)-2-hydroxy-3-({1-[3-(1H-pyrazol-1-yl)phenyl]cyclohexyl}amino)propyl]acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 842 sing 1 n n C1 H1 842 sing 2 n n C1 H1A 842 sing 3 n n C1 H1B 842 sing 4 n n O25 C2 842 doub 5 n n C2 N3 842 sing 6 n n C4 N3 842 sing 7 n n N3 HN3 842 sing 8 n n C5 C4 842 sing 9 n n C4 C26 842 sing 10 n n C4 H4 842 sing 11 n n O35 C5 842 sing 12 n n C6 C5 842 sing 13 n n C5 H5 842 sing 14 n n N7 C6 842 sing 15 n n C6 H6 842 sing 16 n n C6 H6A 842 sing 17 n n C8 N7 842 sing 18 n n N7 HN7 842 sing 19 n n C14 C8 842 sing 20 n n C9 C8 842 sing 21 n n C8 C13 842 sing 22 n n C10 C9 842 sing 23 n n C9 H9 842 sing 24 n n C9 H9A 842 sing 25 n n C10 C11 842 sing 26 n n C10 H10 842 sing 27 n n C10 H10A 842 sing 28 n n C11 C12 842 sing 29 n n C11 H11 842 sing 30 n n C11 H11A 842 sing 31 n n C12 C13 842 sing 32 n n C12 H12 842 sing 33 n n C12 H12A 842 sing 34 n n C13 H13 842 sing 35 n n C13 H13A 842 sing 36 n n C15 C14 842 doub 37 n y C19 C14 842 sing 38 n y C16 C15 842 sing 39 n y C15 H15 842 sing 40 n n N20 C16 842 sing 41 n y C17 C16 842 doub 42 n y C17 C18 842 sing 43 n y C17 H17 842 sing 44 n n C18 C19 842 doub 45 n y C18 H18 842 sing 46 n n C19 H19 842 sing 47 n n N21 N20 842 sing 48 n y C24 N20 842 sing 49 n y C22 N21 842 doub 50 n y C22 C23 842 sing 51 n y C22 H22 842 sing 52 n n C23 C24 842 doub 53 n y C23 H23 842 sing 54 n n C24 H24 842 sing 55 n n C26 C27 842 sing 56 n n C26 H26 842 sing 57 n n C26 H26A 842 sing 58 n n C32 C27 842 doub 59 n y C27 C28 842 sing 60 n y C28 C29 842 doub 61 n y C28 H28 842 sing 62 n n C30 C29 842 sing 63 n y C29 F33 842 sing 64 n n C31 C30 842 doub 65 n y C30 H30 842 sing 66 n n F34 C31 842 sing 67 n n C32 C31 842 sing 68 n y C32 H32 842 sing 69 n n O35 HO35 842 sing 70 n n # _atom_sites.entry_id 3N4L _atom_sites.fract_transf_matrix[1][1] 0.012041 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003143 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009471 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010175 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 842 A 1 407 1 842 842 . E 2 842 B 1 407 1 842 842 . F 2 842 C 1 407 1 842 842 . G 3 HOH A 1 408 1 HOH HOH . G 3 HOH A 2 409 2 HOH HOH . G 3 HOH A 3 410 9 HOH HOH . G 3 HOH A 4 411 14 HOH HOH . G 3 HOH A 5 412 15 HOH HOH . G 3 HOH A 6 413 19 HOH HOH . G 3 HOH A 7 414 20 HOH HOH . G 3 HOH A 8 415 28 HOH HOH . G 3 HOH A 9 416 29 HOH HOH . G 3 HOH A 10 417 30 HOH HOH . G 3 HOH A 11 418 31 HOH HOH . G 3 HOH A 12 419 32 HOH HOH . H 3 HOH B 1 408 4 HOH HOH . H 3 HOH B 2 409 5 HOH HOH . H 3 HOH B 3 410 7 HOH HOH . H 3 HOH B 4 411 8 HOH HOH . H 3 HOH B 5 412 11 HOH HOH . H 3 HOH B 6 413 12 HOH HOH . H 3 HOH B 7 414 13 HOH HOH . H 3 HOH B 8 415 16 HOH HOH . H 3 HOH B 9 416 17 HOH HOH . H 3 HOH B 10 417 22 HOH HOH . H 3 HOH B 11 418 23 HOH HOH . H 3 HOH B 12 419 33 HOH HOH . H 3 HOH B 13 420 34 HOH HOH . H 3 HOH B 14 421 35 HOH HOH . I 3 HOH C 1 408 3 HOH HOH . I 3 HOH C 2 409 6 HOH HOH . I 3 HOH C 3 410 10 HOH HOH . I 3 HOH C 4 411 18 HOH HOH . I 3 HOH C 5 412 21 HOH HOH . I 3 HOH C 6 413 24 HOH HOH . I 3 HOH C 7 414 25 HOH HOH . I 3 HOH C 8 415 26 HOH HOH . I 3 HOH C 9 416 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 842 . . . F 2 8.506 -39.103 50.377 1 53.04 ? C1 842 407 C 1 HETATM 2 C C2 842 . . . F 2 8.671 -40.565 50.619 1 53.09 ? C2 842 407 C 1 HETATM 3 N N3 842 . . . F 2 8.599 -41.325 49.554 1 52.22 ? N3 842 407 C 1 HETATM 4 C C4 842 . . . F 2 9.127 -42.664 49.477 1 53.55 ? C4 842 407 C 1 HETATM 5 C C5 842 . . . F 2 10.416 -42.619 48.639 1 53.84 ? C5 842 407 C 1 HETATM 6 C C6 842 . . . F 2 11.495 -41.715 49.24 1 51.25 ? C6 842 407 C 1 HETATM 7 N N7 842 . . . F 2 12.821 -41.897 48.629 1 51.51 ? N7 842 407 C 1 HETATM 8 C C8 842 . . . F 2 14.113 -41.65 49.338 1 49 ? C8 842 407 C 1 HETATM 9 C C9 842 . . . F 2 15.314 -42.075 48.493 1 47 ? C9 842 407 C 1 HETATM 10 C C10 842 . . . F 2 16.604 -41.765 49.231 1 44.83 ? C10 842 407 C 1 HETATM 11 C C11 842 . . . F 2 16.684 -40.28 49.534 1 44.77 ? C11 842 407 C 1 HETATM 12 C C12 842 . . . F 2 15.482 -39.753 50.308 1 44.54 ? C12 842 407 C 1 HETATM 13 C C13 842 . . . F 2 14.196 -40.148 49.618 1 46.57 ? C13 842 407 C 1 HETATM 14 C C14 842 . . . F 2 14.107 -42.522 50.601 1 48.6 ? C14 842 407 C 1 HETATM 15 C C15 842 . . . F 2 14.226 -43.921 50.453 1 48.38 ? C15 842 407 C 1 HETATM 16 C C16 842 . . . F 2 14.195 -44.813 51.54 1 47.49 ? C16 842 407 C 1 HETATM 17 C C17 842 . . . F 2 14.007 -44.213 52.806 1 46.79 ? C17 842 407 C 1 HETATM 18 C C18 842 . . . F 2 13.885 -42.841 52.994 1 44.73 ? C18 842 407 C 1 HETATM 19 C C19 842 . . . F 2 13.927 -42.002 51.893 1 46.95 ? C19 842 407 C 1 HETATM 20 N N20 842 . . . F 2 14.259 -46.133 51.347 1 45.62 ? N20 842 407 C 1 HETATM 21 N N21 842 . . . F 2 15.181 -46.778 50.555 1 46.49 ? N21 842 407 C 1 HETATM 22 C C22 842 . . . F 2 14.837 -48.087 50.617 1 45.29 ? C22 842 407 C 1 HETATM 23 C C23 842 . . . F 2 13.699 -48.197 51.397 1 45.23 ? C23 842 407 C 1 HETATM 24 C C24 842 . . . F 2 13.34 -46.94 51.849 1 45.52 ? C24 842 407 C 1 HETATM 25 O O25 842 . . . F 2 8.87 -41.004 51.729 1 56.15 ? O25 842 407 C 1 HETATM 26 C C26 842 . . . F 2 7.968 -43.504 48.909 1 55.44 ? C26 842 407 C 1 HETATM 27 C C27 842 . . . F 2 6.718 -43.163 49.742 1 59.06 ? C27 842 407 C 1 HETATM 28 C C28 842 . . . F 2 6.663 -43.466 51.109 1 61.69 ? C28 842 407 C 1 HETATM 29 C C29 842 . . . F 2 5.549 -43.171 51.918 1 63.46 ? C29 842 407 C 1 HETATM 30 C C30 842 . . . F 2 4.44 -42.551 51.384 1 62.5 ? C30 842 407 C 1 HETATM 31 C C31 842 . . . F 2 4.48 -42.241 50.031 1 63.52 ? C31 842 407 C 1 HETATM 32 C C32 842 . . . F 2 5.593 -42.529 49.213 1 60.84 ? C32 842 407 C 1 HETATM 33 F F33 842 . . . F 2 5.532 -43.469 53.228 1 65.32 ? F33 842 407 C 1 HETATM 34 F F34 842 . . . F 2 3.381 -41.636 49.539 1 66.93 ? F34 842 407 C 1 HETATM 35 O O35 842 . . . F 2 10.951 -43.928 48.421 1 54.25 ? O35 842 407 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 35 #