data_3N4M # _model_server_result.job_id VXri_HNLx8dQ3dKdlYJB7w _model_server_result.datetime_utc '2025-03-06 08:41:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n4m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":210}' # _entry.id 3N4M # _exptl.entry_id 3N4M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3N4M _cell.length_a 175.73 _cell.length_b 175.73 _cell.length_c 160.1 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N4M _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_657 -x+y+1,y,-z+2 -1 0 0 0 1 0 0 0 -1 175.73 0 320.2 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 D N3 DC 1 D DC 1 1_555 E N1 DG 24 E DG 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 D N4 DC 1 D DC 1 1_555 E O6 DG 24 E DG 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 D O2 DC 1 D DC 1 1_555 E N2 DG 24 E DG 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 D N3 DT 2 D DT 2 1_555 E N1 DA 23 E DA 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 D O4 DT 2 D DT 2 1_555 E N6 DA 23 E DA 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 D N3 DT 3 D DT 3 1_555 E N1 DA 22 E DA 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 D O4 DT 3 D DT 3 1_555 E N6 DA 22 E DA 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 D N3 DT 4 D DT 4 1_555 E N1 DA 21 E DA 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 D O4 DT 4 D DT 4 1_555 E N6 DA 21 E DA 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 D N3 DT 5 D DT 5 1_555 E N1 DA 20 E DA 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 D O4 DT 5 D DT 5 1_555 E N6 DA 20 E DA 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 D N3 DT 6 D DT 6 1_555 E N1 DA 19 E DA 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 D O4 DT 6 D DT 6 1_555 E N6 DA 19 E DA 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 D N3 DT 7 D DT 7 1_555 E N1 DA 18 E DA 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 D O4 DT 7 D DT 7 1_555 E N6 DA 18 E DA 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 D N3 DC 8 D DC 8 1_555 E N1 DG 17 E DG 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 D N4 DC 8 D DC 8 1_555 E O6 DG 17 E DG 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 D O2 DC 8 D DC 8 1_555 E N2 DG 17 E DG 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 D N3 DC 9 D DC 9 1_555 E N1 DG 16 E DG 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 D N4 DC 9 D DC 9 1_555 E O6 DG 16 E DG 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 D O2 DC 9 D DC 9 1_555 E N2 DG 16 E DG 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 D N3 DT 10 D DT 10 1_555 E N1 DA 15 E DA 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 D O4 DT 10 D DT 10 1_555 E N6 DA 15 E DA 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 D N1 DA 11 D DA 11 1_555 E N3 DT 14 E DT 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 D N6 DA 11 D DA 11 1_555 E O4 DT 14 E DT 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 D N1 DA 12 D DA 12 1_555 E N3 DT 13 E DT 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 D N6 DA 12 D DA 12 1_555 E O4 DT 13 E DT 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 D N1 DA 13 D DA 13 1_555 E N3 DT 12 E DT 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 D N6 DA 13 D DA 13 1_555 E O4 DT 12 E DT 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 D N1 DA 14 D DA 14 1_555 E N3 DT 11 E DT 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 D N6 DA 14 D DA 14 1_555 E O4 DT 11 E DT 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 D N3 DT 15 D DT 15 1_555 E N1 DA 10 E DA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 D O4 DT 15 D DT 15 1_555 E N6 DA 10 E DA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 D N1 DG 16 D DG 16 1_555 E N3 DC 9 E DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 D N2 DG 16 D DG 16 1_555 E O2 DC 9 E DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 D O6 DG 16 D DG 16 1_555 E N4 DC 9 E DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 D N3 DT 17 D DT 17 1_555 E N1 DA 8 E DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 D O4 DT 17 D DT 17 1_555 E N6 DA 8 E DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 D N1 DG 18 D DG 18 1_555 E N3 DC 7 E DC 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 D N2 DG 18 D DG 18 1_555 E O2 DC 7 E DC 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 D O6 DG 18 D DG 18 1_555 E N4 DC 7 E DC 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 D N1 DA 19 D DA 19 1_555 E N3 DT 6 E DT 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 D N6 DA 19 D DA 19 1_555 E O4 DT 6 E DT 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 D N3 DT 20 D DT 20 1_555 E N1 DA 5 E DA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 D O4 DT 20 D DT 20 1_555 E N6 DA 5 E DA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 3N4M _atom_sites.fract_transf_matrix[1][1] 0.005691 _atom_sites.fract_transf_matrix[1][2] 0.003285 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 CMP A 1 210 210 CMP CMP . G 6 PEG A 1 501 501 PEG PEG . H 6 PEG A 1 502 502 PEG PEG . I 5 CMP D 1 100 100 CMP CMP . J 7 HOH A 1 211 7 HOH HOH . J 7 HOH A 2 212 11 HOH HOH . J 7 HOH A 3 213 13 HOH HOH . J 7 HOH A 4 214 25 HOH HOH . J 7 HOH A 5 215 42 HOH HOH . J 7 HOH A 6 216 44 HOH HOH . J 7 HOH A 7 217 88 HOH HOH . J 7 HOH A 8 218 90 HOH HOH . J 7 HOH A 9 219 91 HOH HOH . J 7 HOH A 10 220 96 HOH HOH . J 7 HOH A 11 221 100 HOH HOH . K 7 HOH D 1 21 21 HOH HOH . K 7 HOH D 2 22 12 HOH HOH . K 7 HOH D 3 23 14 HOH HOH . K 7 HOH D 4 24 20 HOH HOH . K 7 HOH D 5 49 49 HOH HOH . K 7 HOH D 6 57 57 HOH HOH . K 7 HOH D 7 60 60 HOH HOH . K 7 HOH D 8 64 64 HOH HOH . K 7 HOH D 9 68 68 HOH HOH . K 7 HOH D 10 77 77 HOH HOH . K 7 HOH D 11 80 80 HOH HOH . K 7 HOH D 12 81 81 HOH HOH . K 7 HOH D 13 102 102 HOH HOH . L 7 HOH E 1 19 19 HOH HOH . L 7 HOH E 2 45 23 HOH HOH . L 7 HOH E 3 46 46 HOH HOH . L 7 HOH E 4 47 47 HOH HOH . L 7 HOH E 5 48 27 HOH HOH . L 7 HOH E 6 49 31 HOH HOH . L 7 HOH E 7 50 43 HOH HOH . L 7 HOH E 8 69 69 HOH HOH . L 7 HOH E 9 73 73 HOH HOH . L 7 HOH E 10 82 82 HOH HOH . L 7 HOH E 11 101 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . F 5 86.996 -62.87 148.852 1 76.78 ? P CMP 210 A 1 HETATM 2 O O1P CMP . . . F 5 85.744 -62.22 149.4 1 78.75 ? O1P CMP 210 A 1 HETATM 3 O O2P CMP . . . F 5 86.703 -64.218 148.245 1 89.09 ? O2P CMP 210 A 1 HETATM 4 O O5' CMP . . . F 5 87.715 -61.91 147.779 1 80.27 ? O5' CMP 210 A 1 HETATM 5 C C5' CMP . . . F 5 88.389 -60.733 148.213 1 69.13 ? C5' CMP 210 A 1 HETATM 6 C C4' CMP . . . F 5 89.428 -61.192 149.219 1 68.74 ? C4' CMP 210 A 1 HETATM 7 O O4' CMP . . . F 5 90.221 -60.16 149.809 1 66.74 ? O4' CMP 210 A 1 HETATM 8 C C3' CMP . . . F 5 88.758 -61.824 150.414 1 73.77 ? C3' CMP 210 A 1 HETATM 9 O O3' CMP . . . F 5 88.112 -63.02 150.006 1 77.34 ? O3' CMP 210 A 1 HETATM 10 C C2' CMP . . . F 5 89.934 -61.942 151.357 1 70.18 ? C2' CMP 210 A 1 HETATM 11 O O2' CMP . . . F 5 90.774 -63.039 150.995 1 72.59 ? O2' CMP 210 A 1 HETATM 12 C C1' CMP . . . F 5 90.665 -60.631 151.087 1 64.97 ? C1' CMP 210 A 1 HETATM 13 N N9 CMP . . . F 5 90.252 -59.67 152.139 1 65.6 ? N9 CMP 210 A 1 HETATM 14 C C8 CMP . . . F 5 89.061 -59.037 152.219 1 64.78 ? C8 CMP 210 A 1 HETATM 15 N N7 CMP . . . F 5 88.997 -58.24 153.319 1 58.49 ? N7 CMP 210 A 1 HETATM 16 C C5 CMP . . . F 5 90.176 -58.361 153.963 1 57.36 ? C5 CMP 210 A 1 HETATM 17 C C6 CMP . . . F 5 90.78 -57.799 155.192 1 64.58 ? C6 CMP 210 A 1 HETATM 18 N N6 CMP . . . F 5 90.098 -56.923 155.965 1 64.69 ? N6 CMP 210 A 1 HETATM 19 N N1 CMP . . . F 5 92.035 -58.196 155.512 1 67.37 ? N1 CMP 210 A 1 HETATM 20 C C2 CMP . . . F 5 92.725 -59.07 154.747 1 58.68 ? C2 CMP 210 A 1 HETATM 21 N N3 CMP . . . F 5 92.242 -59.622 153.618 1 56.87 ? N3 CMP 210 A 1 HETATM 22 C C4 CMP . . . F 5 90.996 -59.309 153.185 1 58.64 ? C4 CMP 210 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #