data_3N4M # _model_server_result.job_id '_bgJgvtJOyQfzs5uR4GZpQ' _model_server_result.datetime_utc '2025-03-06 08:42:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n4m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":502}' # _entry.id 3N4M # _exptl.entry_id 3N4M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3N4M _cell.length_a 175.73 _cell.length_b 175.73 _cell.length_c 160.1 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N4M _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_657 -x+y+1,y,-z+2 -1 0 0 0 1 0 0 0 -1 175.73 0 320.2 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 D N3 DC 1 D DC 1 1_555 E N1 DG 24 E DG 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 D N4 DC 1 D DC 1 1_555 E O6 DG 24 E DG 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 D O2 DC 1 D DC 1 1_555 E N2 DG 24 E DG 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 D N3 DT 2 D DT 2 1_555 E N1 DA 23 E DA 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 D O4 DT 2 D DT 2 1_555 E N6 DA 23 E DA 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 D N3 DT 3 D DT 3 1_555 E N1 DA 22 E DA 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 D O4 DT 3 D DT 3 1_555 E N6 DA 22 E DA 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 D N3 DT 4 D DT 4 1_555 E N1 DA 21 E DA 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 D O4 DT 4 D DT 4 1_555 E N6 DA 21 E DA 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 D N3 DT 5 D DT 5 1_555 E N1 DA 20 E DA 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 D O4 DT 5 D DT 5 1_555 E N6 DA 20 E DA 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 D N3 DT 6 D DT 6 1_555 E N1 DA 19 E DA 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 D O4 DT 6 D DT 6 1_555 E N6 DA 19 E DA 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 D N3 DT 7 D DT 7 1_555 E N1 DA 18 E DA 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 D O4 DT 7 D DT 7 1_555 E N6 DA 18 E DA 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 D N3 DC 8 D DC 8 1_555 E N1 DG 17 E DG 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 D N4 DC 8 D DC 8 1_555 E O6 DG 17 E DG 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 D O2 DC 8 D DC 8 1_555 E N2 DG 17 E DG 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 D N3 DC 9 D DC 9 1_555 E N1 DG 16 E DG 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 D N4 DC 9 D DC 9 1_555 E O6 DG 16 E DG 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 D O2 DC 9 D DC 9 1_555 E N2 DG 16 E DG 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 D N3 DT 10 D DT 10 1_555 E N1 DA 15 E DA 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 D O4 DT 10 D DT 10 1_555 E N6 DA 15 E DA 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 D N1 DA 11 D DA 11 1_555 E N3 DT 14 E DT 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 D N6 DA 11 D DA 11 1_555 E O4 DT 14 E DT 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 D N1 DA 12 D DA 12 1_555 E N3 DT 13 E DT 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 D N6 DA 12 D DA 12 1_555 E O4 DT 13 E DT 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 D N1 DA 13 D DA 13 1_555 E N3 DT 12 E DT 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 D N6 DA 13 D DA 13 1_555 E O4 DT 12 E DT 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 D N1 DA 14 D DA 14 1_555 E N3 DT 11 E DT 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 D N6 DA 14 D DA 14 1_555 E O4 DT 11 E DT 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 D N3 DT 15 D DT 15 1_555 E N1 DA 10 E DA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 D O4 DT 15 D DT 15 1_555 E N6 DA 10 E DA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 D N1 DG 16 D DG 16 1_555 E N3 DC 9 E DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 D N2 DG 16 D DG 16 1_555 E O2 DC 9 E DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 D O6 DG 16 D DG 16 1_555 E N4 DC 9 E DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 D N3 DT 17 D DT 17 1_555 E N1 DA 8 E DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 D O4 DT 17 D DT 17 1_555 E N6 DA 8 E DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 D N1 DG 18 D DG 18 1_555 E N3 DC 7 E DC 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 D N2 DG 18 D DG 18 1_555 E O2 DC 7 E DC 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 D O6 DG 18 D DG 18 1_555 E N4 DC 7 E DC 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 D N1 DA 19 D DA 19 1_555 E N3 DT 6 E DT 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 D N6 DA 19 D DA 19 1_555 E O4 DT 6 E DT 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 D N3 DT 20 D DT 20 1_555 E N1 DA 5 E DA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 D O4 DT 20 D DT 20 1_555 E N6 DA 5 E DA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 423 n n C1 C2 PEG sing 424 n n C1 H11 PEG sing 425 n n C1 H12 PEG sing 426 n n O1 HO1 PEG sing 427 n n C2 O2 PEG sing 428 n n C2 H21 PEG sing 429 n n C2 H22 PEG sing 430 n n O2 C3 PEG sing 431 n n C3 C4 PEG sing 432 n n C3 H31 PEG sing 433 n n C3 H32 PEG sing 434 n n C4 O4 PEG sing 435 n n C4 H41 PEG sing 436 n n C4 H42 PEG sing 437 n n O4 HO4 PEG sing 438 n n # _atom_sites.entry_id 3N4M _atom_sites.fract_transf_matrix[1][1] 0.005691 _atom_sites.fract_transf_matrix[1][2] 0.003285 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 CMP A 1 210 210 CMP CMP . G 6 PEG A 1 501 501 PEG PEG . H 6 PEG A 1 502 502 PEG PEG . I 5 CMP D 1 100 100 CMP CMP . J 7 HOH A 1 211 7 HOH HOH . J 7 HOH A 2 212 11 HOH HOH . J 7 HOH A 3 213 13 HOH HOH . J 7 HOH A 4 214 25 HOH HOH . J 7 HOH A 5 215 42 HOH HOH . J 7 HOH A 6 216 44 HOH HOH . J 7 HOH A 7 217 88 HOH HOH . J 7 HOH A 8 218 90 HOH HOH . J 7 HOH A 9 219 91 HOH HOH . J 7 HOH A 10 220 96 HOH HOH . J 7 HOH A 11 221 100 HOH HOH . K 7 HOH D 1 21 21 HOH HOH . K 7 HOH D 2 22 12 HOH HOH . K 7 HOH D 3 23 14 HOH HOH . K 7 HOH D 4 24 20 HOH HOH . K 7 HOH D 5 49 49 HOH HOH . K 7 HOH D 6 57 57 HOH HOH . K 7 HOH D 7 60 60 HOH HOH . K 7 HOH D 8 64 64 HOH HOH . K 7 HOH D 9 68 68 HOH HOH . K 7 HOH D 10 77 77 HOH HOH . K 7 HOH D 11 80 80 HOH HOH . K 7 HOH D 12 81 81 HOH HOH . K 7 HOH D 13 102 102 HOH HOH . L 7 HOH E 1 19 19 HOH HOH . L 7 HOH E 2 45 23 HOH HOH . L 7 HOH E 3 46 46 HOH HOH . L 7 HOH E 4 47 47 HOH HOH . L 7 HOH E 5 48 27 HOH HOH . L 7 HOH E 6 49 31 HOH HOH . L 7 HOH E 7 50 43 HOH HOH . L 7 HOH E 8 69 69 HOH HOH . L 7 HOH E 9 73 73 HOH HOH . L 7 HOH E 10 82 82 HOH HOH . L 7 HOH E 11 101 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . H 6 121.948 -38.846 164.896 1 155.04 ? C1 PEG 502 A 1 HETATM 2 O O1 PEG . . . H 6 121.17 -38.871 166.054 1 153.18 ? O1 PEG 502 A 1 HETATM 3 C C2 PEG . . . H 6 121.078 -39.073 163.638 1 142.1 ? C2 PEG 502 A 1 HETATM 4 O O2 PEG . . . H 6 120.621 -40.408 163.507 1 131.96 ? O2 PEG 502 A 1 HETATM 5 C C3 PEG . . . H 6 119.442 -40.578 164.27 1 125.54 ? C3 PEG 502 A 1 HETATM 6 C C4 PEG . . . H 6 119.423 -41.893 165.076 1 115.18 ? C4 PEG 502 A 1 HETATM 7 O O4 PEG . . . H 6 118.83 -41.663 166.317 1 115.2 ? O4 PEG 502 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #