data_3N51
#
_model_server_result.job_id            BahJp_ksesRaXJfCEyO-kA 
_model_server_result.datetime_utc      '2024-11-16 04:31:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3n51 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":701}' 
#
_entry.id    3N51 
#
_exptl.entry_id    3N51 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              372.466 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-(naphthalen-1-ylmethyl)-1-(piperidin-4-ylmethyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.88 
_cell.angle_gamma         90 
_cell.entry_id            3N51 
_cell.length_a            47.523 
_cell.length_b            72.754 
_cell.length_c            66.024 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3N51 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C22 H24 N6' 
_chem_comp.formula_weight    372.466 
_chem_comp.id                BK3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-(naphthalen-1-ylmethyl)-1-(piperidin-4-ylmethyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 N1 BK3 doub 70 n y 
N1 C6 BK3 sing 71 n y 
N3 C2 BK3 sing 72 n y 
C2 H2 BK3 sing 73 n n 
N3 C4 BK3 doub 74 n y 
NBB C4 BK3 sing 75 n y 
C4 C5 BK3 sing 76 n y 
CAV C5 BK3 sing 77 n y 
C5 C6 BK3 doub 78 n y 
C6 NAA BK3 sing 79 n n 
NAA HNAA BK3 sing 80 n n 
NAA HNAB BK3 sing 81 n n 
CAO NBB BK3 sing 82 n n 
NBB NAR BK3 sing 83 n y 
NAR CAV BK3 doub 84 n y 
CAJ NAS BK3 sing 85 n n 
NAS CAK BK3 sing 86 n n 
NAS HNAS BK3 sing 87 n n 
CAC CAB BK3 doub 88 n y 
CAG CAB BK3 sing 89 n y 
CAB HAB BK3 sing 90 n n 
CAI CAC BK3 sing 91 n y 
CAC HAC BK3 sing 92 n n 
CAE CAD BK3 sing 93 n y 
CAD CAH BK3 doub 94 n y 
CAD HAD BK3 sing 95 n n 
CAE CAU BK3 doub 96 n y 
CAE HAE BK3 sing 97 n n 
CAW CAG BK3 doub 98 n y 
CAG HAG BK3 sing 99 n n 
CAH CAW BK3 sing 100 n y 
CAH HAH BK3 sing 101 n n 
CAX CAI BK3 doub 102 n y 
CAI HAI BK3 sing 103 n n 
CAJ CAL BK3 sing 104 n n 
CAJ HAJ BK3 sing 105 n n 
CAJ HAJA BK3 sing 106 n n 
CAK CAM BK3 sing 107 n n 
CAK HAK BK3 sing 108 n n 
CAK HAKA BK3 sing 109 n n 
CAL CBA BK3 sing 110 n n 
CAL HAL BK3 sing 111 n n 
CAL HALA BK3 sing 112 n n 
CBA CAM BK3 sing 113 n n 
CAM HAM BK3 sing 114 n n 
CAM HAMA BK3 sing 115 n n 
CAV CAN BK3 sing 116 n n 
CAN CAU BK3 sing 117 n n 
CAN HAN BK3 sing 118 n n 
CAN HANA BK3 sing 119 n n 
CBA CAO BK3 sing 120 n n 
CAO HAO BK3 sing 121 n n 
CAO HAOA BK3 sing 122 n n 
CAU CAX BK3 sing 123 n y 
CAX CAW BK3 sing 124 n y 
CBA HBA BK3 sing 125 n n 
#
_atom_sites.entry_id                     3N51 
_atom_sites.fract_transf_matrix[1][1]    0.021042 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003289 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013745 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01533 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BK3 A 1 701 701 BK3 BK3 . 
C 3 DMS A 1 705 705 DMS DMS . 
D 4 EDO A 1 706 706 EDO EDO . 
E 5 HOH A 1 801 801 HOH HOH . 
E 5 HOH A 2 802 802 HOH HOH . 
E 5 HOH A 3 803 803 HOH HOH . 
E 5 HOH A 4 804 804 HOH HOH . 
E 5 HOH A 5 805 805 HOH HOH . 
E 5 HOH A 6 806 806 HOH HOH . 
E 5 HOH A 7 807 807 HOH HOH . 
E 5 HOH A 8 808 808 HOH HOH . 
E 5 HOH A 9 809 809 HOH HOH . 
E 5 HOH A 10 810 810 HOH HOH . 
E 5 HOH A 11 811 811 HOH HOH . 
E 5 HOH A 12 812 812 HOH HOH . 
E 5 HOH A 13 813 813 HOH HOH . 
E 5 HOH A 14 814 814 HOH HOH . 
E 5 HOH A 15 815 815 HOH HOH . 
E 5 HOH A 16 816 816 HOH HOH . 
E 5 HOH A 17 817 817 HOH HOH . 
E 5 HOH A 18 818 818 HOH HOH . 
E 5 HOH A 19 819 819 HOH HOH . 
E 5 HOH A 20 820 820 HOH HOH . 
E 5 HOH A 21 821 821 HOH HOH . 
E 5 HOH A 22 822 822 HOH HOH . 
E 5 HOH A 23 823 823 HOH HOH . 
E 5 HOH A 24 824 824 HOH HOH . 
E 5 HOH A 25 825 825 HOH HOH . 
E 5 HOH A 26 826 826 HOH HOH . 
E 5 HOH A 27 827 827 HOH HOH . 
E 5 HOH A 28 828 828 HOH HOH . 
E 5 HOH A 29 829 829 HOH HOH . 
E 5 HOH A 30 830 830 HOH HOH . 
E 5 HOH A 31 831 831 HOH HOH . 
E 5 HOH A 32 832 832 HOH HOH . 
E 5 HOH A 33 833 833 HOH HOH . 
E 5 HOH A 34 834 834 HOH HOH . 
E 5 HOH A 35 835 835 HOH HOH . 
E 5 HOH A 36 836 836 HOH HOH . 
E 5 HOH A 37 837 837 HOH HOH . 
E 5 HOH A 38 838 838 HOH HOH . 
E 5 HOH A 39 839 839 HOH HOH . 
E 5 HOH A 40 840 840 HOH HOH . 
E 5 HOH A 41 841 841 HOH HOH . 
E 5 HOH A 42 842 842 HOH HOH . 
E 5 HOH A 43 843 843 HOH HOH . 
E 5 HOH A 44 844 844 HOH HOH . 
E 5 HOH A 45 845 845 HOH HOH . 
E 5 HOH A 46 846 846 HOH HOH . 
E 5 HOH A 47 847 847 HOH HOH . 
E 5 HOH A 48 848 848 HOH HOH . 
E 5 HOH A 49 849 849 HOH HOH . 
E 5 HOH A 50 850 850 HOH HOH . 
E 5 HOH A 51 851 851 HOH HOH . 
E 5 HOH A 52 852 852 HOH HOH . 
E 5 HOH A 53 853 853 HOH HOH . 
E 5 HOH A 54 854 854 HOH HOH . 
E 5 HOH A 55 855 855 HOH HOH . 
E 5 HOH A 56 856 856 HOH HOH . 
E 5 HOH A 57 857 857 HOH HOH . 
E 5 HOH A 58 858 858 HOH HOH . 
E 5 HOH A 59 859 859 HOH HOH . 
E 5 HOH A 60 860 860 HOH HOH . 
E 5 HOH A 61 861 861 HOH HOH . 
E 5 HOH A 62 862 862 HOH HOH . 
E 5 HOH A 63 863 863 HOH HOH . 
E 5 HOH A 64 864 864 HOH HOH . 
E 5 HOH A 65 865 865 HOH HOH . 
E 5 HOH A 66 866 866 HOH HOH . 
E 5 HOH A 67 867 867 HOH HOH . 
E 5 HOH A 68 868 868 HOH HOH . 
E 5 HOH A 69 869 869 HOH HOH . 
E 5 HOH A 70 870 870 HOH HOH . 
E 5 HOH A 71 871 871 HOH HOH . 
E 5 HOH A 72 872 872 HOH HOH . 
E 5 HOH A 73 873 873 HOH HOH . 
E 5 HOH A 74 874 874 HOH HOH . 
E 5 HOH A 75 875 875 HOH HOH . 
E 5 HOH A 76 876 876 HOH HOH . 
E 5 HOH A 77 877 877 HOH HOH . 
E 5 HOH A 78 878 878 HOH HOH . 
E 5 HOH A 79 879 879 HOH HOH . 
E 5 HOH A 80 880 880 HOH HOH . 
E 5 HOH A 81 881 881 HOH HOH . 
E 5 HOH A 82 882 882 HOH HOH . 
E 5 HOH A 83 883 883 HOH HOH . 
E 5 HOH A 84 884 884 HOH HOH . 
E 5 HOH A 85 885 885 HOH HOH . 
E 5 HOH A 86 886 886 HOH HOH . 
E 5 HOH A 87 887 887 HOH HOH . 
E 5 HOH A 88 888 888 HOH HOH . 
E 5 HOH A 89 889 889 HOH HOH . 
E 5 HOH A 90 890 890 HOH HOH . 
E 5 HOH A 91 891 891 HOH HOH . 
E 5 HOH A 92 892 892 HOH HOH . 
E 5 HOH A 93 893 893 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 BK3 . . . B 2 21.694 12.44 63.667 1 31.9 ? N1 BK3 701 A 1 
HETATM 2 C C2 BK3 . . . B 2 22.859 13.1 63.633 1 35.61 ? C2 BK3 701 A 1 
HETATM 3 N N3 BK3 . . . B 2 22.925 14.429 63.639 1 32.88 ? N3 BK3 701 A 1 
HETATM 4 C C4 BK3 . . . B 2 21.803 15.168 63.619 1 33.68 ? C4 BK3 701 A 1 
HETATM 5 C C5 BK3 . . . B 2 20.576 14.53 63.646 1 33.26 ? C5 BK3 701 A 1 
HETATM 6 C C6 BK3 . . . B 2 20.54 13.122 63.692 1 33.25 ? C6 BK3 701 A 1 
HETATM 7 N NAA BK3 . . . B 2 19.41 12.435 63.732 1 33.91 ? NAA BK3 701 A 1 
HETATM 8 N NBB BK3 . . . B 2 21.543 16.488 63.589 1 34.09 ? NBB BK3 701 A 1 
HETATM 9 N NAR BK3 . . . B 2 20.336 16.73 63.623 1 36.36 ? NAR BK3 701 A 1 
HETATM 10 N NAS BK3 . . . B 2 23.493 19.711 59.936 1 41.68 ? NAS BK3 701 A 1 
HETATM 11 C CAB BK3 . . . B 2 13.299 15.472 65.477 1 37.33 ? CAB BK3 701 A 1 
HETATM 12 C CAC BK3 . . . B 2 13.889 15.841 64.266 1 36.28 ? CAC BK3 701 A 1 
HETATM 13 C CAD BK3 . . . B 2 17.642 14.382 67.267 1 33.88 ? CAD BK3 701 A 1 
HETATM 14 C CAE BK3 . . . B 2 18.249 14.737 66.056 1 33.05 ? CAE BK3 701 A 1 
HETATM 15 C CAG BK3 . . . B 2 14.1 15.015 66.518 1 33.33 ? CAG BK3 701 A 1 
HETATM 16 C CAH BK3 . . . B 2 16.274 14.472 67.406 1 34.58 ? CAH BK3 701 A 1 
HETATM 17 C CAI BK3 . . . B 2 15.274 15.745 64.123 1 38.16 ? CAI BK3 701 A 1 
HETATM 18 C CAJ BK3 . . . B 2 24.65 19.185 60.69 1 38.95 ? CAJ BK3 701 A 1 
HETATM 19 C CAK BK3 . . . B 2 22.472 18.646 59.776 1 37.05 ? CAK BK3 701 A 1 
HETATM 20 C CAL BK3 . . . B 2 24.171 18.886 62.132 1 41.29 ? CAL BK3 701 A 1 
HETATM 21 C CAM BK3 . . . B 2 21.929 18.268 61.166 1 42.81 ? CAM BK3 701 A 1 
HETATM 22 C CAN BK3 . . . B 2 18.138 15.561 63.677 1 33.18 ? CAN BK3 701 A 1 
HETATM 23 C CAO BK3 . . . B 2 22.529 17.557 63.552 1 35.89 ? CAO BK3 701 A 1 
HETATM 24 C CAU BK3 . . . B 2 17.469 15.184 64.995 1 34.31 ? CAU BK3 701 A 1 
HETATM 25 C CAV BK3 . . . B 2 19.651 15.589 63.657 1 34.25 ? CAV BK3 701 A 1 
HETATM 26 C CAW BK3 . . . B 2 15.488 14.928 66.36 1 33.1 ? CAW BK3 701 A 1 
HETATM 27 C CAX BK3 . . . B 2 16.082 15.284 65.165 1 31.67 ? CAX BK3 701 A 1 
HETATM 28 C CBA BK3 . . . B 2 23.065 17.808 62.116 1 39.05 ? CBA BK3 701 A 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           28 
#