data_3N56 # _model_server_result.job_id sVDnrtCtp69V2WhDYRnLZg _model_server_result.datetime_utc '2024-12-23 09:46:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n56 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":4006}' # _entry.id 3N56 # _exptl.entry_id 3N56 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.105 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIETHYLENE DIOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3N56 _cell.length_a 264.036 _cell.length_b 264.036 _cell.length_c 90.645 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N56 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I 1 1 B,D,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 108 1_555 E ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc2 A NE2 HIS 83 A HIS 112 1_555 E ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc3 A OE1 GLU 160 A GLU 189 1_555 E ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? metalc ? metalc4 B NE2 HIS 79 B HIS 108 1_555 H ZN ZN . B ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc5 B NE2 HIS 83 B HIS 112 1_555 H ZN ZN . B ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc6 B OE1 GLU 160 B GLU 189 1_555 H ZN ZN . B ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C4 H8 O2' _chem_comp.formula_weight 88.105 _chem_comp.id DIO _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIETHYLENE DIOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C1' DIO sing 83 n n C1 O1 DIO sing 84 n n C1 H11 DIO sing 85 n n C1 H12 DIO sing 86 n n C2 C2' DIO sing 87 n n C2 O1 DIO sing 88 n n C2 H21 DIO sing 89 n n C2 H22 DIO sing 90 n n C1' O1' DIO sing 91 n n C1' "H1'1" DIO sing 92 n n C1' "H1'2" DIO sing 93 n n C2' O1' DIO sing 94 n n C2' "H2'1" DIO sing 95 n n C2' "H2'2" DIO sing 96 n n # _atom_sites.entry_id 3N56 _atom_sites.fract_transf_matrix[1][1] 0.003787 _atom_sites.fract_transf_matrix[1][2] 0.002187 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004373 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011032 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 2001 2001 ZN ZN . F 4 DIO A 1 4001 4001 DIO DIO . G 4 DIO B 1 4006 4006 DIO DIO . H 3 ZN B 1 2002 2002 ZN ZN . I 5 HOH A 1 1 1 HOH HOH . I 5 HOH A 2 2 2 HOH HOH . I 5 HOH A 3 5 5 HOH HOH . I 5 HOH A 4 9 9 HOH HOH . I 5 HOH A 5 11 11 HOH HOH . I 5 HOH A 6 16 16 HOH HOH . I 5 HOH A 7 18 18 HOH HOH . I 5 HOH A 8 24 24 HOH HOH . I 5 HOH A 9 1020 35 HOH HOH . I 5 HOH A 10 1021 36 HOH HOH . I 5 HOH A 11 1022 37 HOH HOH . I 5 HOH A 12 1023 40 HOH HOH . I 5 HOH A 13 1024 42 HOH HOH . I 5 HOH A 14 1025 43 HOH HOH . I 5 HOH A 15 1026 44 HOH HOH . I 5 HOH A 16 1027 46 HOH HOH . I 5 HOH A 17 1028 50 HOH HOH . I 5 HOH A 18 1029 51 HOH HOH . I 5 HOH A 19 1030 54 HOH HOH . I 5 HOH A 20 1031 56 HOH HOH . I 5 HOH A 21 1032 23 HOH HOH . J 5 HOH B 1 3 3 HOH HOH . J 5 HOH B 2 4 4 HOH HOH . J 5 HOH B 3 6 6 HOH HOH . J 5 HOH B 4 7 7 HOH HOH . J 5 HOH B 5 8 8 HOH HOH . J 5 HOH B 6 10 10 HOH HOH . J 5 HOH B 7 12 12 HOH HOH . J 5 HOH B 8 14 14 HOH HOH . J 5 HOH B 9 15 15 HOH HOH . J 5 HOH B 10 20 20 HOH HOH . J 5 HOH B 11 21 21 HOH HOH . J 5 HOH B 12 25 25 HOH HOH . J 5 HOH B 13 26 26 HOH HOH . J 5 HOH B 14 27 27 HOH HOH . J 5 HOH B 15 28 28 HOH HOH . J 5 HOH B 16 29 29 HOH HOH . J 5 HOH B 17 1020 32 HOH HOH . J 5 HOH B 18 1021 33 HOH HOH . J 5 HOH B 19 1022 34 HOH HOH . J 5 HOH B 20 1023 38 HOH HOH . J 5 HOH B 21 1024 39 HOH HOH . J 5 HOH B 22 1025 41 HOH HOH . J 5 HOH B 23 1026 45 HOH HOH . J 5 HOH B 24 1027 47 HOH HOH . J 5 HOH B 25 1028 48 HOH HOH . J 5 HOH B 26 1029 49 HOH HOH . J 5 HOH B 27 1030 52 HOH HOH . J 5 HOH B 28 1031 53 HOH HOH . J 5 HOH B 29 1032 55 HOH HOH . J 5 HOH B 30 1033 58 HOH HOH . J 5 HOH B 31 1034 60 HOH HOH . J 5 HOH B 32 1035 61 HOH HOH . J 5 HOH B 33 1036 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DIO . . . G 4 93.079 -66.775 -33.995 1 94.4 ? C1 DIO 4006 B 1 HETATM 2 C C2 DIO . . . G 4 91.859 -66.98 -36.047 1 94.29 ? C2 DIO 4006 B 1 HETATM 3 C C1' DIO . . . G 4 94.176 -67.685 -34.548 1 94.42 ? C1' DIO 4006 B 1 HETATM 4 C C2' DIO . . . G 4 92.947 -67.899 -36.6 1 94.35 ? C2' DIO 4006 B 1 HETATM 5 O O1 DIO . . . G 4 91.827 -67.081 -34.62 1 94.3 ? O1 DIO 4006 B 1 HETATM 6 O O1' DIO . . . G 4 94.202 -67.596 -35.977 1 94.43 ? O1' DIO 4006 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #