data_3N5A # _model_server_result.job_id IkYYSC3J_rpBL8c8zDmtGA _model_server_result.datetime_utc '2025-01-10 20:24:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n5a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":103}' # _entry.id 3N5A # _exptl.entry_id 3N5A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3N5A _cell.length_a 35.598 _cell.length_b 44.892 _cell.length_c 87.383 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O HOH . A HOH 34 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc2 F O HOH . A HOH 64 1_555 E CA CA . A CA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc3 F O HOH . A HOH 99 1_555 D CA CA . A CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc4 B CA CA . A CA 101 1_555 F O HOH . A HOH 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc5 B CA CA . A CA 101 1_555 A OD2 ASP 32 A ASP 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc6 B CA CA . A CA 101 1_555 A OD1 ASP 32 A ASP 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc7 B CA CA . A CA 101 1_555 A OD2 ASP 38 A ASP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc8 B CA CA . A CA 101 1_555 A OD1 ASP 92 A ASP 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc9 B CA CA . A CA 101 1_555 A O LYS 93 A LYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc10 B CA CA . A CA 101 1_555 A OD1 ASP 94 A ASP 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc11 C CA CA . A CA 102 1_555 A O MET 31 A MET 296 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.319 ? metalc ? metalc12 C CA CA . A CA 102 1_555 A O MET 31 A MET 296 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.558 ? metalc ? metalc13 C CA CA . A CA 102 1_555 A OD1 ASP 32 A ASP 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc14 C CA CA . A CA 102 1_555 A OD2 ASP 92 A ASP 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc15 C CA CA . A CA 102 1_555 A OD2 ASP 94 A ASP 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc16 C CA CA . A CA 102 1_555 A OD1 ASP 94 A ASP 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc17 C CA CA . A CA 102 1_555 A OD2 ASP 100 A ASP 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc18 D CA CA . A CA 103 1_555 A OD2 ASP 94 A ASP 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc19 D CA CA . A CA 103 1_555 A OG SER 97 A SER 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc20 D CA CA . A CA 103 1_555 A O ARG 98 A ARG 363 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.324 ? metalc ? metalc21 D CA CA . A CA 103 1_555 A O ARG 98 A ARG 363 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.5 ? metalc ? metalc22 D CA CA . A CA 103 1_555 A OD1 ASP 100 A ASP 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc23 E CA CA . A CA 104 1_555 A O ASP 94 A ASP 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc24 E CA CA . A CA 104 1_555 A O SER 97 A SER 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc25 E CA CA . A CA 104 1_555 A OD1 ASN 99 A ASN 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3N5A _atom_sites.fract_transf_matrix[1][1] 0.028091 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011444 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 101 101 CA CA . C 2 CA A 1 102 102 CA CA . D 2 CA A 1 103 103 CA CA . E 2 CA A 1 104 104 CA CA . F 3 HOH A 1 1 1 HOH HOH . F 3 HOH A 2 2 2 HOH HOH . F 3 HOH A 3 3 3 HOH HOH . F 3 HOH A 4 4 4 HOH HOH . F 3 HOH A 5 5 5 HOH HOH . F 3 HOH A 6 6 6 HOH HOH . F 3 HOH A 7 7 7 HOH HOH . F 3 HOH A 8 8 8 HOH HOH . F 3 HOH A 9 9 9 HOH HOH . F 3 HOH A 10 10 10 HOH HOH . F 3 HOH A 11 11 11 HOH HOH . F 3 HOH A 12 12 12 HOH HOH . F 3 HOH A 13 13 13 HOH HOH . F 3 HOH A 14 14 14 HOH HOH . F 3 HOH A 15 15 15 HOH HOH . F 3 HOH A 16 16 16 HOH HOH . F 3 HOH A 17 17 17 HOH HOH . F 3 HOH A 18 18 18 HOH HOH . F 3 HOH A 19 19 19 HOH HOH . F 3 HOH A 20 20 20 HOH HOH . F 3 HOH A 21 21 21 HOH HOH . F 3 HOH A 22 22 22 HOH HOH . F 3 HOH A 23 23 23 HOH HOH . F 3 HOH A 24 24 24 HOH HOH . F 3 HOH A 25 25 25 HOH HOH . F 3 HOH A 26 26 26 HOH HOH . F 3 HOH A 27 27 27 HOH HOH . F 3 HOH A 28 28 28 HOH HOH . F 3 HOH A 29 29 29 HOH HOH . F 3 HOH A 30 30 30 HOH HOH . F 3 HOH A 31 31 31 HOH HOH . F 3 HOH A 32 32 32 HOH HOH . F 3 HOH A 33 33 33 HOH HOH . F 3 HOH A 34 34 34 HOH HOH . F 3 HOH A 35 35 35 HOH HOH . F 3 HOH A 36 36 36 HOH HOH . F 3 HOH A 37 37 37 HOH HOH . F 3 HOH A 38 38 38 HOH HOH . F 3 HOH A 39 39 39 HOH HOH . F 3 HOH A 40 40 40 HOH HOH . F 3 HOH A 41 41 41 HOH HOH . F 3 HOH A 42 42 42 HOH HOH . F 3 HOH A 43 43 43 HOH HOH . F 3 HOH A 44 44 44 HOH HOH . F 3 HOH A 45 45 45 HOH HOH . F 3 HOH A 46 46 46 HOH HOH . F 3 HOH A 47 47 47 HOH HOH . F 3 HOH A 48 48 48 HOH HOH . F 3 HOH A 49 49 49 HOH HOH . F 3 HOH A 50 50 50 HOH HOH . F 3 HOH A 51 51 51 HOH HOH . F 3 HOH A 52 52 52 HOH HOH . F 3 HOH A 53 53 53 HOH HOH . F 3 HOH A 54 54 54 HOH HOH . F 3 HOH A 55 55 55 HOH HOH . F 3 HOH A 56 56 56 HOH HOH . F 3 HOH A 57 57 57 HOH HOH . F 3 HOH A 58 58 58 HOH HOH . F 3 HOH A 59 59 59 HOH HOH . F 3 HOH A 60 60 60 HOH HOH . F 3 HOH A 61 61 61 HOH HOH . F 3 HOH A 62 62 62 HOH HOH . F 3 HOH A 63 63 63 HOH HOH . F 3 HOH A 64 64 64 HOH HOH . F 3 HOH A 65 65 65 HOH HOH . F 3 HOH A 66 66 66 HOH HOH . F 3 HOH A 67 67 67 HOH HOH . F 3 HOH A 68 68 68 HOH HOH . F 3 HOH A 69 69 69 HOH HOH . F 3 HOH A 70 70 70 HOH HOH . F 3 HOH A 71 71 71 HOH HOH . F 3 HOH A 72 72 72 HOH HOH . F 3 HOH A 73 73 73 HOH HOH . F 3 HOH A 74 74 74 HOH HOH . F 3 HOH A 75 75 75 HOH HOH . F 3 HOH A 76 76 76 HOH HOH . F 3 HOH A 77 77 77 HOH HOH . F 3 HOH A 78 78 78 HOH HOH . F 3 HOH A 79 79 79 HOH HOH . F 3 HOH A 80 80 80 HOH HOH . F 3 HOH A 81 81 81 HOH HOH . F 3 HOH A 82 82 82 HOH HOH . F 3 HOH A 83 83 83 HOH HOH . F 3 HOH A 84 84 84 HOH HOH . F 3 HOH A 85 85 85 HOH HOH . F 3 HOH A 86 86 86 HOH HOH . F 3 HOH A 87 87 87 HOH HOH . F 3 HOH A 88 88 88 HOH HOH . F 3 HOH A 89 89 89 HOH HOH . F 3 HOH A 90 90 90 HOH HOH . F 3 HOH A 91 91 91 HOH HOH . F 3 HOH A 92 92 92 HOH HOH . F 3 HOH A 93 93 93 HOH HOH . F 3 HOH A 94 94 94 HOH HOH . F 3 HOH A 95 95 95 HOH HOH . F 3 HOH A 96 96 96 HOH HOH . F 3 HOH A 97 97 97 HOH HOH . F 3 HOH A 98 98 98 HOH HOH . F 3 HOH A 99 99 99 HOH HOH . F 3 HOH A 100 100 100 HOH HOH . F 3 HOH A 101 105 105 HOH HOH . F 3 HOH A 102 106 106 HOH HOH . F 3 HOH A 103 107 107 HOH HOH . F 3 HOH A 104 108 108 HOH HOH . F 3 HOH A 105 109 109 HOH HOH . F 3 HOH A 106 110 110 HOH HOH . F 3 HOH A 107 111 111 HOH HOH . F 3 HOH A 108 112 112 HOH HOH . F 3 HOH A 109 113 113 HOH HOH . F 3 HOH A 110 114 114 HOH HOH . F 3 HOH A 111 115 115 HOH HOH . F 3 HOH A 112 116 116 HOH HOH . F 3 HOH A 113 117 117 HOH HOH . F 3 HOH A 114 118 118 HOH HOH . F 3 HOH A 115 119 119 HOH HOH . F 3 HOH A 116 120 120 HOH HOH . F 3 HOH A 117 121 121 HOH HOH . F 3 HOH A 118 122 122 HOH HOH . F 3 HOH A 119 123 123 HOH HOH . F 3 HOH A 120 124 124 HOH HOH . F 3 HOH A 121 125 125 HOH HOH . F 3 HOH A 122 126 126 HOH HOH . F 3 HOH A 123 127 127 HOH HOH . F 3 HOH A 124 128 128 HOH HOH . F 3 HOH A 125 129 129 HOH HOH . F 3 HOH A 126 130 130 HOH HOH . F 3 HOH A 127 131 131 HOH HOH . F 3 HOH A 128 132 132 HOH HOH . F 3 HOH A 129 133 133 HOH HOH . F 3 HOH A 130 134 134 HOH HOH . F 3 HOH A 131 135 135 HOH HOH . F 3 HOH A 132 136 136 HOH HOH . F 3 HOH A 133 137 137 HOH HOH . F 3 HOH A 134 138 138 HOH HOH . F 3 HOH A 135 139 139 HOH HOH . F 3 HOH A 136 140 140 HOH HOH . F 3 HOH A 137 141 141 HOH HOH . F 3 HOH A 138 142 142 HOH HOH . F 3 HOH A 139 143 143 HOH HOH . F 3 HOH A 140 144 144 HOH HOH . F 3 HOH A 141 145 145 HOH HOH . F 3 HOH A 142 146 146 HOH HOH . F 3 HOH A 143 147 147 HOH HOH . F 3 HOH A 144 148 148 HOH HOH . F 3 HOH A 145 149 149 HOH HOH . F 3 HOH A 146 150 150 HOH HOH . F 3 HOH A 147 151 151 HOH HOH . F 3 HOH A 148 152 152 HOH HOH . F 3 HOH A 149 153 153 HOH HOH . F 3 HOH A 150 154 154 HOH HOH . F 3 HOH A 151 155 155 HOH HOH . F 3 HOH A 152 156 156 HOH HOH . F 3 HOH A 153 157 157 HOH HOH . F 3 HOH A 154 158 158 HOH HOH . F 3 HOH A 155 159 159 HOH HOH . F 3 HOH A 156 160 160 HOH HOH . F 3 HOH A 157 161 161 HOH HOH . F 3 HOH A 158 162 162 HOH HOH . F 3 HOH A 159 163 163 HOH HOH . F 3 HOH A 160 164 164 HOH HOH . F 3 HOH A 161 165 165 HOH HOH . F 3 HOH A 162 166 166 HOH HOH . F 3 HOH A 163 167 167 HOH HOH . F 3 HOH A 164 168 168 HOH HOH . F 3 HOH A 165 169 169 HOH HOH . F 3 HOH A 166 170 170 HOH HOH . F 3 HOH A 167 171 171 HOH HOH . F 3 HOH A 168 172 172 HOH HOH . F 3 HOH A 169 173 173 HOH HOH . F 3 HOH A 170 174 174 HOH HOH . F 3 HOH A 171 175 175 HOH HOH . F 3 HOH A 172 176 176 HOH HOH . F 3 HOH A 173 177 177 HOH HOH . F 3 HOH A 174 178 178 HOH HOH . F 3 HOH A 175 179 179 HOH HOH . F 3 HOH A 176 180 180 HOH HOH . F 3 HOH A 177 181 181 HOH HOH . F 3 HOH A 178 182 182 HOH HOH . F 3 HOH A 179 183 183 HOH HOH . F 3 HOH A 180 404 101 HOH HOH . F 3 HOH A 181 405 102 HOH HOH . F 3 HOH A 182 406 103 HOH HOH . F 3 HOH A 183 407 104 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 16.845 _atom_site.Cartn_y 9.95 _atom_site.Cartn_z 9.082 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 103 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #