data_3N5J # _model_server_result.job_id OvU3T2vJg1pEbWckgy9g4Q _model_server_result.datetime_utc '2024-11-06 03:06:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n5j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":354}' # _entry.id 3N5J # _exptl.entry_id 3N5J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3N5J _cell.length_a 111.112 _cell.length_b 111.112 _cell.length_c 78.245 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N5J _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 111.112 111.112 39.1225 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 286 n n P O2 PO4 sing 287 n n P O3 PO4 sing 288 n n P O4 PO4 sing 289 n n # _atom_sites.entry_id 3N5J _atom_sites.fract_transf_matrix[1][1] 0.009 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GO1 F 1 1 1 GO1 GO1 . C 2 GO1 F 1 2 2 GO1 GO1 . D 3 PO4 F 1 354 1 PO4 PO4 . E 4 HOH F 1 3 3 HOH HOH . E 4 HOH F 2 355 1 HOH HOH . E 4 HOH F 3 356 2 HOH HOH . E 4 HOH F 4 357 4 HOH HOH . E 4 HOH F 5 358 5 HOH HOH . E 4 HOH F 6 359 6 HOH HOH . E 4 HOH F 7 360 7 HOH HOH . E 4 HOH F 8 361 8 HOH HOH . E 4 HOH F 9 362 9 HOH HOH . E 4 HOH F 10 363 10 HOH HOH . E 4 HOH F 11 364 11 HOH HOH . E 4 HOH F 12 365 12 HOH HOH . E 4 HOH F 13 366 13 HOH HOH . E 4 HOH F 14 367 14 HOH HOH . E 4 HOH F 15 368 15 HOH HOH . E 4 HOH F 16 369 16 HOH HOH . E 4 HOH F 17 370 17 HOH HOH . E 4 HOH F 18 371 18 HOH HOH . E 4 HOH F 19 372 19 HOH HOH . E 4 HOH F 20 373 20 HOH HOH . E 4 HOH F 21 374 21 HOH HOH . E 4 HOH F 22 375 22 HOH HOH . E 4 HOH F 23 376 23 HOH HOH . E 4 HOH F 24 377 24 HOH HOH . E 4 HOH F 25 378 25 HOH HOH . E 4 HOH F 26 379 26 HOH HOH . E 4 HOH F 27 380 27 HOH HOH . E 4 HOH F 28 381 28 HOH HOH . E 4 HOH F 29 382 29 HOH HOH . E 4 HOH F 30 383 30 HOH HOH . E 4 HOH F 31 384 31 HOH HOH . E 4 HOH F 32 385 32 HOH HOH . E 4 HOH F 33 386 33 HOH HOH . E 4 HOH F 34 387 34 HOH HOH . E 4 HOH F 35 388 35 HOH HOH . E 4 HOH F 36 389 36 HOH HOH . E 4 HOH F 37 390 37 HOH HOH . E 4 HOH F 38 391 38 HOH HOH . E 4 HOH F 39 392 39 HOH HOH . E 4 HOH F 40 393 40 HOH HOH . E 4 HOH F 41 394 41 HOH HOH . E 4 HOH F 42 395 42 HOH HOH . E 4 HOH F 43 396 43 HOH HOH . E 4 HOH F 44 397 44 HOH HOH . E 4 HOH F 45 398 45 HOH HOH . E 4 HOH F 46 399 46 HOH HOH . E 4 HOH F 47 400 47 HOH HOH . E 4 HOH F 48 401 48 HOH HOH . E 4 HOH F 49 402 49 HOH HOH . E 4 HOH F 50 403 50 HOH HOH . E 4 HOH F 51 404 51 HOH HOH . E 4 HOH F 52 405 52 HOH HOH . E 4 HOH F 53 406 53 HOH HOH . E 4 HOH F 54 407 54 HOH HOH . E 4 HOH F 55 408 55 HOH HOH . E 4 HOH F 56 409 56 HOH HOH . E 4 HOH F 57 410 57 HOH HOH . E 4 HOH F 58 411 58 HOH HOH . E 4 HOH F 59 412 59 HOH HOH . E 4 HOH F 60 413 60 HOH HOH . E 4 HOH F 61 414 61 HOH HOH . E 4 HOH F 62 415 62 HOH HOH . E 4 HOH F 63 416 63 HOH HOH . E 4 HOH F 64 417 64 HOH HOH . E 4 HOH F 65 418 65 HOH HOH . E 4 HOH F 66 419 66 HOH HOH . E 4 HOH F 67 420 67 HOH HOH . E 4 HOH F 68 421 68 HOH HOH . E 4 HOH F 69 422 69 HOH HOH . E 4 HOH F 70 423 70 HOH HOH . E 4 HOH F 71 424 71 HOH HOH . E 4 HOH F 72 425 72 HOH HOH . E 4 HOH F 73 426 73 HOH HOH . E 4 HOH F 74 427 74 HOH HOH . E 4 HOH F 75 428 75 HOH HOH . E 4 HOH F 76 429 76 HOH HOH . E 4 HOH F 77 430 77 HOH HOH . E 4 HOH F 78 431 78 HOH HOH . E 4 HOH F 79 432 79 HOH HOH . E 4 HOH F 80 433 80 HOH HOH . E 4 HOH F 81 434 81 HOH HOH . E 4 HOH F 82 435 82 HOH HOH . E 4 HOH F 83 436 83 HOH HOH . E 4 HOH F 84 437 84 HOH HOH . E 4 HOH F 85 438 85 HOH HOH . E 4 HOH F 86 439 86 HOH HOH . E 4 HOH F 87 440 87 HOH HOH . E 4 HOH F 88 441 88 HOH HOH . E 4 HOH F 89 442 89 HOH HOH . E 4 HOH F 90 443 90 HOH HOH . E 4 HOH F 91 444 91 HOH HOH . E 4 HOH F 92 445 92 HOH HOH . E 4 HOH F 93 446 93 HOH HOH . E 4 HOH F 94 447 94 HOH HOH . E 4 HOH F 95 448 95 HOH HOH . E 4 HOH F 96 449 96 HOH HOH . E 4 HOH F 97 450 97 HOH HOH . E 4 HOH F 98 451 98 HOH HOH . E 4 HOH F 99 452 99 HOH HOH . E 4 HOH F 100 453 100 HOH HOH . E 4 HOH F 101 454 101 HOH HOH . E 4 HOH F 102 455 102 HOH HOH . E 4 HOH F 103 456 103 HOH HOH . E 4 HOH F 104 457 104 HOH HOH . E 4 HOH F 105 458 105 HOH HOH . E 4 HOH F 106 459 106 HOH HOH . E 4 HOH F 107 460 107 HOH HOH . E 4 HOH F 108 461 108 HOH HOH . E 4 HOH F 109 462 109 HOH HOH . E 4 HOH F 110 463 110 HOH HOH . E 4 HOH F 111 464 111 HOH HOH . E 4 HOH F 112 465 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 3 9.884 74.334 23.007 1 62.99 ? P PO4 354 F 1 HETATM 2 O O1 PO4 . . . D 3 10.117 74.458 24.465 1 61.73 ? O1 PO4 354 F 1 HETATM 3 O O2 PO4 . . . D 3 10.934 73.469 22.413 1 61.47 ? O2 PO4 354 F 1 HETATM 4 O O3 PO4 . . . D 3 8.544 73.734 22.764 1 61.38 ? O3 PO4 354 F 1 HETATM 5 O O4 PO4 . . . D 3 9.94 75.675 22.381 1 64.16 ? O4 PO4 354 F 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #