data_3N5N # _model_server_result.job_id lVpS6TyXOwKhcBiXIvkqTQ _model_server_result.datetime_utc '2024-11-04 23:18:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n5n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 3N5N # _exptl.entry_id 3N5N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.9 _cell.angle_gamma 90 _cell.entry_id 3N5N _cell.length_a 60.311 _cell.length_b 82.167 _cell.length_c 63.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N5N _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 212 X CYS 276 1_555 C FE2 SF4 . X SF4 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc2 A SG CYS 219 X CYS 283 1_555 C FE3 SF4 . X SF4 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc3 A SG CYS 222 X CYS 286 1_555 C FE1 SF4 . X SF4 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc4 A SG CYS 228 X CYS 292 1_555 C FE4 SF4 . X SF4 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc5 B SG CYS 212 Y CYS 276 1_555 D FE2 SF4 . Y SF4 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc6 B SG CYS 219 Y CYS 283 1_555 D FE3 SF4 . Y SF4 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc7 B SG CYS 222 Y CYS 286 1_555 D FE1 SF4 . Y SF4 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc8 B SG CYS 228 Y CYS 292 1_555 D FE4 SF4 . Y SF4 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 296 n n FE1 S3 SF4 sing 297 n n FE1 S4 SF4 sing 298 n n FE2 S1 SF4 sing 299 n n FE2 S3 SF4 sing 300 n n FE2 S4 SF4 sing 301 n n FE3 S1 SF4 sing 302 n n FE3 S2 SF4 sing 303 n n FE3 S4 SF4 sing 304 n n FE4 S1 SF4 sing 305 n n FE4 S2 SF4 sing 306 n n FE4 S3 SF4 sing 307 n n # _atom_sites.entry_id 3N5N _atom_sites.fract_transf_matrix[1][1] 0.016581 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003193 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01217 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SF4 X 1 400 400 SF4 FS4 . D 2 SF4 Y 1 400 400 SF4 FS4 . E 3 ACT Y 1 2 2 ACT ACT . F 4 HOH X 1 3 3 HOH HOH . F 4 HOH X 2 6 6 HOH HOH . F 4 HOH X 3 9 9 HOH HOH . F 4 HOH X 4 10 10 HOH HOH . F 4 HOH X 5 11 11 HOH HOH . F 4 HOH X 6 15 15 HOH HOH . F 4 HOH X 7 19 19 HOH HOH . F 4 HOH X 8 22 22 HOH HOH . F 4 HOH X 9 25 25 HOH HOH . F 4 HOH X 10 33 33 HOH HOH . F 4 HOH X 11 34 34 HOH HOH . F 4 HOH X 12 37 37 HOH HOH . F 4 HOH X 13 39 39 HOH HOH . F 4 HOH X 14 40 40 HOH HOH . F 4 HOH X 15 62 62 HOH HOH . F 4 HOH X 16 64 64 HOH HOH . F 4 HOH X 17 344 67 HOH HOH . F 4 HOH X 18 345 68 HOH HOH . F 4 HOH X 19 346 71 HOH HOH . F 4 HOH X 20 347 72 HOH HOH . F 4 HOH X 21 348 82 HOH HOH . F 4 HOH X 22 349 87 HOH HOH . F 4 HOH X 23 350 90 HOH HOH . G 4 HOH Y 1 1 1 HOH HOH . G 4 HOH Y 2 5 5 HOH HOH . G 4 HOH Y 3 7 7 HOH HOH . G 4 HOH Y 4 12 12 HOH HOH . G 4 HOH Y 5 14 14 HOH HOH . G 4 HOH Y 6 18 18 HOH HOH . G 4 HOH Y 7 24 24 HOH HOH . G 4 HOH Y 8 26 26 HOH HOH . G 4 HOH Y 9 29 29 HOH HOH . G 4 HOH Y 10 32 32 HOH HOH . G 4 HOH Y 11 42 42 HOH HOH . G 4 HOH Y 12 43 43 HOH HOH . G 4 HOH Y 13 44 44 HOH HOH . G 4 HOH Y 14 45 45 HOH HOH . G 4 HOH Y 15 47 47 HOH HOH . G 4 HOH Y 16 48 48 HOH HOH . G 4 HOH Y 17 50 50 HOH HOH . G 4 HOH Y 18 52 52 HOH HOH . G 4 HOH Y 19 53 53 HOH HOH . G 4 HOH Y 20 55 55 HOH HOH . G 4 HOH Y 21 56 56 HOH HOH . G 4 HOH Y 22 60 60 HOH HOH . G 4 HOH Y 23 61 61 HOH HOH . G 4 HOH Y 24 344 65 HOH HOH . G 4 HOH Y 25 345 70 HOH HOH . G 4 HOH Y 26 346 74 HOH HOH . G 4 HOH Y 27 347 75 HOH HOH . G 4 HOH Y 28 348 76 HOH HOH . G 4 HOH Y 29 349 79 HOH HOH . G 4 HOH Y 30 350 88 HOH HOH . G 4 HOH Y 31 351 89 HOH HOH . G 4 HOH Y 32 352 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . D 2 51.072 3.024 -0.624 1 59.88 ? FE1 SF4 400 Y 1 HETATM 2 FE FE2 SF4 . . . D 2 52.461 5.011 0.48 1 57.97 ? FE2 SF4 400 Y 1 HETATM 3 FE FE3 SF4 . . . D 2 52.534 2.456 1.609 1 62.12 ? FE3 SF4 400 Y 1 HETATM 4 FE FE4 SF4 . . . D 2 53.824 2.975 -0.786 1 61.07 ? FE4 SF4 400 Y 1 HETATM 5 S S1 SF4 . . . D 2 54.324 3.898 1.263 1 54.95 ? S1 SF4 400 Y 1 HETATM 6 S S2 SF4 . . . D 2 52.403 1.19 -0.296 1 54.73 ? S2 SF4 400 Y 1 HETATM 7 S S3 SF4 . . . D 2 52.443 4.501 -1.772 1 60.1 ? S3 SF4 400 Y 1 HETATM 8 S S4 SF4 . . . D 2 50.725 3.909 1.487 1 61.02 ? S4 SF4 400 Y 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #