data_3N5P # _model_server_result.job_id N5RWFXDMThJ-5lG64JvrWw _model_server_result.datetime_utc '2024-11-23 12:42:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n5p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":900}' # _entry.id 3N5P # _exptl.entry_id 3N5P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3N5P _cell.length_a 60.044 _cell.length_b 106.099 _cell.length_c 158.602 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N5P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 J N N ? 8 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 39 A GLU 77 1_555 S ZN ZN . B ZN 1 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc2 A OE2 GLU 39 A GLU 77 1_555 S ZN ZN . B ZN 1 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc3 A SG CYS 58 A CYS 96 1_555 J ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc4 A SG CYS 63 A CYS 101 1_555 J ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc5 A SG CYS 148 A CYS 186 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc6 J ZN ZN . A ZN 900 1_555 B SG CYS 58 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc7 J ZN ZN . A ZN 900 1_555 B SG CYS 63 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc8 S ZN ZN . B ZN 1 1_555 B OD2 ASP 333 B ASP 371 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.078 ? metalc ? metalc9 S ZN ZN . B ZN 1 1_555 U O HOH . B HOH 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc10 B SG CYS 148 B CYS 186 1_555 K FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3N5P _atom_sites.fract_transf_matrix[1][1] 0.016654 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009425 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006305 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 ACT A 1 850 850 ACT ACT . E 3 ACT A 1 860 860 ACT ACT . F 4 GOL A 1 880 880 GOL GOL . G 5 XFM A 1 800 800 XFM XFM . H 6 CAD A 1 950 950 CAD CAD . I 7 H4B A 1 600 600 H4B H4B . J 8 ZN A 1 900 900 ZN ZN . K 2 HEM B 1 500 500 HEM HEM . L 3 ACT B 1 850 850 ACT ACT . M 3 ACT B 1 860 860 ACT ACT . N 4 GOL B 1 880 880 GOL GOL . O 6 CAD B 1 950 950 CAD CAD . P 7 H4B B 1 600 600 H4B H4B . Q 5 XFM B 1 800 800 XFM XFM . R 4 GOL B 1 890 890 GOL GOL . S 8 ZN B 1 1 1 ZN ZN . T 9 HOH A 1 1001 1001 HOH HOH . T 9 HOH A 2 1002 1002 HOH HOH . T 9 HOH A 3 1003 1003 HOH HOH . T 9 HOH A 4 1004 1004 HOH HOH . T 9 HOH A 5 1005 1005 HOH HOH . T 9 HOH A 6 1006 1006 HOH HOH . T 9 HOH A 7 1007 1007 HOH HOH . T 9 HOH A 8 1008 1008 HOH HOH . T 9 HOH A 9 1009 1009 HOH HOH . T 9 HOH A 10 1010 1010 HOH HOH . T 9 HOH A 11 1011 1011 HOH HOH . T 9 HOH A 12 1012 1012 HOH HOH . T 9 HOH A 13 1013 1013 HOH HOH . T 9 HOH A 14 1014 1014 HOH HOH . T 9 HOH A 15 1015 1015 HOH HOH . T 9 HOH A 16 1016 1016 HOH HOH . T 9 HOH A 17 1017 1017 HOH HOH . T 9 HOH A 18 1018 1018 HOH HOH . T 9 HOH A 19 1019 1019 HOH HOH . T 9 HOH A 20 1020 1020 HOH HOH . T 9 HOH A 21 1021 1021 HOH HOH . T 9 HOH A 22 1022 1022 HOH HOH . T 9 HOH A 23 1023 1023 HOH HOH . T 9 HOH A 24 1024 1024 HOH HOH . T 9 HOH A 25 1025 1025 HOH HOH . T 9 HOH A 26 1026 1026 HOH HOH . T 9 HOH A 27 1027 1027 HOH HOH . T 9 HOH A 28 1028 1028 HOH HOH . T 9 HOH A 29 1029 1029 HOH HOH . T 9 HOH A 30 1030 1030 HOH HOH . T 9 HOH A 31 1031 1031 HOH HOH . T 9 HOH A 32 1032 1032 HOH HOH . T 9 HOH A 33 1033 1033 HOH HOH . T 9 HOH A 34 1034 1034 HOH HOH . T 9 HOH A 35 1035 1035 HOH HOH . T 9 HOH A 36 1036 1036 HOH HOH . T 9 HOH A 37 1037 1037 HOH HOH . T 9 HOH A 38 1038 1038 HOH HOH . T 9 HOH A 39 1039 1039 HOH HOH . T 9 HOH A 40 1040 1040 HOH HOH . T 9 HOH A 41 1041 1041 HOH HOH . T 9 HOH A 42 1042 1042 HOH HOH . T 9 HOH A 43 1043 1043 HOH HOH . T 9 HOH A 44 1044 1044 HOH HOH . T 9 HOH A 45 1045 1045 HOH HOH . T 9 HOH A 46 1046 1046 HOH HOH . T 9 HOH A 47 1047 1047 HOH HOH . T 9 HOH A 48 1048 1048 HOH HOH . T 9 HOH A 49 1049 1049 HOH HOH . T 9 HOH A 50 1050 1050 HOH HOH . T 9 HOH A 51 1051 1051 HOH HOH . T 9 HOH A 52 1052 1052 HOH HOH . T 9 HOH A 53 1053 1053 HOH HOH . T 9 HOH A 54 1054 1054 HOH HOH . T 9 HOH A 55 1055 1055 HOH HOH . T 9 HOH A 56 1056 1056 HOH HOH . T 9 HOH A 57 1057 1057 HOH HOH . T 9 HOH A 58 1058 1058 HOH HOH . T 9 HOH A 59 1059 1059 HOH HOH . T 9 HOH A 60 1060 1060 HOH HOH . T 9 HOH A 61 1061 1061 HOH HOH . T 9 HOH A 62 1062 1062 HOH HOH . T 9 HOH A 63 1063 1063 HOH HOH . T 9 HOH A 64 1064 1064 HOH HOH . T 9 HOH A 65 1065 1065 HOH HOH . U 9 HOH B 1 1066 1066 HOH HOH . U 9 HOH B 2 1067 1067 HOH HOH . U 9 HOH B 3 1068 1068 HOH HOH . U 9 HOH B 4 1069 1069 HOH HOH . U 9 HOH B 5 1070 1070 HOH HOH . U 9 HOH B 6 1071 1071 HOH HOH . U 9 HOH B 7 1072 1072 HOH HOH . U 9 HOH B 8 1073 1073 HOH HOH . U 9 HOH B 9 1074 1074 HOH HOH . U 9 HOH B 10 1075 1075 HOH HOH . U 9 HOH B 11 1076 1076 HOH HOH . U 9 HOH B 12 1077 1077 HOH HOH . U 9 HOH B 13 1078 1078 HOH HOH . U 9 HOH B 14 1079 1079 HOH HOH . U 9 HOH B 15 1080 1080 HOH HOH . U 9 HOH B 16 1081 1081 HOH HOH . U 9 HOH B 17 1082 1082 HOH HOH . U 9 HOH B 18 1083 1083 HOH HOH . U 9 HOH B 19 1084 1084 HOH HOH . U 9 HOH B 20 1085 1085 HOH HOH . U 9 HOH B 21 1086 1086 HOH HOH . U 9 HOH B 22 1087 1087 HOH HOH . U 9 HOH B 23 1088 1088 HOH HOH . U 9 HOH B 24 1089 1089 HOH HOH . U 9 HOH B 25 1090 1090 HOH HOH . U 9 HOH B 26 1091 1091 HOH HOH . U 9 HOH B 27 1092 1092 HOH HOH . U 9 HOH B 28 1093 1093 HOH HOH . U 9 HOH B 29 1094 1094 HOH HOH . U 9 HOH B 30 1095 1095 HOH HOH . U 9 HOH B 31 1096 1096 HOH HOH . U 9 HOH B 32 1097 1097 HOH HOH . U 9 HOH B 33 1098 1098 HOH HOH . U 9 HOH B 34 1099 1099 HOH HOH . U 9 HOH B 35 1100 1100 HOH HOH . U 9 HOH B 36 1101 1101 HOH HOH . U 9 HOH B 37 1102 1102 HOH HOH . U 9 HOH B 38 1103 1103 HOH HOH . U 9 HOH B 39 1104 1104 HOH HOH . U 9 HOH B 40 1105 1105 HOH HOH . U 9 HOH B 41 1106 1106 HOH HOH . U 9 HOH B 42 1107 1107 HOH HOH . U 9 HOH B 43 1108 1108 HOH HOH . U 9 HOH B 44 1109 1109 HOH HOH . U 9 HOH B 45 1110 1110 HOH HOH . U 9 HOH B 46 1111 1111 HOH HOH . U 9 HOH B 47 1112 1112 HOH HOH . U 9 HOH B 48 1113 1113 HOH HOH . U 9 HOH B 49 1114 1114 HOH HOH . U 9 HOH B 50 1115 1115 HOH HOH . U 9 HOH B 51 1116 1116 HOH HOH . U 9 HOH B 52 1117 1117 HOH HOH . U 9 HOH B 53 1118 1118 HOH HOH . U 9 HOH B 54 1119 1119 HOH HOH . U 9 HOH B 55 1120 1120 HOH HOH . U 9 HOH B 56 1121 1121 HOH HOH . U 9 HOH B 57 1122 1122 HOH HOH . U 9 HOH B 58 1123 1123 HOH HOH . U 9 HOH B 59 1124 1124 HOH HOH . U 9 HOH B 60 1125 1125 HOH HOH . U 9 HOH B 61 1126 1126 HOH HOH . U 9 HOH B 62 1127 1127 HOH HOH . U 9 HOH B 63 1128 1128 HOH HOH . U 9 HOH B 64 1129 1129 HOH HOH . U 9 HOH B 65 1130 1130 HOH HOH . U 9 HOH B 66 1131 1131 HOH HOH . U 9 HOH B 67 1132 1132 HOH HOH . U 9 HOH B 68 1133 1133 HOH HOH . U 9 HOH B 69 1134 1134 HOH HOH . U 9 HOH B 70 1135 1135 HOH HOH . U 9 HOH B 71 1136 1136 HOH HOH . U 9 HOH B 72 1137 1137 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 8 _atom_site.Cartn_x 16.876 _atom_site.Cartn_y 0.726 _atom_site.Cartn_z 50.949 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 900 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #