data_3N5Q # _model_server_result.job_id Iqx3zVDIS9vSrPyPV1vxhA _model_server_result.datetime_utc '2024-11-05 06:49:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n5q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":800}' # _entry.id 3N5Q # _exptl.entry_id 3N5Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 361.483 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "6,6'-[(5-aminobenzene-1,3-diyl)diethane-2,1-diyl]bis(4-methylpyridin-2-amine)" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3N5Q _cell.length_a 57.847 _cell.length_b 107.09 _cell.length_c 157.252 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N5Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 58 A CYS 96 1_555 G ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc2 A SG CYS 63 A CYS 101 1_555 G ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc3 A SG CYS 148 A CYS 186 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc4 G ZN ZN . A ZN 900 1_555 B SG CYS 58 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc5 G ZN ZN . A ZN 900 1_555 B SG CYS 63 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc6 B SG CYS 148 B CYS 186 1_555 H FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? # _chem_comp.formula 'C22 H27 N5' _chem_comp.formula_weight 361.483 _chem_comp.id XFN _chem_comp.mon_nstd_flag . _chem_comp.name "6,6'-[(5-aminobenzene-1,3-diyl)diethane-2,1-diyl]bis(4-methylpyridin-2-amine)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C06 C01 XFN doub 502 n y C01 C02 XFN sing 503 n y C01 H01 XFN sing 504 n n C02 C03 XFN doub 505 n y C02 N02 XFN sing 506 n n N02 HN02 XFN sing 507 n n N02 HN0A XFN sing 508 n n C04 C03 XFN sing 509 n y C03 H03 XFN sing 510 n n C05 C04 XFN doub 511 n y C04 C07 XFN sing 512 n n C06 C05 XFN sing 513 n y C05 H05 XFN sing 514 n n C08 C06 XFN sing 515 n n C34 C07 XFN sing 516 n n C07 H07 XFN sing 517 n n C07 H07A XFN sing 518 n n C09 C08 XFN sing 519 n n C08 H08 XFN sing 520 n n C08 H08A XFN sing 521 n n C09 C13 XFN sing 522 n n C09 H09 XFN sing 523 n n C09 H09A XFN sing 524 n n N12 C11 XFN doub 525 n y N17 C11 XFN sing 526 n n C11 C16 XFN sing 527 n y N12 C13 XFN sing 528 n y C13 C14 XFN doub 529 n y C14 C15 XFN sing 530 n y C14 H14 XFN sing 531 n n C16 C15 XFN doub 532 n y C15 C18 XFN sing 533 n n C16 H16 XFN sing 534 n n N17 HN17 XFN sing 535 n n N17 HN1A XFN sing 536 n n C18 H18 XFN sing 537 n n C18 H18A XFN sing 538 n n C18 H18B XFN sing 539 n n C34 C35 XFN sing 540 n n C34 H34 XFN sing 541 n n C34 H34A XFN sing 542 n n N40 C35 XFN doub 543 n y C35 C36 XFN sing 544 n y C36 C37 XFN doub 545 n y C36 H36 XFN sing 546 n n C38 C37 XFN sing 547 n y C37 C42 XFN sing 548 n n C39 C38 XFN doub 549 n y C38 H38 XFN sing 550 n n N40 C39 XFN sing 551 n y N41 C39 XFN sing 552 n n N41 HN41 XFN sing 553 n n N41 HN4A XFN sing 554 n n C42 H42 XFN sing 555 n n C42 H42A XFN sing 556 n n C42 H42B XFN sing 557 n n # _atom_sites.entry_id 3N5Q _atom_sites.fract_transf_matrix[1][1] 0.017287 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009338 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006359 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 CAD A 1 950 950 CAD CAD . E 4 H4B A 1 600 600 H4B H4B . F 5 XFN A 1 800 800 XFN XFN . G 6 ZN A 1 900 900 ZN ZN . H 2 HEM B 1 500 500 HEM HEM . I 3 CAD B 1 950 950 CAD CAD . J 4 H4B B 1 600 600 H4B H4B . K 5 XFN B 1 800 800 XFN XFN . L 7 HOH A 1 1001 1001 HOH HOH . L 7 HOH A 2 1002 1002 HOH HOH . L 7 HOH A 3 1003 1003 HOH HOH . L 7 HOH A 4 1004 1004 HOH HOH . L 7 HOH A 5 1005 1005 HOH HOH . L 7 HOH A 6 1006 1006 HOH HOH . L 7 HOH A 7 1007 1007 HOH HOH . L 7 HOH A 8 1008 1008 HOH HOH . L 7 HOH A 9 1009 1009 HOH HOH . L 7 HOH A 10 1010 1010 HOH HOH . L 7 HOH A 11 1011 1011 HOH HOH . L 7 HOH A 12 1012 1012 HOH HOH . L 7 HOH A 13 1013 1013 HOH HOH . L 7 HOH A 14 1014 1014 HOH HOH . M 7 HOH B 1 1015 1015 HOH HOH . M 7 HOH B 2 1016 1016 HOH HOH . M 7 HOH B 3 1017 1017 HOH HOH . M 7 HOH B 4 1018 1018 HOH HOH . M 7 HOH B 5 1019 1019 HOH HOH . M 7 HOH B 6 1020 1020 HOH HOH . M 7 HOH B 7 1021 1021 HOH HOH . M 7 HOH B 8 1022 1022 HOH HOH . M 7 HOH B 9 1023 1023 HOH HOH . M 7 HOH B 10 1024 1024 HOH HOH . M 7 HOH B 11 1025 1025 HOH HOH . M 7 HOH B 12 1026 1026 HOH HOH . M 7 HOH B 13 1027 1027 HOH HOH . M 7 HOH B 14 1028 1028 HOH HOH . M 7 HOH B 15 1029 1029 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 XFN . . . F 5 13.514 14.692 35.344 1 78.89 ? C01 XFN 800 A 1 HETATM 2 C C02 XFN . . . F 5 13.424 14.827 33.976 1 76.48 ? C02 XFN 800 A 1 HETATM 3 N N02 XFN . . . F 5 14.554 15.012 33.258 1 76.58 ? N02 XFN 800 A 1 HETATM 4 C C03 XFN . . . F 5 12.18 14.762 33.37 1 75.02 ? C03 XFN 800 A 1 HETATM 5 C C04 XFN . . . F 5 11.023 14.559 34.125 1 73.8 ? C04 XFN 800 A 1 HETATM 6 C C05 XFN . . . F 5 11.133 14.436 35.52 1 76.99 ? C05 XFN 800 A 1 HETATM 7 C C06 XFN . . . F 5 12.386 14.511 36.136 1 80.87 ? C06 XFN 800 A 1 HETATM 8 C C07 XFN . . . F 5 9.686 14.492 33.391 1 69.83 ? C07 XFN 800 A 1 HETATM 9 C C08 XFN . . . F 5 12.566 14.394 37.644 1 86.94 ? C08 XFN 800 A 1 HETATM 10 C C09 XFN . . . F 5 13.313 15.596 38.263 1 94.02 ? C09 XFN 800 A 1 HETATM 11 C C11 XFN . . . F 5 16.936 14.587 38.108 1 102.72 ? C11 XFN 800 A 1 HETATM 12 N N12 XFN . . . F 5 15.614 14.634 38.426 1 101.16 ? N12 XFN 800 A 1 HETATM 13 C C13 XFN . . . F 5 14.797 15.58 37.889 1 99.41 ? C13 XFN 800 A 1 HETATM 14 C C14 XFN . . . F 5 15.345 16.516 36.98 1 101.56 ? C14 XFN 800 A 1 HETATM 15 C C15 XFN . . . F 5 16.71 16.472 36.635 1 102.77 ? C15 XFN 800 A 1 HETATM 16 C C16 XFN . . . F 5 17.514 15.493 37.212 1 102.65 ? C16 XFN 800 A 1 HETATM 17 N N17 XFN . . . F 5 17.711 13.638 38.681 1 103.99 ? N17 XFN 800 A 1 HETATM 18 C C18 XFN . . . F 5 17.322 17.464 35.67 1 102.94 ? C18 XFN 800 A 1 HETATM 19 C C34 XFN . . . F 5 9.043 13.145 33.664 1 64.73 ? C34 XFN 800 A 1 HETATM 20 C C35 XFN . . . F 5 8.212 12.468 32.597 1 61.99 ? C35 XFN 800 A 1 HETATM 21 C C36 XFN . . . F 5 8.797 11.788 31.525 1 59.85 ? C36 XFN 800 A 1 HETATM 22 C C37 XFN . . . F 5 7.99 11.129 30.598 1 57.72 ? C37 XFN 800 A 1 HETATM 23 C C38 XFN . . . F 5 6.61 11.141 30.755 1 58.69 ? C38 XFN 800 A 1 HETATM 24 C C39 XFN . . . F 5 6.054 11.82 31.842 1 60.89 ? C39 XFN 800 A 1 HETATM 25 N N40 XFN . . . F 5 6.864 12.455 32.735 1 61.79 ? N40 XFN 800 A 1 HETATM 26 N N41 XFN . . . F 5 4.704 11.858 32.016 1 60.4 ? N41 XFN 800 A 1 HETATM 27 C C42 XFN . . . F 5 8.604 10.425 29.428 1 55.68 ? C42 XFN 800 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #