data_3N5R
#
_model_server_result.job_id            aHUjVvMeCpzosjhibPdIQA 
_model_server_result.datetime_utc      '2024-11-23 11:35:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3n5r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":800}' 
#
_entry.id    3N5R 
#
_exptl.entry_id    3N5R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              346.469 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-(2-{3-[2-(2-amino-6-methylpyridin-4-yl)ethyl]phenyl}ethyl)-4-methylpyridin-2-amine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3N5R 
_cell.length_a            57.928 
_cell.length_b            106.708 
_cell.length_c            156.901 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3N5R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 58 A CYS 96 1_555 J ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc2 A SG CYS 63 A CYS 101 1_555 J ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc3 A SG CYS 148 A CYS 186 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc4 J ZN ZN . A ZN 900 1_555 B SG CYS 58 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc5 J ZN ZN . A ZN 900 1_555 B SG CYS 63 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc6 B SG CYS 148 B CYS 186 1_555 K FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
#
_chem_comp.formula           'C22 H26 N4' 
_chem_comp.formula_weight    346.469 
_chem_comp.id                XFH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-(2-{3-[2-(2-amino-6-methylpyridin-4-yl)ethyl]phenyl}ethyl)-4-methylpyridin-2-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C02 N01 XFH doub 521 n y 
C06 N01 XFH sing 522 n y 
C03 C02 XFH sing 523 n y 
C02 N02 XFH sing 524 n n 
N02 HN02 XFH sing 525 n n 
N02 HN0A XFH sing 526 n n 
C04 C03 XFH doub 527 n y 
C03 H03 XFH sing 528 n n 
C07 C04 XFH sing 529 n n 
C04 C05 XFH sing 530 n y 
C05 C06 XFH doub 531 n y 
C05 H05 XFH sing 532 n n 
C06 C08 XFH sing 533 n n 
C07 H07 XFH sing 534 n n 
C07 H07A XFH sing 535 n n 
C07 H07B XFH sing 536 n n 
C08 C09 XFH sing 537 n n 
C08 H08 XFH sing 538 n n 
C08 H08A XFH sing 539 n n 
C09 C13 XFH sing 540 n n 
C09 H09 XFH sing 541 n n 
C09 H09A XFH sing 542 n n 
C12 C11 XFH doub 543 n y 
C11 C16 XFH sing 544 n y 
C11 H11 XFH sing 545 n n 
C13 C12 XFH sing 546 n y 
C12 H12 XFH sing 547 n n 
C13 C14 XFH doub 548 n y 
C14 C15 XFH sing 549 n y 
C14 H14 XFH sing 550 n n 
C15 C17 XFH sing 551 n n 
C15 C16 XFH doub 552 n y 
C16 H16 XFH sing 553 n n 
C17 C18 XFH sing 554 n n 
C17 H17 XFH sing 555 n n 
C17 H17A XFH sing 556 n n 
C26 C18 XFH sing 557 n n 
C18 H18 XFH sing 558 n n 
C18 H18A XFH sing 559 n n 
C26 C21 XFH doub 560 n y 
C22 C21 XFH sing 561 n y 
C21 H21 XFH sing 562 n n 
N23 C22 XFH doub 563 n y 
C22 N22 XFH sing 564 n n 
N22 HN22 XFH sing 565 n n 
N22 HN2A XFH sing 566 n n 
C24 N23 XFH sing 567 n y 
C27 C24 XFH sing 568 n n 
C24 C25 XFH doub 569 n y 
C25 C26 XFH sing 570 n y 
C25 H25 XFH sing 571 n n 
C27 H27 XFH sing 572 n n 
C27 H27A XFH sing 573 n n 
C27 H27B XFH sing 574 n n 
#
_atom_sites.entry_id                     3N5R 
_atom_sites.fract_transf_matrix[1][1]    0.017263 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009371 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006373 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 500 500 HEM HEM . 
D 3 ACT A 1 850 850 ACT ACT . 
E 3 ACT A 1 860 860 ACT ACT . 
F 4 GOL A 1 880 880 GOL GOL . 
G 5 CAD A 1 950 950 CAD CAD . 
H 6 H4B A 1 600 600 H4B H4B . 
I 7 XFH A 1 800 800 XFH XFH . 
J 8 ZN A 1 900 900 ZN ZN . 
K 2 HEM B 1 500 500 HEM HEM . 
L 3 ACT B 1 860 860 ACT ACT . 
M 4 GOL B 1 880 880 GOL GOL . 
N 5 CAD B 1 950 950 CAD CAD . 
O 6 H4B B 1 600 600 H4B H4B . 
P 7 XFH B 1 800 800 XFH XFH . 
Q 9 HOH A 1 1001 1001 HOH HOH . 
Q 9 HOH A 2 1002 1002 HOH HOH . 
Q 9 HOH A 3 1003 1003 HOH HOH . 
Q 9 HOH A 4 1004 1004 HOH HOH . 
Q 9 HOH A 5 1005 1005 HOH HOH . 
Q 9 HOH A 6 1006 1006 HOH HOH . 
Q 9 HOH A 7 1007 1007 HOH HOH . 
Q 9 HOH A 8 1008 1008 HOH HOH . 
Q 9 HOH A 9 1009 1009 HOH HOH . 
Q 9 HOH A 10 1010 1010 HOH HOH . 
Q 9 HOH A 11 1011 1011 HOH HOH . 
Q 9 HOH A 12 1012 1012 HOH HOH . 
Q 9 HOH A 13 1013 1013 HOH HOH . 
Q 9 HOH A 14 1014 1014 HOH HOH . 
Q 9 HOH A 15 1015 1015 HOH HOH . 
Q 9 HOH A 16 1016 1016 HOH HOH . 
Q 9 HOH A 17 1017 1017 HOH HOH . 
Q 9 HOH A 18 1018 1018 HOH HOH . 
Q 9 HOH A 19 1019 1019 HOH HOH . 
Q 9 HOH A 20 1020 1020 HOH HOH . 
Q 9 HOH A 21 1021 1021 HOH HOH . 
Q 9 HOH A 22 1022 1022 HOH HOH . 
Q 9 HOH A 23 1023 1023 HOH HOH . 
Q 9 HOH A 24 1024 1024 HOH HOH . 
Q 9 HOH A 25 1025 1025 HOH HOH . 
Q 9 HOH A 26 1026 1026 HOH HOH . 
Q 9 HOH A 27 1027 1027 HOH HOH . 
Q 9 HOH A 28 1028 1028 HOH HOH . 
Q 9 HOH A 29 1029 1029 HOH HOH . 
Q 9 HOH A 30 1030 1030 HOH HOH . 
Q 9 HOH A 31 1031 1031 HOH HOH . 
Q 9 HOH A 32 1032 1032 HOH HOH . 
Q 9 HOH A 33 1033 1033 HOH HOH . 
Q 9 HOH A 34 1034 1034 HOH HOH . 
Q 9 HOH A 35 1035 1035 HOH HOH . 
Q 9 HOH A 36 1036 1036 HOH HOH . 
Q 9 HOH A 37 1037 1037 HOH HOH . 
Q 9 HOH A 38 1038 1038 HOH HOH . 
Q 9 HOH A 39 1039 1039 HOH HOH . 
Q 9 HOH A 40 1040 1040 HOH HOH . 
Q 9 HOH A 41 1041 1041 HOH HOH . 
Q 9 HOH A 42 1042 1042 HOH HOH . 
Q 9 HOH A 43 1043 1043 HOH HOH . 
Q 9 HOH A 44 1044 1044 HOH HOH . 
Q 9 HOH A 45 1045 1045 HOH HOH . 
Q 9 HOH A 46 1046 1046 HOH HOH . 
Q 9 HOH A 47 1047 1047 HOH HOH . 
Q 9 HOH A 48 1048 1048 HOH HOH . 
Q 9 HOH A 49 1049 1049 HOH HOH . 
Q 9 HOH A 50 1050 1050 HOH HOH . 
Q 9 HOH A 51 1051 1051 HOH HOH . 
Q 9 HOH A 52 1052 1052 HOH HOH . 
Q 9 HOH A 53 1053 1053 HOH HOH . 
Q 9 HOH A 54 1054 1054 HOH HOH . 
Q 9 HOH A 55 1055 1055 HOH HOH . 
Q 9 HOH A 56 1056 1056 HOH HOH . 
R 9 HOH B 1 1057 1057 HOH HOH . 
R 9 HOH B 2 1058 1058 HOH HOH . 
R 9 HOH B 3 1059 1059 HOH HOH . 
R 9 HOH B 4 1060 1060 HOH HOH . 
R 9 HOH B 5 1061 1061 HOH HOH . 
R 9 HOH B 6 1062 1062 HOH HOH . 
R 9 HOH B 7 1063 1063 HOH HOH . 
R 9 HOH B 8 1064 1064 HOH HOH . 
R 9 HOH B 9 1065 1065 HOH HOH . 
R 9 HOH B 10 1066 1066 HOH HOH . 
R 9 HOH B 11 1067 1067 HOH HOH . 
R 9 HOH B 12 1068 1068 HOH HOH . 
R 9 HOH B 13 1069 1069 HOH HOH . 
R 9 HOH B 14 1070 1070 HOH HOH . 
R 9 HOH B 15 1071 1071 HOH HOH . 
R 9 HOH B 16 1072 1072 HOH HOH . 
R 9 HOH B 17 1073 1073 HOH HOH . 
R 9 HOH B 18 1074 1074 HOH HOH . 
R 9 HOH B 19 1075 1075 HOH HOH . 
R 9 HOH B 20 1076 1076 HOH HOH . 
R 9 HOH B 21 1077 1077 HOH HOH . 
R 9 HOH B 22 1078 1078 HOH HOH . 
R 9 HOH B 23 1079 1079 HOH HOH . 
R 9 HOH B 24 1080 1080 HOH HOH . 
R 9 HOH B 25 1081 1081 HOH HOH . 
R 9 HOH B 26 1082 1082 HOH HOH . 
R 9 HOH B 27 1083 1083 HOH HOH . 
R 9 HOH B 28 1084 1084 HOH HOH . 
R 9 HOH B 29 1085 1085 HOH HOH . 
R 9 HOH B 30 1086 1086 HOH HOH . 
R 9 HOH B 31 1087 1087 HOH HOH . 
R 9 HOH B 32 1088 1088 HOH HOH . 
R 9 HOH B 33 1089 1089 HOH HOH . 
R 9 HOH B 34 1090 1090 HOH HOH . 
R 9 HOH B 35 1091 1091 HOH HOH . 
R 9 HOH B 36 1092 1092 HOH HOH . 
R 9 HOH B 37 1093 1093 HOH HOH . 
R 9 HOH B 38 1094 1094 HOH HOH . 
R 9 HOH B 39 1095 1095 HOH HOH . 
R 9 HOH B 40 1096 1096 HOH HOH . 
R 9 HOH B 41 1097 1097 HOH HOH . 
R 9 HOH B 42 1098 1098 HOH HOH . 
R 9 HOH B 43 1099 1099 HOH HOH . 
R 9 HOH B 44 1100 1100 HOH HOH . 
R 9 HOH B 45 1101 1101 HOH HOH . 
R 9 HOH B 46 1102 1102 HOH HOH . 
R 9 HOH B 47 1103 1103 HOH HOH . 
R 9 HOH B 48 1104 1104 HOH HOH . 
R 9 HOH B 49 1105 1105 HOH HOH . 
R 9 HOH B 50 1106 1106 HOH HOH . 
R 9 HOH B 51 1107 1107 HOH HOH . 
R 9 HOH B 52 1108 1108 HOH HOH . 
R 9 HOH B 53 1109 1109 HOH HOH . 
R 9 HOH B 54 1110 1110 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N01 XFH . . . I 7 6.88 12.78 32.368 1 49.69 ? N01 XFH 800 A 1 
HETATM 2 C C02 XFH . . . I 7 6.042 12.012 31.602 1 48.66 ? C02 XFH 800 A 1 
HETATM 3 N N02 XFH . . . I 7 4.706 12.005 31.863 1 47.36 ? N02 XFH 800 A 1 
HETATM 4 C C03 XFH . . . I 7 6.536 11.228 30.551 1 47.33 ? C03 XFH 800 A 1 
HETATM 5 C C04 XFH . . . I 7 7.901 11.251 30.287 1 48.1 ? C04 XFH 800 A 1 
HETATM 6 C C05 XFH . . . I 7 8.744 12.036 31.077 1 50.27 ? C05 XFH 800 A 1 
HETATM 7 C C06 XFH . . . I 7 8.228 12.802 32.138 1 53.24 ? C06 XFH 800 A 1 
HETATM 8 C C07 XFH . . . I 7 8.484 10.441 29.166 1 44.94 ? C07 XFH 800 A 1 
HETATM 9 C C08 XFH . . . I 7 9.171 13.618 33.024 1 55.99 ? C08 XFH 800 A 1 
HETATM 10 C C09 XFH . . . I 7 10.16 12.657 33.736 1 62.45 ? C09 XFH 800 A 1 
HETATM 11 C C11 XFH . . . I 7 12.547 15.41 34.873 1 75.93 ? C11 XFH 800 A 1 
HETATM 12 C C12 XFH . . . I 7 11.412 14.68 34.486 1 72.65 ? C12 XFH 800 A 1 
HETATM 13 C C13 XFH . . . I 7 11.469 13.321 34.159 1 68.64 ? C13 XFH 800 A 1 
HETATM 14 C C14 XFH . . . I 7 12.724 12.656 34.234 1 72.09 ? C14 XFH 800 A 1 
HETATM 15 C C15 XFH . . . I 7 13.879 13.386 34.626 1 75.18 ? C15 XFH 800 A 1 
HETATM 16 C C16 XFH . . . I 7 13.775 14.75 34.938 1 77.11 ? C16 XFH 800 A 1 
HETATM 17 C C17 XFH . . . I 7 15.271 12.803 34.754 1 76.76 ? C17 XFH 800 A 1 
HETATM 18 C C18 XFH . . . I 7 15.922 13.37 36.032 1 80.29 ? C18 XFH 800 A 1 
HETATM 19 C C21 XFH . . . I 7 17.894 14.744 36.829 1 83.03 ? C21 XFH 800 A 1 
HETATM 20 C C22 XFH . . . I 7 19.233 15.154 36.704 1 84.93 ? C22 XFH 800 A 1 
HETATM 21 N N22 XFH . . . I 7 19.783 16.043 37.578 1 86.61 ? N22 XFH 800 A 1 
HETATM 22 N N23 XFH . . . I 7 20.024 14.668 35.713 1 84.02 ? N23 XFH 800 A 1 
HETATM 23 C C24 XFH . . . I 7 19.544 13.779 34.809 1 83.76 ? C24 XFH 800 A 1 
HETATM 24 C C25 XFH . . . I 7 18.212 13.354 34.896 1 82.99 ? C25 XFH 800 A 1 
HETATM 25 C C26 XFH . . . I 7 17.371 13.832 35.909 1 81.9 ? C26 XFH 800 A 1 
HETATM 26 C C27 XFH . . . I 7 20.456 13.258 33.718 1 82.93 ? C27 XFH 800 A 1 
#
_model_server_stats.io_time_ms              82 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#