data_3N5R # _model_server_result.job_id nNUfnuorzxIpmL5Q2fitVQ _model_server_result.datetime_utc '2024-11-04 22:57:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n5r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":880}' # _entry.id 3N5R # _exptl.entry_id 3N5R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3N5R _cell.length_a 57.928 _cell.length_b 106.708 _cell.length_c 156.901 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N5R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 58 A CYS 96 1_555 J ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc2 A SG CYS 63 A CYS 101 1_555 J ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc3 A SG CYS 148 A CYS 186 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc4 J ZN ZN . A ZN 900 1_555 B SG CYS 58 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc5 J ZN ZN . A ZN 900 1_555 B SG CYS 63 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc6 B SG CYS 148 B CYS 186 1_555 K FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 146 n n C1 C2 GOL sing 147 n n C1 H11 GOL sing 148 n n C1 H12 GOL sing 149 n n O1 HO1 GOL sing 150 n n C2 O2 GOL sing 151 n n C2 C3 GOL sing 152 n n C2 H2 GOL sing 153 n n O2 HO2 GOL sing 154 n n C3 O3 GOL sing 155 n n C3 H31 GOL sing 156 n n C3 H32 GOL sing 157 n n O3 HO3 GOL sing 158 n n # _atom_sites.entry_id 3N5R _atom_sites.fract_transf_matrix[1][1] 0.017263 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009371 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006373 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 ACT A 1 850 850 ACT ACT . E 3 ACT A 1 860 860 ACT ACT . F 4 GOL A 1 880 880 GOL GOL . G 5 CAD A 1 950 950 CAD CAD . H 6 H4B A 1 600 600 H4B H4B . I 7 XFH A 1 800 800 XFH XFH . J 8 ZN A 1 900 900 ZN ZN . K 2 HEM B 1 500 500 HEM HEM . L 3 ACT B 1 860 860 ACT ACT . M 4 GOL B 1 880 880 GOL GOL . N 5 CAD B 1 950 950 CAD CAD . O 6 H4B B 1 600 600 H4B H4B . P 7 XFH B 1 800 800 XFH XFH . Q 9 HOH A 1 1001 1001 HOH HOH . Q 9 HOH A 2 1002 1002 HOH HOH . Q 9 HOH A 3 1003 1003 HOH HOH . Q 9 HOH A 4 1004 1004 HOH HOH . Q 9 HOH A 5 1005 1005 HOH HOH . Q 9 HOH A 6 1006 1006 HOH HOH . Q 9 HOH A 7 1007 1007 HOH HOH . Q 9 HOH A 8 1008 1008 HOH HOH . Q 9 HOH A 9 1009 1009 HOH HOH . Q 9 HOH A 10 1010 1010 HOH HOH . Q 9 HOH A 11 1011 1011 HOH HOH . Q 9 HOH A 12 1012 1012 HOH HOH . Q 9 HOH A 13 1013 1013 HOH HOH . Q 9 HOH A 14 1014 1014 HOH HOH . Q 9 HOH A 15 1015 1015 HOH HOH . Q 9 HOH A 16 1016 1016 HOH HOH . Q 9 HOH A 17 1017 1017 HOH HOH . Q 9 HOH A 18 1018 1018 HOH HOH . Q 9 HOH A 19 1019 1019 HOH HOH . Q 9 HOH A 20 1020 1020 HOH HOH . Q 9 HOH A 21 1021 1021 HOH HOH . Q 9 HOH A 22 1022 1022 HOH HOH . Q 9 HOH A 23 1023 1023 HOH HOH . Q 9 HOH A 24 1024 1024 HOH HOH . Q 9 HOH A 25 1025 1025 HOH HOH . Q 9 HOH A 26 1026 1026 HOH HOH . Q 9 HOH A 27 1027 1027 HOH HOH . Q 9 HOH A 28 1028 1028 HOH HOH . Q 9 HOH A 29 1029 1029 HOH HOH . Q 9 HOH A 30 1030 1030 HOH HOH . Q 9 HOH A 31 1031 1031 HOH HOH . Q 9 HOH A 32 1032 1032 HOH HOH . Q 9 HOH A 33 1033 1033 HOH HOH . Q 9 HOH A 34 1034 1034 HOH HOH . Q 9 HOH A 35 1035 1035 HOH HOH . Q 9 HOH A 36 1036 1036 HOH HOH . Q 9 HOH A 37 1037 1037 HOH HOH . Q 9 HOH A 38 1038 1038 HOH HOH . Q 9 HOH A 39 1039 1039 HOH HOH . Q 9 HOH A 40 1040 1040 HOH HOH . Q 9 HOH A 41 1041 1041 HOH HOH . Q 9 HOH A 42 1042 1042 HOH HOH . Q 9 HOH A 43 1043 1043 HOH HOH . Q 9 HOH A 44 1044 1044 HOH HOH . Q 9 HOH A 45 1045 1045 HOH HOH . Q 9 HOH A 46 1046 1046 HOH HOH . Q 9 HOH A 47 1047 1047 HOH HOH . Q 9 HOH A 48 1048 1048 HOH HOH . Q 9 HOH A 49 1049 1049 HOH HOH . Q 9 HOH A 50 1050 1050 HOH HOH . Q 9 HOH A 51 1051 1051 HOH HOH . Q 9 HOH A 52 1052 1052 HOH HOH . Q 9 HOH A 53 1053 1053 HOH HOH . Q 9 HOH A 54 1054 1054 HOH HOH . Q 9 HOH A 55 1055 1055 HOH HOH . Q 9 HOH A 56 1056 1056 HOH HOH . R 9 HOH B 1 1057 1057 HOH HOH . R 9 HOH B 2 1058 1058 HOH HOH . R 9 HOH B 3 1059 1059 HOH HOH . R 9 HOH B 4 1060 1060 HOH HOH . R 9 HOH B 5 1061 1061 HOH HOH . R 9 HOH B 6 1062 1062 HOH HOH . R 9 HOH B 7 1063 1063 HOH HOH . R 9 HOH B 8 1064 1064 HOH HOH . R 9 HOH B 9 1065 1065 HOH HOH . R 9 HOH B 10 1066 1066 HOH HOH . R 9 HOH B 11 1067 1067 HOH HOH . R 9 HOH B 12 1068 1068 HOH HOH . R 9 HOH B 13 1069 1069 HOH HOH . R 9 HOH B 14 1070 1070 HOH HOH . R 9 HOH B 15 1071 1071 HOH HOH . R 9 HOH B 16 1072 1072 HOH HOH . R 9 HOH B 17 1073 1073 HOH HOH . R 9 HOH B 18 1074 1074 HOH HOH . R 9 HOH B 19 1075 1075 HOH HOH . R 9 HOH B 20 1076 1076 HOH HOH . R 9 HOH B 21 1077 1077 HOH HOH . R 9 HOH B 22 1078 1078 HOH HOH . R 9 HOH B 23 1079 1079 HOH HOH . R 9 HOH B 24 1080 1080 HOH HOH . R 9 HOH B 25 1081 1081 HOH HOH . R 9 HOH B 26 1082 1082 HOH HOH . R 9 HOH B 27 1083 1083 HOH HOH . R 9 HOH B 28 1084 1084 HOH HOH . R 9 HOH B 29 1085 1085 HOH HOH . R 9 HOH B 30 1086 1086 HOH HOH . R 9 HOH B 31 1087 1087 HOH HOH . R 9 HOH B 32 1088 1088 HOH HOH . R 9 HOH B 33 1089 1089 HOH HOH . R 9 HOH B 34 1090 1090 HOH HOH . R 9 HOH B 35 1091 1091 HOH HOH . R 9 HOH B 36 1092 1092 HOH HOH . R 9 HOH B 37 1093 1093 HOH HOH . R 9 HOH B 38 1094 1094 HOH HOH . R 9 HOH B 39 1095 1095 HOH HOH . R 9 HOH B 40 1096 1096 HOH HOH . R 9 HOH B 41 1097 1097 HOH HOH . R 9 HOH B 42 1098 1098 HOH HOH . R 9 HOH B 43 1099 1099 HOH HOH . R 9 HOH B 44 1100 1100 HOH HOH . R 9 HOH B 45 1101 1101 HOH HOH . R 9 HOH B 46 1102 1102 HOH HOH . R 9 HOH B 47 1103 1103 HOH HOH . R 9 HOH B 48 1104 1104 HOH HOH . R 9 HOH B 49 1105 1105 HOH HOH . R 9 HOH B 50 1106 1106 HOH HOH . R 9 HOH B 51 1107 1107 HOH HOH . R 9 HOH B 52 1108 1108 HOH HOH . R 9 HOH B 53 1109 1109 HOH HOH . R 9 HOH B 54 1110 1110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 13.73 15.735 42.05 1 61.4 ? C1 GOL 880 A 1 HETATM 2 O O1 GOL . . . F 4 13.99 16.135 40.706 1 64.25 ? O1 GOL 880 A 1 HETATM 3 C C2 GOL . . . F 4 12.969 16.814 42.805 1 59.91 ? C2 GOL 880 A 1 HETATM 4 O O2 GOL . . . F 4 11.663 16.88 42.294 1 59.46 ? O2 GOL 880 A 1 HETATM 5 C C3 GOL . . . F 4 13.611 18.164 42.549 1 58.64 ? C3 GOL 880 A 1 HETATM 6 O O3 GOL . . . F 4 12.726 19.16 42.988 1 56.86 ? O3 GOL 880 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #