data_3N5Z # _model_server_result.job_id reMUEQ7jfOP87jIENc9-Vw _model_server_result.datetime_utc '2024-11-23 12:06:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n5z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":760}' # _entry.id 3N5Z # _exptl.entry_id 3N5Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3N5Z _cell.length_a 51.894 _cell.length_b 111.082 _cell.length_c 164.625 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N5Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 G ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc2 A SG CYS 35 A CYS 331 1_555 G ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc3 A SG CYS 119 A CYS 415 1_555 C FE HEM . A HEM 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc4 G ZN ZN . A ZN 900 1_555 B SG CYS 30 B CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc5 G ZN ZN . A ZN 900 1_555 B SG CYS 35 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc6 B SG CYS 119 B CYS 415 1_555 H FE HEM . B HEM 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 135 n y N1 C8A H4B sing 136 n y C2 N2 H4B sing 137 n n C2 N3 H4B sing 138 n y N2 HN21 H4B sing 139 n n N2 HN22 H4B sing 140 n n N3 C4 H4B sing 141 n y N3 HN3 H4B sing 142 n n C4 O4 H4B doub 143 n n C4 C4A H4B sing 144 n y C4A C8A H4B doub 145 n y C4A N5 H4B sing 146 n n C8A N8 H4B sing 147 n n N5 C6 H4B sing 148 n n N5 HN5 H4B sing 149 n n N8 C7 H4B sing 150 n n N8 HN8 H4B sing 151 n n C6 C7 H4B sing 152 n n C6 C9 H4B sing 153 n n C6 H6 H4B sing 154 n n C7 H71 H4B sing 155 n n C7 H72 H4B sing 156 n n C9 O9 H4B sing 157 n n C9 C10 H4B sing 158 n n C9 H9 H4B sing 159 n n O9 HO9 H4B sing 160 n n C10 C11 H4B sing 161 n n C10 O10 H4B sing 162 n n C10 H10 H4B sing 163 n n C11 H111 H4B sing 164 n n C11 H112 H4B sing 165 n n C11 H113 H4B sing 166 n n O10 HO0 H4B sing 167 n n # _atom_sites.entry_id 3N5Z _atom_sites.fract_transf_matrix[1][1] 0.01927 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009002 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006074 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 750 750 HEM HEM . D 3 H4B A 1 760 760 H4B H4B . E 4 XFM A 1 800 800 XFM XFM . F 5 ACT A 1 860 860 ACT ACT . G 6 ZN A 1 900 900 ZN ZN . H 2 HEM B 1 750 750 HEM HEM . I 3 H4B B 1 760 760 H4B H4B . J 5 ACT B 1 860 860 ACT ACT . K 4 XFM B 1 800 800 XFM XFM . L 7 HOH A 1 1001 1001 HOH HOH . L 7 HOH A 2 1002 1002 HOH HOH . L 7 HOH A 3 1003 1003 HOH HOH . L 7 HOH A 4 1004 1004 HOH HOH . L 7 HOH A 5 1005 1005 HOH HOH . L 7 HOH A 6 1006 1006 HOH HOH . L 7 HOH A 7 1007 1007 HOH HOH . L 7 HOH A 8 1008 1008 HOH HOH . L 7 HOH A 9 1009 1009 HOH HOH . L 7 HOH A 10 1010 1010 HOH HOH . L 7 HOH A 11 1011 1011 HOH HOH . L 7 HOH A 12 1012 1012 HOH HOH . L 7 HOH A 13 1013 1013 HOH HOH . L 7 HOH A 14 1014 1014 HOH HOH . L 7 HOH A 15 1015 1015 HOH HOH . L 7 HOH A 16 1016 1016 HOH HOH . L 7 HOH A 17 1017 1017 HOH HOH . L 7 HOH A 18 1018 1018 HOH HOH . L 7 HOH A 19 1019 1019 HOH HOH . L 7 HOH A 20 1020 1020 HOH HOH . L 7 HOH A 21 1021 1021 HOH HOH . L 7 HOH A 22 1022 1022 HOH HOH . L 7 HOH A 23 1023 1023 HOH HOH . L 7 HOH A 24 1024 1024 HOH HOH . L 7 HOH A 25 1025 1025 HOH HOH . L 7 HOH A 26 1026 1026 HOH HOH . L 7 HOH A 27 1027 1027 HOH HOH . L 7 HOH A 28 1028 1028 HOH HOH . L 7 HOH A 29 1029 1029 HOH HOH . L 7 HOH A 30 1030 1030 HOH HOH . L 7 HOH A 31 1031 1031 HOH HOH . L 7 HOH A 32 1032 1032 HOH HOH . L 7 HOH A 33 1033 1033 HOH HOH . L 7 HOH A 34 1034 1034 HOH HOH . L 7 HOH A 35 1035 1035 HOH HOH . L 7 HOH A 36 1036 1036 HOH HOH . L 7 HOH A 37 1037 1037 HOH HOH . L 7 HOH A 38 1038 1038 HOH HOH . L 7 HOH A 39 1039 1039 HOH HOH . L 7 HOH A 40 1040 1040 HOH HOH . L 7 HOH A 41 1041 1041 HOH HOH . L 7 HOH A 42 1042 1042 HOH HOH . L 7 HOH A 43 1043 1043 HOH HOH . L 7 HOH A 44 1044 1044 HOH HOH . L 7 HOH A 45 1045 1045 HOH HOH . L 7 HOH A 46 1046 1046 HOH HOH . L 7 HOH A 47 1047 1047 HOH HOH . L 7 HOH A 48 1048 1048 HOH HOH . L 7 HOH A 49 1049 1049 HOH HOH . L 7 HOH A 50 1050 1050 HOH HOH . L 7 HOH A 51 1051 1051 HOH HOH . L 7 HOH A 52 1052 1052 HOH HOH . L 7 HOH A 53 1053 1053 HOH HOH . L 7 HOH A 54 1054 1054 HOH HOH . L 7 HOH A 55 1055 1055 HOH HOH . L 7 HOH A 56 1056 1056 HOH HOH . L 7 HOH A 57 1057 1057 HOH HOH . L 7 HOH A 58 1058 1058 HOH HOH . L 7 HOH A 59 1059 1059 HOH HOH . L 7 HOH A 60 1060 1060 HOH HOH . L 7 HOH A 61 1061 1061 HOH HOH . L 7 HOH A 62 1062 1062 HOH HOH . L 7 HOH A 63 1063 1063 HOH HOH . L 7 HOH A 64 1064 1064 HOH HOH . L 7 HOH A 65 1065 1065 HOH HOH . L 7 HOH A 66 1066 1066 HOH HOH . L 7 HOH A 67 1067 1067 HOH HOH . L 7 HOH A 68 1068 1068 HOH HOH . L 7 HOH A 69 1069 1069 HOH HOH . L 7 HOH A 70 1070 1070 HOH HOH . L 7 HOH A 71 1071 1071 HOH HOH . L 7 HOH A 72 1072 1072 HOH HOH . L 7 HOH A 73 1073 1073 HOH HOH . L 7 HOH A 74 1074 1074 HOH HOH . L 7 HOH A 75 1075 1075 HOH HOH . L 7 HOH A 76 1076 1076 HOH HOH . L 7 HOH A 77 1077 1077 HOH HOH . L 7 HOH A 78 1078 1078 HOH HOH . L 7 HOH A 79 1079 1079 HOH HOH . L 7 HOH A 80 1080 1080 HOH HOH . L 7 HOH A 81 1081 1081 HOH HOH . M 7 HOH B 1 1082 1082 HOH HOH . M 7 HOH B 2 1083 1083 HOH HOH . M 7 HOH B 3 1084 1084 HOH HOH . M 7 HOH B 4 1085 1085 HOH HOH . M 7 HOH B 5 1086 1086 HOH HOH . M 7 HOH B 6 1087 1087 HOH HOH . M 7 HOH B 7 1088 1088 HOH HOH . M 7 HOH B 8 1089 1089 HOH HOH . M 7 HOH B 9 1090 1090 HOH HOH . M 7 HOH B 10 1091 1091 HOH HOH . M 7 HOH B 11 1092 1092 HOH HOH . M 7 HOH B 12 1093 1093 HOH HOH . M 7 HOH B 13 1094 1094 HOH HOH . M 7 HOH B 14 1095 1095 HOH HOH . M 7 HOH B 15 1096 1096 HOH HOH . M 7 HOH B 16 1097 1097 HOH HOH . M 7 HOH B 17 1098 1098 HOH HOH . M 7 HOH B 18 1099 1099 HOH HOH . M 7 HOH B 19 1100 1100 HOH HOH . M 7 HOH B 20 1101 1101 HOH HOH . M 7 HOH B 21 1102 1102 HOH HOH . M 7 HOH B 22 1103 1103 HOH HOH . M 7 HOH B 23 1104 1104 HOH HOH . M 7 HOH B 24 1105 1105 HOH HOH . M 7 HOH B 25 1106 1106 HOH HOH . M 7 HOH B 26 1107 1107 HOH HOH . M 7 HOH B 27 1108 1108 HOH HOH . M 7 HOH B 28 1109 1109 HOH HOH . M 7 HOH B 29 1110 1110 HOH HOH . M 7 HOH B 30 1111 1111 HOH HOH . M 7 HOH B 31 1112 1112 HOH HOH . M 7 HOH B 32 1113 1113 HOH HOH . M 7 HOH B 33 1114 1114 HOH HOH . M 7 HOH B 34 1115 1115 HOH HOH . M 7 HOH B 35 1116 1116 HOH HOH . M 7 HOH B 36 1117 1117 HOH HOH . M 7 HOH B 37 1118 1118 HOH HOH . M 7 HOH B 38 1119 1119 HOH HOH . M 7 HOH B 39 1120 1120 HOH HOH . M 7 HOH B 40 1121 1121 HOH HOH . M 7 HOH B 41 1122 1122 HOH HOH . M 7 HOH B 42 1123 1123 HOH HOH . M 7 HOH B 43 1124 1124 HOH HOH . M 7 HOH B 44 1125 1125 HOH HOH . M 7 HOH B 45 1126 1126 HOH HOH . M 7 HOH B 46 1127 1127 HOH HOH . M 7 HOH B 47 1128 1128 HOH HOH . M 7 HOH B 48 1129 1129 HOH HOH . M 7 HOH B 49 1130 1130 HOH HOH . M 7 HOH B 50 1131 1131 HOH HOH . M 7 HOH B 51 1132 1132 HOH HOH . M 7 HOH B 52 1133 1133 HOH HOH . M 7 HOH B 53 1134 1134 HOH HOH . M 7 HOH B 54 1135 1135 HOH HOH . M 7 HOH B 55 1136 1136 HOH HOH . M 7 HOH B 56 1137 1137 HOH HOH . M 7 HOH B 57 1138 1138 HOH HOH . M 7 HOH B 58 1139 1139 HOH HOH . M 7 HOH B 59 1140 1140 HOH HOH . M 7 HOH B 60 1141 1141 HOH HOH . M 7 HOH B 61 1142 1142 HOH HOH . M 7 HOH B 62 1143 1143 HOH HOH . M 7 HOH B 63 1144 1144 HOH HOH . M 7 HOH B 64 1145 1145 HOH HOH . M 7 HOH B 65 1146 1146 HOH HOH . M 7 HOH B 66 1147 1147 HOH HOH . M 7 HOH B 67 1148 1148 HOH HOH . M 7 HOH B 68 1149 1149 HOH HOH . M 7 HOH B 69 1150 1150 HOH HOH . M 7 HOH B 70 1151 1151 HOH HOH . M 7 HOH B 71 1152 1152 HOH HOH . M 7 HOH B 72 1153 1153 HOH HOH . M 7 HOH B 73 1154 1154 HOH HOH . M 7 HOH B 74 1155 1155 HOH HOH . M 7 HOH B 75 1156 1156 HOH HOH . M 7 HOH B 76 1157 1157 HOH HOH . M 7 HOH B 77 1158 1158 HOH HOH . M 7 HOH B 78 1159 1159 HOH HOH . M 7 HOH B 79 1160 1160 HOH HOH . M 7 HOH B 80 1161 1161 HOH HOH . M 7 HOH B 81 1162 1162 HOH HOH . M 7 HOH B 82 1163 1163 HOH HOH . M 7 HOH B 83 1164 1164 HOH HOH . M 7 HOH B 84 1165 1165 HOH HOH . M 7 HOH B 85 1166 1166 HOH HOH . M 7 HOH B 86 1167 1167 HOH HOH . M 7 HOH B 87 1168 1168 HOH HOH . M 7 HOH B 88 1169 1169 HOH HOH . M 7 HOH B 89 1170 1170 HOH HOH . M 7 HOH B 90 1171 1171 HOH HOH . M 7 HOH B 91 1172 1172 HOH HOH . M 7 HOH B 92 1173 1173 HOH HOH . M 7 HOH B 93 1174 1174 HOH HOH . M 7 HOH B 94 1175 1175 HOH HOH . M 7 HOH B 95 1176 1176 HOH HOH . M 7 HOH B 96 1177 1177 HOH HOH . M 7 HOH B 97 1178 1178 HOH HOH . M 7 HOH B 98 1179 1179 HOH HOH . M 7 HOH B 99 1180 1180 HOH HOH . M 7 HOH B 100 1181 1181 HOH HOH . M 7 HOH B 101 1182 1182 HOH HOH . M 7 HOH B 102 1183 1183 HOH HOH . M 7 HOH B 103 1184 1184 HOH HOH . M 7 HOH B 104 1185 1185 HOH HOH . M 7 HOH B 105 1186 1186 HOH HOH . M 7 HOH B 106 1187 1187 HOH HOH . M 7 HOH B 107 1188 1188 HOH HOH . M 7 HOH B 108 1189 1189 HOH HOH . M 7 HOH B 109 1190 1190 HOH HOH . M 7 HOH B 110 1191 1191 HOH HOH . M 7 HOH B 111 1192 1192 HOH HOH . M 7 HOH B 112 1193 1193 HOH HOH . M 7 HOH B 113 1194 1194 HOH HOH . M 7 HOH B 114 1195 1195 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . D 3 9.763 2.551 33.942 1 43.13 ? N1 H4B 760 A 1 HETATM 2 C C2 H4B . . . D 3 9.917 2.154 32.672 1 42.69 ? C2 H4B 760 A 1 HETATM 3 N N2 H4B . . . D 3 11.182 1.986 32.174 1 40.87 ? N2 H4B 760 A 1 HETATM 4 N N3 H4B . . . D 3 8.804 1.948 31.912 1 42.02 ? N3 H4B 760 A 1 HETATM 5 C C4 H4B . . . D 3 7.546 2.091 32.364 1 41.49 ? C4 H4B 760 A 1 HETATM 6 O O4 H4B . . . D 3 6.596 1.853 31.556 1 44.14 ? O4 H4B 760 A 1 HETATM 7 C C4A H4B . . . D 3 7.369 2.505 33.687 1 40.71 ? C4A H4B 760 A 1 HETATM 8 C C8A H4B . . . D 3 8.526 2.738 34.456 1 41.25 ? C8A H4B 760 A 1 HETATM 9 N N5 H4B . . . D 3 6.149 2.729 34.261 1 39.64 ? N5 H4B 760 A 1 HETATM 10 N N8 H4B . . . D 3 8.474 3.146 35.753 1 37.99 ? N8 H4B 760 A 1 HETATM 11 C C6 H4B . . . D 3 6.149 3.719 35.368 1 43.72 ? C6 H4B 760 A 1 HETATM 12 C C7 H4B . . . D 3 7.203 3.371 36.418 1 40.17 ? C7 H4B 760 A 1 HETATM 13 C C9 H4B . . . D 3 4.822 3.822 36.1 1 44.66 ? C9 H4B 760 A 1 HETATM 14 O O9 H4B . . . D 3 4.539 2.51 36.567 1 47.04 ? O9 H4B 760 A 1 HETATM 15 C C10 H4B . . . D 3 4.82 4.772 37.298 1 46.91 ? C10 H4B 760 A 1 HETATM 16 C C11 H4B . . . D 3 3.42 4.841 37.913 1 47.73 ? C11 H4B 760 A 1 HETATM 17 O O10 H4B . . . D 3 5.175 6.104 36.911 1 48.46 ? O10 H4B 760 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #