data_3N68 # _model_server_result.job_id qJTwopJ_cGH-0K4XaU5qZQ _model_server_result.datetime_utc '2024-11-13 15:22:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n68 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":500}' # _entry.id 3N68 # _exptl.entry_id 3N68 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3N68 _cell.length_a 57.81 _cell.length_b 106.578 _cell.length_c 157.078 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N68 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 58 A CYS 96 1_555 J ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc2 A SG CYS 63 A CYS 101 1_555 J ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc3 A SG CYS 148 A CYS 186 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc4 J ZN ZN . A ZN 900 1_555 B SG CYS 58 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc5 J ZN ZN . A ZN 900 1_555 B SG CYS 63 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc6 B SG CYS 148 B CYS 186 1_555 K FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 192 n n CHA C4D HEM doub 193 n n CHA HHA HEM sing 194 n n CHB C4A HEM sing 195 n n CHB C1B HEM doub 196 n n CHB HHB HEM sing 197 n n CHC C4B HEM sing 198 n n CHC C1C HEM doub 199 n n CHC HHC HEM sing 200 n n CHD C4C HEM doub 201 n n CHD C1D HEM sing 202 n n CHD HHD HEM sing 203 n n C1A C2A HEM doub 204 n y C1A NA HEM sing 205 n y C2A C3A HEM sing 206 n y C2A CAA HEM sing 207 n n C3A C4A HEM doub 208 n y C3A CMA HEM sing 209 n n C4A NA HEM sing 210 n y CMA HMA HEM sing 211 n n CMA HMAA HEM sing 212 n n CMA HMAB HEM sing 213 n n CAA CBA HEM sing 214 n n CAA HAA HEM sing 215 n n CAA HAAA HEM sing 216 n n CBA CGA HEM sing 217 n n CBA HBA HEM sing 218 n n CBA HBAA HEM sing 219 n n CGA O1A HEM doub 220 n n CGA O2A HEM sing 221 n n C1B C2B HEM sing 222 n n C1B NB HEM sing 223 n n C2B C3B HEM doub 224 n n C2B CMB HEM sing 225 n n C3B C4B HEM sing 226 n n C3B CAB HEM sing 227 n n C4B NB HEM doub 228 n n CMB HMB HEM sing 229 n n CMB HMBA HEM sing 230 n n CMB HMBB HEM sing 231 n n CAB CBB HEM doub 232 n n CAB HAB HEM sing 233 n n CBB HBB HEM sing 234 n n CBB HBBA HEM sing 235 n n C1C C2C HEM sing 236 n y C1C NC HEM sing 237 n y C2C C3C HEM doub 238 n y C2C CMC HEM sing 239 n n C3C C4C HEM sing 240 n y C3C CAC HEM sing 241 n n C4C NC HEM sing 242 n y CMC HMC HEM sing 243 n n CMC HMCA HEM sing 244 n n CMC HMCB HEM sing 245 n n CAC CBC HEM doub 246 n n CAC HAC HEM sing 247 n n CBC HBC HEM sing 248 n n CBC HBCA HEM sing 249 n n C1D C2D HEM sing 250 n n C1D ND HEM doub 251 n n C2D C3D HEM doub 252 n n C2D CMD HEM sing 253 n n C3D C4D HEM sing 254 n n C3D CAD HEM sing 255 n n C4D ND HEM sing 256 n n CMD HMD HEM sing 257 n n CMD HMDA HEM sing 258 n n CMD HMDB HEM sing 259 n n CAD CBD HEM sing 260 n n CAD HAD HEM sing 261 n n CAD HADA HEM sing 262 n n CBD CGD HEM sing 263 n n CBD HBD HEM sing 264 n n CBD HBDA HEM sing 265 n n CGD O1D HEM doub 266 n n CGD O2D HEM sing 267 n n O2A H2A HEM sing 268 n n O2D H2D HEM sing 269 n n FE NA HEM sing 270 n n FE NB HEM sing 271 n n FE NC HEM sing 272 n n FE ND HEM sing 273 n n # _atom_sites.entry_id 3N68 _atom_sites.fract_transf_matrix[1][1] 0.017298 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009383 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006366 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 H4B A 1 600 600 H4B H4B . E 4 ACT A 1 850 850 ACT ACT . F 4 ACT A 1 860 860 ACT ACT . G 5 GOL A 1 880 880 GOL GOL . H 6 XFH A 1 800 800 XFH XFH . I 7 CAD A 1 950 950 CAD CAD . J 8 ZN A 1 900 900 ZN ZN . K 2 HEM B 1 500 500 HEM HEM . L 3 H4B B 1 600 600 H4B H4B . M 5 GOL B 1 880 880 GOL GOL . N 6 XFH B 1 800 800 XFH XFH . O 7 CAD B 1 950 950 CAD CAD . P 9 HOH A 1 1001 1001 HOH HOH . P 9 HOH A 2 1002 1002 HOH HOH . P 9 HOH A 3 1003 1003 HOH HOH . P 9 HOH A 4 1004 1004 HOH HOH . P 9 HOH A 5 1005 1005 HOH HOH . P 9 HOH A 6 1006 1006 HOH HOH . P 9 HOH A 7 1007 1007 HOH HOH . P 9 HOH A 8 1008 1008 HOH HOH . P 9 HOH A 9 1009 1009 HOH HOH . P 9 HOH A 10 1010 1010 HOH HOH . P 9 HOH A 11 1011 1011 HOH HOH . P 9 HOH A 12 1012 1012 HOH HOH . P 9 HOH A 13 1013 1013 HOH HOH . P 9 HOH A 14 1014 1014 HOH HOH . P 9 HOH A 15 1015 1015 HOH HOH . P 9 HOH A 16 1016 1016 HOH HOH . P 9 HOH A 17 1017 1017 HOH HOH . P 9 HOH A 18 1018 1018 HOH HOH . P 9 HOH A 19 1019 1019 HOH HOH . P 9 HOH A 20 1020 1020 HOH HOH . P 9 HOH A 21 1021 1021 HOH HOH . P 9 HOH A 22 1022 1022 HOH HOH . P 9 HOH A 23 1023 1023 HOH HOH . P 9 HOH A 24 1024 1024 HOH HOH . P 9 HOH A 25 1025 1025 HOH HOH . P 9 HOH A 26 1026 1026 HOH HOH . P 9 HOH A 27 1027 1027 HOH HOH . P 9 HOH A 28 1028 1028 HOH HOH . P 9 HOH A 29 1029 1029 HOH HOH . P 9 HOH A 30 1030 1030 HOH HOH . P 9 HOH A 31 1031 1031 HOH HOH . P 9 HOH A 32 1032 1032 HOH HOH . P 9 HOH A 33 1033 1033 HOH HOH . P 9 HOH A 34 1034 1034 HOH HOH . P 9 HOH A 35 1035 1035 HOH HOH . P 9 HOH A 36 1036 1036 HOH HOH . P 9 HOH A 37 1037 1037 HOH HOH . P 9 HOH A 38 1038 1038 HOH HOH . P 9 HOH A 39 1039 1039 HOH HOH . P 9 HOH A 40 1040 1040 HOH HOH . P 9 HOH A 41 1041 1041 HOH HOH . P 9 HOH A 42 1042 1042 HOH HOH . P 9 HOH A 43 1043 1043 HOH HOH . P 9 HOH A 44 1044 1044 HOH HOH . P 9 HOH A 45 1045 1045 HOH HOH . P 9 HOH A 46 1046 1046 HOH HOH . P 9 HOH A 47 1047 1047 HOH HOH . P 9 HOH A 48 1048 1048 HOH HOH . Q 9 HOH B 1 1049 1049 HOH HOH . Q 9 HOH B 2 1050 1050 HOH HOH . Q 9 HOH B 3 1051 1051 HOH HOH . Q 9 HOH B 4 1052 1052 HOH HOH . Q 9 HOH B 5 1053 1053 HOH HOH . Q 9 HOH B 6 1054 1054 HOH HOH . Q 9 HOH B 7 1055 1055 HOH HOH . Q 9 HOH B 8 1056 1056 HOH HOH . Q 9 HOH B 9 1057 1057 HOH HOH . Q 9 HOH B 10 1058 1058 HOH HOH . Q 9 HOH B 11 1059 1059 HOH HOH . Q 9 HOH B 12 1060 1060 HOH HOH . Q 9 HOH B 13 1061 1061 HOH HOH . Q 9 HOH B 14 1062 1062 HOH HOH . Q 9 HOH B 15 1063 1063 HOH HOH . Q 9 HOH B 16 1064 1064 HOH HOH . Q 9 HOH B 17 1065 1065 HOH HOH . Q 9 HOH B 18 1066 1066 HOH HOH . Q 9 HOH B 19 1067 1067 HOH HOH . Q 9 HOH B 20 1068 1068 HOH HOH . Q 9 HOH B 21 1069 1069 HOH HOH . Q 9 HOH B 22 1070 1070 HOH HOH . Q 9 HOH B 23 1071 1071 HOH HOH . Q 9 HOH B 24 1072 1072 HOH HOH . Q 9 HOH B 25 1073 1073 HOH HOH . Q 9 HOH B 26 1074 1074 HOH HOH . Q 9 HOH B 27 1075 1075 HOH HOH . Q 9 HOH B 28 1076 1076 HOH HOH . Q 9 HOH B 29 1077 1077 HOH HOH . Q 9 HOH B 30 1078 1078 HOH HOH . Q 9 HOH B 31 1079 1079 HOH HOH . Q 9 HOH B 32 1080 1080 HOH HOH . Q 9 HOH B 33 1081 1081 HOH HOH . Q 9 HOH B 34 1082 1082 HOH HOH . Q 9 HOH B 35 1083 1083 HOH HOH . Q 9 HOH B 36 1084 1084 HOH HOH . Q 9 HOH B 37 1085 1085 HOH HOH . Q 9 HOH B 38 1086 1086 HOH HOH . Q 9 HOH B 39 1087 1087 HOH HOH . Q 9 HOH B 40 1088 1088 HOH HOH . Q 9 HOH B 41 1089 1089 HOH HOH . Q 9 HOH B 42 1090 1090 HOH HOH . Q 9 HOH B 43 1091 1091 HOH HOH . Q 9 HOH B 44 1092 1092 HOH HOH . Q 9 HOH B 45 1093 1093 HOH HOH . Q 9 HOH B 46 1094 1094 HOH HOH . Q 9 HOH B 47 1095 1095 HOH HOH . Q 9 HOH B 48 1096 1096 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . K 2 4.528 7.593 64.381 1 28.83 ? CHA HEM 500 B 1 HETATM 2 C CHB HEM . . . K 2 2.535 11.941 64.955 1 29.98 ? CHB HEM 500 B 1 HETATM 3 C CHC HEM . . . K 2 3.65 11.762 69.649 1 29.63 ? CHC HEM 500 B 1 HETATM 4 C CHD HEM . . . K 2 6.041 7.621 68.999 1 30.22 ? CHD HEM 500 B 1 HETATM 5 C C1A HEM . . . K 2 3.777 8.716 64.178 1 30.9 ? C1A HEM 500 B 1 HETATM 6 C C2A HEM . . . K 2 2.951 9.012 63.013 1 33.07 ? C2A HEM 500 B 1 HETATM 7 C C3A HEM . . . K 2 2.402 10.217 63.159 1 31.75 ? C3A HEM 500 B 1 HETATM 8 C C4A HEM . . . K 2 2.852 10.717 64.434 1 30.07 ? C4A HEM 500 B 1 HETATM 9 C CMA HEM . . . K 2 1.471 10.934 62.147 1 30.82 ? CMA HEM 500 B 1 HETATM 10 C CAA HEM . . . K 2 2.755 8.12 61.789 1 36.08 ? CAA HEM 500 B 1 HETATM 11 C CBA HEM . . . K 2 2.003 6.887 62.264 1 40.83 ? CBA HEM 500 B 1 HETATM 12 C CGA HEM . . . K 2 0.714 6.642 61.524 1 40.54 ? CGA HEM 500 B 1 HETATM 13 O O1A HEM . . . K 2 0.301 7.452 60.637 1 41.27 ? O1A HEM 500 B 1 HETATM 14 O O2A HEM . . . K 2 0.125 5.584 61.85 1 40.03 ? O2A HEM 500 B 1 HETATM 15 C C1B HEM . . . K 2 2.702 12.293 66.272 1 27.96 ? C1B HEM 500 B 1 HETATM 16 C C2B HEM . . . K 2 2.301 13.549 66.855 1 27.09 ? C2B HEM 500 B 1 HETATM 17 C C3B HEM . . . K 2 2.599 13.508 68.143 1 27.28 ? C3B HEM 500 B 1 HETATM 18 C C4B HEM . . . K 2 3.21 12.214 68.409 1 29.23 ? C4B HEM 500 B 1 HETATM 19 C CMB HEM . . . K 2 1.658 14.729 66.096 1 27.47 ? CMB HEM 500 B 1 HETATM 20 C CAB HEM . . . K 2 2.351 14.638 69.164 1 28.07 ? CAB HEM 500 B 1 HETATM 21 C CBB HEM . . . K 2 2.763 14.503 70.431 1 28.17 ? CBB HEM 500 B 1 HETATM 22 C C1C HEM . . . K 2 4.325 10.598 69.898 1 28.83 ? C1C HEM 500 B 1 HETATM 23 C C2C HEM . . . K 2 4.702 10.078 71.196 1 29.77 ? C2C HEM 500 B 1 HETATM 24 C C3C HEM . . . K 2 5.381 8.934 70.994 1 32.06 ? C3C HEM 500 B 1 HETATM 25 C C4C HEM . . . K 2 5.421 8.692 69.577 1 30.11 ? C4C HEM 500 B 1 HETATM 26 C CMC HEM . . . K 2 4.416 10.716 72.563 1 27.46 ? CMC HEM 500 B 1 HETATM 27 C CAC HEM . . . K 2 6.01 7.992 72.058 1 33.69 ? CAC HEM 500 B 1 HETATM 28 C CBC HEM . . . K 2 6.64 8.489 73.138 1 34.58 ? CBC HEM 500 B 1 HETATM 29 C C1D HEM . . . K 2 5.878 7.217 67.708 1 31.14 ? C1D HEM 500 B 1 HETATM 30 C C2D HEM . . . K 2 6.43 6.006 67.167 1 30.76 ? C2D HEM 500 B 1 HETATM 31 C C3D HEM . . . K 2 5.953 5.995 65.722 1 30.94 ? C3D HEM 500 B 1 HETATM 32 C C4D HEM . . . K 2 5.165 7.21 65.54 1 31.61 ? C4D HEM 500 B 1 HETATM 33 C CMD HEM . . . K 2 7.3 4.959 67.903 1 31.8 ? CMD HEM 500 B 1 HETATM 34 C CAD HEM . . . K 2 6.278 4.931 64.661 1 34.52 ? CAD HEM 500 B 1 HETATM 35 C CBD HEM . . . K 2 5.346 3.729 64.677 1 34.89 ? CBD HEM 500 B 1 HETATM 36 C CGD HEM . . . K 2 5.807 2.699 63.673 1 36.73 ? CGD HEM 500 B 1 HETATM 37 O O1D HEM . . . K 2 7.048 2.449 63.45 1 33.94 ? O1D HEM 500 B 1 HETATM 38 O O2D HEM . . . K 2 4.854 2.129 63.084 1 37.33 ? O2D HEM 500 B 1 HETATM 39 N NA HEM . . . K 2 3.694 9.786 65.032 1 29.73 ? NA HEM 500 B 1 HETATM 40 N NB HEM . . . K 2 3.263 11.496 67.233 1 27.33 ? NB HEM 500 B 1 HETATM 41 N NC HEM . . . K 2 4.759 9.715 68.932 1 29.14 ? NC HEM 500 B 1 HETATM 42 N ND HEM . . . K 2 5.148 7.911 66.74 1 30.96 ? ND HEM 500 B 1 HETATM 43 FE FE HEM . . . K 2 4.491 9.852 66.938 1 31.79 ? FE HEM 500 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #