data_3N6B
#
_model_server_result.job_id            ysAmFBARlQfnf1czhJoaGQ 
_model_server_result.datetime_utc      '2024-11-15 06:25:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3n6b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":800}' 
#
_entry.id    3N6B 
#
_exptl.entry_id    3N6B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.457 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "6,6'-(pyridine-3,5-diyldiethane-2,1-diyl)bis(4-methylpyridin-2-amine)" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3N6B 
_cell.length_a            57.764 
_cell.length_b            106.549 
_cell.length_c            157.823 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3N6B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 58 A CYS 96 1_555 G ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc2 A SG CYS 63 A CYS 101 1_555 G ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc3 A SG CYS 148 A CYS 186 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc4 G ZN ZN . A ZN 900 1_555 B SG CYS 58 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc5 G ZN ZN . A ZN 900 1_555 B SG CYS 63 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
#
_chem_comp.formula           'C21 H25 N5' 
_chem_comp.formula_weight    347.457 
_chem_comp.id                XFJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "6,6'-(pyridine-3,5-diyldiethane-2,1-diyl)bis(4-methylpyridin-2-amine)" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N01 C06 XFJ doub 502 n y 
N01 C02 XFJ sing 503 n y 
N02 C02 XFJ sing 504 n n 
C02 C03 XFJ doub 505 n y 
N02 HN02 XFJ sing 506 n n 
N02 HN0A XFJ sing 507 n n 
C03 C04 XFJ sing 508 n y 
C03 H03 XFJ sing 509 n n 
C05 C04 XFJ doub 510 n y 
C04 C07 XFJ sing 511 n n 
C06 C05 XFJ sing 512 n y 
C05 H05 XFJ sing 513 n n 
C08 C06 XFJ sing 514 n n 
C07 H07 XFJ sing 515 n n 
C07 H07A XFJ sing 516 n n 
C07 H07B XFJ sing 517 n n 
C08 C09 XFJ sing 518 n n 
C08 H08 XFJ sing 519 n n 
C08 H08A XFJ sing 520 n n 
C13 C09 XFJ sing 521 n n 
C09 H09 XFJ sing 522 n n 
C09 H09A XFJ sing 523 n n 
C16 N11 XFJ doub 524 n y 
N11 C12 XFJ sing 525 n y 
C12 C13 XFJ doub 526 n y 
C12 H12 XFJ sing 527 n n 
C14 C13 XFJ sing 528 n y 
C15 C14 XFJ doub 529 n y 
C14 H14 XFJ sing 530 n n 
C17 C15 XFJ sing 531 n n 
C16 C15 XFJ sing 532 n y 
C16 H16 XFJ sing 533 n n 
C17 C18 XFJ sing 534 n n 
C17 H17 XFJ sing 535 n n 
C17 H17A XFJ sing 536 n n 
C26 C18 XFJ sing 537 n n 
C18 H18 XFJ sing 538 n n 
C18 H18A XFJ sing 539 n n 
C22 N21 XFJ doub 540 n y 
C26 N21 XFJ sing 541 n y 
C23 C22 XFJ sing 542 n y 
C22 N22 XFJ sing 543 n n 
N22 HN22 XFJ sing 544 n n 
N22 HN2A XFJ sing 545 n n 
C24 C23 XFJ doub 546 n y 
C23 H23 XFJ sing 547 n n 
C27 C24 XFJ sing 548 n n 
C24 C25 XFJ sing 549 n y 
C25 C26 XFJ doub 550 n y 
C25 H25 XFJ sing 551 n n 
C27 H27 XFJ sing 552 n n 
C27 H27A XFJ sing 553 n n 
C27 H27B XFJ sing 554 n n 
#
_atom_sites.entry_id                     3N6B 
_atom_sites.fract_transf_matrix[1][1]    0.017312 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009385 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006336 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 500 500 HEM HEM . 
D 3 H4B A 1 600 600 H4B H4B . 
E 4 CAD A 1 950 950 CAD CAD . 
F 5 XFJ A 1 800 800 XFJ XFJ . 
G 6 ZN A 1 900 900 ZN ZN . 
H 2 HEM B 1 500 500 HEM HEM . 
I 3 H4B B 1 600 600 H4B H4B . 
J 4 CAD B 1 950 950 CAD CAD . 
K 5 XFJ B 1 800 800 XFJ XFJ . 
L 7 HOH A 1 1001 1001 HOH HOH . 
L 7 HOH A 2 1002 1002 HOH HOH . 
L 7 HOH A 3 1003 1003 HOH HOH . 
L 7 HOH A 4 1004 1004 HOH HOH . 
L 7 HOH A 5 1005 1005 HOH HOH . 
M 7 HOH B 1 1006 1006 HOH HOH . 
M 7 HOH B 2 1007 1007 HOH HOH . 
M 7 HOH B 3 1008 1008 HOH HOH . 
M 7 HOH B 4 1009 1009 HOH HOH . 
M 7 HOH B 5 1010 1010 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N01 XFJ . . . K 5 0.186 9.036 66.315 1 59.58 ? N01 XFJ 800 B 1 
HETATM 2 C C02 XFJ . . . K 5 0.214 10.087 67.126 1 58.68 ? C02 XFJ 800 B 1 
HETATM 3 N N02 XFJ . . . K 5 -0.319 11.248 66.683 1 59.92 ? N02 XFJ 800 B 1 
HETATM 4 C C03 XFJ . . . K 5 0.803 9.968 68.377 1 57.68 ? C03 XFJ 800 B 1 
HETATM 5 C C04 XFJ . . . K 5 1.345 8.746 68.758 1 57.42 ? C04 XFJ 800 B 1 
HETATM 6 C C05 XFJ . . . K 5 1.302 7.673 67.901 1 58.99 ? C05 XFJ 800 B 1 
HETATM 7 C C06 XFJ . . . K 5 0.709 7.852 66.67 1 63.44 ? C06 XFJ 800 B 1 
HETATM 8 C C07 XFJ . . . K 5 1.987 8.569 70.102 1 57.67 ? C07 XFJ 800 B 1 
HETATM 9 C C08 XFJ . . . K 5 0.618 6.706 65.69 1 72.01 ? C08 XFJ 800 B 1 
HETATM 10 C C09 XFJ . . . K 5 -0.696 5.945 65.918 1 79.55 ? C09 XFJ 800 B 1 
HETATM 11 N N11 XFJ . . . K 5 -2.603 3.436 63.84 1 90.41 ? N11 XFJ 800 B 1 
HETATM 12 C C12 XFJ . . . K 5 -2.298 4.419 64.71 1 88.79 ? C12 XFJ 800 B 1 
HETATM 13 C C13 XFJ . . . K 5 -0.976 4.844 64.91 1 86.01 ? C13 XFJ 800 B 1 
HETATM 14 C C14 XFJ . . . K 5 0.047 4.221 64.195 1 89.73 ? C14 XFJ 800 B 1 
HETATM 15 C C15 XFJ . . . K 5 -0.289 3.209 63.29 1 93.14 ? C15 XFJ 800 B 1 
HETATM 16 C C16 XFJ . . . K 5 -1.632 2.837 63.133 1 92.05 ? C16 XFJ 800 B 1 
HETATM 17 C C17 XFJ . . . K 5 0.801 2.504 62.508 1 95.92 ? C17 XFJ 800 B 1 
HETATM 18 C C18 XFJ . . . K 5 1.374 1.462 63.469 1 99.15 ? C18 XFJ 800 B 1 
HETATM 19 N N21 XFJ . . . K 5 1.701 -0.713 62.377 1 103.49 ? N21 XFJ 800 B 1 
HETATM 20 C C22 XFJ . . . K 5 1.297 -1.956 62.007 1 105.37 ? C22 XFJ 800 B 1 
HETATM 21 N N22 XFJ . . . K 5 2.16 -2.733 61.306 1 104.82 ? N22 XFJ 800 B 1 
HETATM 22 C C23 XFJ . . . K 5 0.002 -2.427 62.346 1 106.42 ? C23 XFJ 800 B 1 
HETATM 23 C C24 XFJ . . . K 5 -0.888 -1.614 63.084 1 106.09 ? C24 XFJ 800 B 1 
HETATM 24 C C25 XFJ . . . K 5 -0.425 -0.336 63.453 1 104.32 ? C25 XFJ 800 B 1 
HETATM 25 C C26 XFJ . . . K 5 0.872 0.094 63.088 1 102.39 ? C26 XFJ 800 B 1 
HETATM 26 C C27 XFJ . . . K 5 -2.283 -2.097 63.473 1 104.81 ? C27 XFJ 800 B 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           26 
#