data_3N6C
#
_model_server_result.job_id            6aP88DXqQ6CBBfBmGoH9BA 
_model_server_result.datetime_utc      '2024-11-23 11:45:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3n6c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":500}' 
#
_entry.id    3N6C 
#
_exptl.entry_id    3N6C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3N6C 
_cell.length_a            58.142 
_cell.length_b            105.691 
_cell.length_c            159.211 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3N6C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 58 A CYS 96 1_555 P ZN ZN . B ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? 
metalc ? metalc2 A SG CYS 63 A CYS 101 1_555 P ZN ZN . B ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc3 A SG CYS 148 A CYS 186 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc4 B SG CYS 58 B CYS 96 1_555 P ZN ZN . B ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 192 n n 
CHA C4D HEM doub 193 n n 
CHA HHA HEM sing 194 n n 
CHB C4A HEM sing 195 n n 
CHB C1B HEM doub 196 n n 
CHB HHB HEM sing 197 n n 
CHC C4B HEM sing 198 n n 
CHC C1C HEM doub 199 n n 
CHC HHC HEM sing 200 n n 
CHD C4C HEM doub 201 n n 
CHD C1D HEM sing 202 n n 
CHD HHD HEM sing 203 n n 
C1A C2A HEM doub 204 n y 
C1A NA HEM sing 205 n y 
C2A C3A HEM sing 206 n y 
C2A CAA HEM sing 207 n n 
C3A C4A HEM doub 208 n y 
C3A CMA HEM sing 209 n n 
C4A NA HEM sing 210 n y 
CMA HMA HEM sing 211 n n 
CMA HMAA HEM sing 212 n n 
CMA HMAB HEM sing 213 n n 
CAA CBA HEM sing 214 n n 
CAA HAA HEM sing 215 n n 
CAA HAAA HEM sing 216 n n 
CBA CGA HEM sing 217 n n 
CBA HBA HEM sing 218 n n 
CBA HBAA HEM sing 219 n n 
CGA O1A HEM doub 220 n n 
CGA O2A HEM sing 221 n n 
C1B C2B HEM sing 222 n n 
C1B NB HEM sing 223 n n 
C2B C3B HEM doub 224 n n 
C2B CMB HEM sing 225 n n 
C3B C4B HEM sing 226 n n 
C3B CAB HEM sing 227 n n 
C4B NB HEM doub 228 n n 
CMB HMB HEM sing 229 n n 
CMB HMBA HEM sing 230 n n 
CMB HMBB HEM sing 231 n n 
CAB CBB HEM doub 232 n n 
CAB HAB HEM sing 233 n n 
CBB HBB HEM sing 234 n n 
CBB HBBA HEM sing 235 n n 
C1C C2C HEM sing 236 n y 
C1C NC HEM sing 237 n y 
C2C C3C HEM doub 238 n y 
C2C CMC HEM sing 239 n n 
C3C C4C HEM sing 240 n y 
C3C CAC HEM sing 241 n n 
C4C NC HEM sing 242 n y 
CMC HMC HEM sing 243 n n 
CMC HMCA HEM sing 244 n n 
CMC HMCB HEM sing 245 n n 
CAC CBC HEM doub 246 n n 
CAC HAC HEM sing 247 n n 
CBC HBC HEM sing 248 n n 
CBC HBCA HEM sing 249 n n 
C1D C2D HEM sing 250 n n 
C1D ND HEM doub 251 n n 
C2D C3D HEM doub 252 n n 
C2D CMD HEM sing 253 n n 
C3D C4D HEM sing 254 n n 
C3D CAD HEM sing 255 n n 
C4D ND HEM sing 256 n n 
CMD HMD HEM sing 257 n n 
CMD HMDA HEM sing 258 n n 
CMD HMDB HEM sing 259 n n 
CAD CBD HEM sing 260 n n 
CAD HAD HEM sing 261 n n 
CAD HADA HEM sing 262 n n 
CBD CGD HEM sing 263 n n 
CBD HBD HEM sing 264 n n 
CBD HBDA HEM sing 265 n n 
CGD O1D HEM doub 266 n n 
CGD O2D HEM sing 267 n n 
O2A H2A HEM sing 268 n n 
O2D H2D HEM sing 269 n n 
FE NA HEM sing 270 n n 
FE NB HEM sing 271 n n 
FE NC HEM sing 272 n n 
FE ND HEM sing 273 n n 
#
_atom_sites.entry_id                     3N6C 
_atom_sites.fract_transf_matrix[1][1]    0.017199 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009462 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006281 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 500 500 HEM HEM . 
D 3 H4B A 1 600 600 H4B H4B . 
E 4 ACT A 1 860 860 ACT ACT . 
F 5 GOL A 1 880 880 GOL GOL . 
G 6 CAD A 1 950 950 CAD CAD . 
H 7 XFM A 1 800 800 XFM XFM . 
I 2 HEM B 1 500 500 HEM HEM . 
J 3 H4B B 1 600 600 H4B H4B . 
K 4 ACT B 1 850 850 ACT ACT . 
L 4 ACT B 1 860 860 ACT ACT . 
M 5 GOL B 1 880 880 GOL GOL . 
N 6 CAD B 1 950 950 CAD CAD . 
O 7 XFM B 1 800 800 XFM XFM . 
P 8 ZN B 1 900 900 ZN ZN . 
Q 9 HOH A 1 1001 1001 HOH HOH . 
Q 9 HOH A 2 1002 1002 HOH HOH . 
Q 9 HOH A 3 1003 1003 HOH HOH . 
Q 9 HOH A 4 1004 1004 HOH HOH . 
Q 9 HOH A 5 1005 1005 HOH HOH . 
Q 9 HOH A 6 1006 1006 HOH HOH . 
Q 9 HOH A 7 1007 1007 HOH HOH . 
Q 9 HOH A 8 1008 1008 HOH HOH . 
Q 9 HOH A 9 1009 1009 HOH HOH . 
Q 9 HOH A 10 1010 1010 HOH HOH . 
Q 9 HOH A 11 1011 1011 HOH HOH . 
Q 9 HOH A 12 1012 1012 HOH HOH . 
Q 9 HOH A 13 1013 1013 HOH HOH . 
R 9 HOH B 1 1014 1014 HOH HOH . 
R 9 HOH B 2 1015 1015 HOH HOH . 
R 9 HOH B 3 1016 1016 HOH HOH . 
R 9 HOH B 4 1017 1017 HOH HOH . 
R 9 HOH B 5 1018 1018 HOH HOH . 
R 9 HOH B 6 1019 1019 HOH HOH . 
R 9 HOH B 7 1020 1020 HOH HOH . 
R 9 HOH B 8 1021 1021 HOH HOH . 
R 9 HOH B 9 1022 1022 HOH HOH . 
R 9 HOH B 10 1023 1023 HOH HOH . 
R 9 HOH B 11 1024 1024 HOH HOH . 
R 9 HOH B 12 1025 1025 HOH HOH . 
R 9 HOH B 13 1026 1026 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 2 8.766 8.821 35.566 1 50.48 ? CHA HEM 500 A 1 
HETATM 2 C CHB HEM . . . C 2 4.068 9.035 34.425 1 48.5 ? CHB HEM 500 A 1 
HETATM 3 C CHC HEM . . . C 2 5.178 7.647 30.007 1 48.23 ? CHC HEM 500 A 1 
HETATM 4 C CHD HEM . . . C 2 9.813 6.957 31.243 1 47.44 ? CHD HEM 500 A 1 
HETATM 5 C C1A HEM . . . C 2 7.437 9.155 35.567 1 49.93 ? C1A HEM 500 A 1 
HETATM 6 C C2A HEM . . . C 2 6.779 10.032 36.524 1 50.55 ? C2A HEM 500 A 1 
HETATM 7 C C3A HEM . . . C 2 5.478 10.086 36.195 1 49.56 ? C3A HEM 500 A 1 
HETATM 8 C C4A HEM . . . C 2 5.281 9.248 35.039 1 49.25 ? C4A HEM 500 A 1 
HETATM 9 C CMA HEM . . . C 2 4.34 10.866 36.887 1 49.6 ? CMA HEM 500 A 1 
HETATM 10 C CAA HEM . . . C 2 7.481 10.763 37.695 1 51.24 ? CAA HEM 500 A 1 
HETATM 11 C CBA HEM . . . C 2 7.508 12.25 37.363 1 54.45 ? CBA HEM 500 A 1 
HETATM 12 C CGA HEM . . . C 2 8.174 13.062 38.439 1 56.14 ? CGA HEM 500 A 1 
HETATM 13 O O1A HEM . . . C 2 7.646 13.093 39.581 1 56.17 ? O1A HEM 500 A 1 
HETATM 14 O O2A HEM . . . C 2 9.235 13.682 38.136 1 57.9 ? O2A HEM 500 A 1 
HETATM 15 C C1B HEM . . . C 2 3.933 8.725 33.107 1 47.67 ? C1B HEM 500 A 1 
HETATM 16 C C2B HEM . . . C 2 2.739 8.845 32.318 1 46.99 ? C2B HEM 500 A 1 
HETATM 17 C C3B HEM . . . C 2 3.032 8.463 31.081 1 47.09 ? C3B HEM 500 A 1 
HETATM 18 C C4B HEM . . . C 2 4.436 8.091 31.068 1 48.19 ? C4B HEM 500 A 1 
HETATM 19 C CMB HEM . . . C 2 1.377 9.335 32.84 1 47.52 ? CMB HEM 500 A 1 
HETATM 20 C CAB HEM . . . C 2 2.055 8.438 29.884 1 46.42 ? CAB HEM 500 A 1 
HETATM 21 C CBB HEM . . . C 2 1.931 7.358 29.11 1 46.26 ? CBB HEM 500 A 1 
HETATM 22 C C1C HEM . . . C 2 6.535 7.424 29.973 1 46.94 ? C1C HEM 500 A 1 
HETATM 23 C C2C HEM . . . C 2 7.278 7.17 28.76 1 46.23 ? C2C HEM 500 A 1 
HETATM 24 C C3C HEM . . . C 2 8.545 6.99 29.097 1 45.5 ? C3C HEM 500 A 1 
HETATM 25 C C4C HEM . . . C 2 8.658 7.112 30.526 1 46.35 ? C4C HEM 500 A 1 
HETATM 26 C CMC HEM . . . C 2 6.683 7.133 27.337 1 45.1 ? CMC HEM 500 A 1 
HETATM 27 C CAC HEM . . . C 2 9.69 6.691 28.135 1 44.75 ? CAC HEM 500 A 1 
HETATM 28 C CBC HEM . . . C 2 9.791 5.474 27.621 1 46.25 ? CBC HEM 500 A 1 
HETATM 29 C C1D HEM . . . C 2 10.004 7.361 32.536 1 48.59 ? C1D HEM 500 A 1 
HETATM 30 C C2D HEM . . . C 2 11.248 7.317 33.281 1 50.08 ? C2D HEM 500 A 1 
HETATM 31 C C3D HEM . . . C 2 10.901 7.912 34.65 1 51.35 ? C3D HEM 500 A 1 
HETATM 32 C C4D HEM . . . C 2 9.496 8.247 34.561 1 49.99 ? C4D HEM 500 A 1 
HETATM 33 C CMD HEM . . . C 2 12.636 6.795 32.818 1 49.93 ? CMD HEM 500 A 1 
HETATM 34 C CAD HEM . . . C 2 11.844 8.107 35.87 1 53.61 ? CAD HEM 500 A 1 
HETATM 35 C CBD HEM . . . C 2 13.205 8.677 35.465 1 56.16 ? CBD HEM 500 A 1 
HETATM 36 C CGD HEM . . . C 2 13.903 9.165 36.711 1 58.38 ? CGD HEM 500 A 1 
HETATM 37 O O1D HEM . . . C 2 14.768 8.426 37.265 1 59.85 ? O1D HEM 500 A 1 
HETATM 38 O O2D HEM . . . C 2 13.588 10.3 37.159 1 58.57 ? O2D HEM 500 A 1 
HETATM 39 N NA HEM . . . C 2 6.499 8.692 34.677 1 48.77 ? NA HEM 500 A 1 
HETATM 40 N NB HEM . . . C 2 4.953 8.253 32.323 1 48.25 ? NB HEM 500 A 1 
HETATM 41 N NC HEM . . . C 2 7.408 7.38 31.038 1 46.57 ? NC HEM 500 A 1 
HETATM 42 N ND HEM . . . C 2 9.008 7.906 33.319 1 48.64 ? ND HEM 500 A 1 
HETATM 43 FE FE HEM . . . C 2 6.983 8.029 32.821 1 48.28 ? FE HEM 500 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#