data_3N6C # _model_server_result.job_id CdThzyPkarZ9HJt8b0z3yw _model_server_result.datetime_utc '2024-11-23 11:46:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n6c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":500}' # _entry.id 3N6C # _exptl.entry_id 3N6C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3N6C _cell.length_a 58.142 _cell.length_b 105.691 _cell.length_c 159.211 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 58 A CYS 96 1_555 P ZN ZN . B ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc2 A SG CYS 63 A CYS 101 1_555 P ZN ZN . B ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc3 A SG CYS 148 A CYS 186 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc4 B SG CYS 58 B CYS 96 1_555 P ZN ZN . B ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 192 n n CHA C4D HEM doub 193 n n CHA HHA HEM sing 194 n n CHB C4A HEM sing 195 n n CHB C1B HEM doub 196 n n CHB HHB HEM sing 197 n n CHC C4B HEM sing 198 n n CHC C1C HEM doub 199 n n CHC HHC HEM sing 200 n n CHD C4C HEM doub 201 n n CHD C1D HEM sing 202 n n CHD HHD HEM sing 203 n n C1A C2A HEM doub 204 n y C1A NA HEM sing 205 n y C2A C3A HEM sing 206 n y C2A CAA HEM sing 207 n n C3A C4A HEM doub 208 n y C3A CMA HEM sing 209 n n C4A NA HEM sing 210 n y CMA HMA HEM sing 211 n n CMA HMAA HEM sing 212 n n CMA HMAB HEM sing 213 n n CAA CBA HEM sing 214 n n CAA HAA HEM sing 215 n n CAA HAAA HEM sing 216 n n CBA CGA HEM sing 217 n n CBA HBA HEM sing 218 n n CBA HBAA HEM sing 219 n n CGA O1A HEM doub 220 n n CGA O2A HEM sing 221 n n C1B C2B HEM sing 222 n n C1B NB HEM sing 223 n n C2B C3B HEM doub 224 n n C2B CMB HEM sing 225 n n C3B C4B HEM sing 226 n n C3B CAB HEM sing 227 n n C4B NB HEM doub 228 n n CMB HMB HEM sing 229 n n CMB HMBA HEM sing 230 n n CMB HMBB HEM sing 231 n n CAB CBB HEM doub 232 n n CAB HAB HEM sing 233 n n CBB HBB HEM sing 234 n n CBB HBBA HEM sing 235 n n C1C C2C HEM sing 236 n y C1C NC HEM sing 237 n y C2C C3C HEM doub 238 n y C2C CMC HEM sing 239 n n C3C C4C HEM sing 240 n y C3C CAC HEM sing 241 n n C4C NC HEM sing 242 n y CMC HMC HEM sing 243 n n CMC HMCA HEM sing 244 n n CMC HMCB HEM sing 245 n n CAC CBC HEM doub 246 n n CAC HAC HEM sing 247 n n CBC HBC HEM sing 248 n n CBC HBCA HEM sing 249 n n C1D C2D HEM sing 250 n n C1D ND HEM doub 251 n n C2D C3D HEM doub 252 n n C2D CMD HEM sing 253 n n C3D C4D HEM sing 254 n n C3D CAD HEM sing 255 n n C4D ND HEM sing 256 n n CMD HMD HEM sing 257 n n CMD HMDA HEM sing 258 n n CMD HMDB HEM sing 259 n n CAD CBD HEM sing 260 n n CAD HAD HEM sing 261 n n CAD HADA HEM sing 262 n n CBD CGD HEM sing 263 n n CBD HBD HEM sing 264 n n CBD HBDA HEM sing 265 n n CGD O1D HEM doub 266 n n CGD O2D HEM sing 267 n n O2A H2A HEM sing 268 n n O2D H2D HEM sing 269 n n FE NA HEM sing 270 n n FE NB HEM sing 271 n n FE NC HEM sing 272 n n FE ND HEM sing 273 n n # _atom_sites.entry_id 3N6C _atom_sites.fract_transf_matrix[1][1] 0.017199 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009462 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 H4B A 1 600 600 H4B H4B . E 4 ACT A 1 860 860 ACT ACT . F 5 GOL A 1 880 880 GOL GOL . G 6 CAD A 1 950 950 CAD CAD . H 7 XFM A 1 800 800 XFM XFM . I 2 HEM B 1 500 500 HEM HEM . J 3 H4B B 1 600 600 H4B H4B . K 4 ACT B 1 850 850 ACT ACT . L 4 ACT B 1 860 860 ACT ACT . M 5 GOL B 1 880 880 GOL GOL . N 6 CAD B 1 950 950 CAD CAD . O 7 XFM B 1 800 800 XFM XFM . P 8 ZN B 1 900 900 ZN ZN . Q 9 HOH A 1 1001 1001 HOH HOH . Q 9 HOH A 2 1002 1002 HOH HOH . Q 9 HOH A 3 1003 1003 HOH HOH . Q 9 HOH A 4 1004 1004 HOH HOH . Q 9 HOH A 5 1005 1005 HOH HOH . Q 9 HOH A 6 1006 1006 HOH HOH . Q 9 HOH A 7 1007 1007 HOH HOH . Q 9 HOH A 8 1008 1008 HOH HOH . Q 9 HOH A 9 1009 1009 HOH HOH . Q 9 HOH A 10 1010 1010 HOH HOH . Q 9 HOH A 11 1011 1011 HOH HOH . Q 9 HOH A 12 1012 1012 HOH HOH . Q 9 HOH A 13 1013 1013 HOH HOH . R 9 HOH B 1 1014 1014 HOH HOH . R 9 HOH B 2 1015 1015 HOH HOH . R 9 HOH B 3 1016 1016 HOH HOH . R 9 HOH B 4 1017 1017 HOH HOH . R 9 HOH B 5 1018 1018 HOH HOH . R 9 HOH B 6 1019 1019 HOH HOH . R 9 HOH B 7 1020 1020 HOH HOH . R 9 HOH B 8 1021 1021 HOH HOH . R 9 HOH B 9 1022 1022 HOH HOH . R 9 HOH B 10 1023 1023 HOH HOH . R 9 HOH B 11 1024 1024 HOH HOH . R 9 HOH B 12 1025 1025 HOH HOH . R 9 HOH B 13 1026 1026 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . I 2 5.524 6.769 64.718 1 50.07 ? CHA HEM 500 B 1 HETATM 2 C CHB HEM . . . I 2 3.947 11.278 65.302 1 48.71 ? CHB HEM 500 B 1 HETATM 3 C CHC HEM . . . I 2 4.833 10.967 69.94 1 46.96 ? CHC HEM 500 B 1 HETATM 4 C CHD HEM . . . I 2 6.955 6.714 69.318 1 47.43 ? CHD HEM 500 B 1 HETATM 5 C C1A HEM . . . I 2 4.853 7.943 64.577 1 50.08 ? C1A HEM 500 B 1 HETATM 6 C C2A HEM . . . I 2 3.872 8.209 63.554 1 51.17 ? C2A HEM 500 B 1 HETATM 7 C C3A HEM . . . I 2 3.424 9.436 63.723 1 50.54 ? C3A HEM 500 B 1 HETATM 8 C C4A HEM . . . I 2 4.123 10.002 64.849 1 49.77 ? C4A HEM 500 B 1 HETATM 9 C CMA HEM . . . I 2 2.374 10.143 62.853 1 51.18 ? CMA HEM 500 B 1 HETATM 10 C CAA HEM . . . I 2 3.396 7.227 62.479 1 52.68 ? CAA HEM 500 B 1 HETATM 11 C CBA HEM . . . I 2 2.193 6.523 63.097 1 53.8 ? CBA HEM 500 B 1 HETATM 12 C CGA HEM . . . I 2 1.534 5.693 62.042 1 54.41 ? CGA HEM 500 B 1 HETATM 13 O O1A HEM . . . I 2 1.469 4.443 62.224 1 54.98 ? O1A HEM 500 B 1 HETATM 14 O O2A HEM . . . I 2 1.094 6.298 61.027 1 53.93 ? O2A HEM 500 B 1 HETATM 15 C C1B HEM . . . I 2 3.94 11.569 66.616 1 47.84 ? C1B HEM 500 B 1 HETATM 16 C C2B HEM . . . I 2 3.239 12.651 67.266 1 47.82 ? C2B HEM 500 B 1 HETATM 17 C C3B HEM . . . I 2 3.491 12.548 68.559 1 47.15 ? C3B HEM 500 B 1 HETATM 18 C C4B HEM . . . I 2 4.349 11.402 68.744 1 47.23 ? C4B HEM 500 B 1 HETATM 19 C CMB HEM . . . I 2 2.353 13.719 66.587 1 48.56 ? CMB HEM 500 B 1 HETATM 20 C CAB HEM . . . I 2 2.956 13.483 69.657 1 47.26 ? CAB HEM 500 B 1 HETATM 21 C CBB HEM . . . I 2 3.772 13.944 70.606 1 47.54 ? CBB HEM 500 B 1 HETATM 22 C C1C HEM . . . I 2 5.448 9.769 70.163 1 46.63 ? C1C HEM 500 B 1 HETATM 23 C C2C HEM . . . I 2 5.793 9.264 71.475 1 46.81 ? C2C HEM 500 B 1 HETATM 24 C C3C HEM . . . I 2 6.39 8.082 71.31 1 46.6 ? C3C HEM 500 B 1 HETATM 25 C C4C HEM . . . I 2 6.419 7.819 69.888 1 46.41 ? C4C HEM 500 B 1 HETATM 26 C CMC HEM . . . I 2 5.514 9.975 72.819 1 45.95 ? CMC HEM 500 B 1 HETATM 27 C CAC HEM . . . I 2 6.923 7.155 72.431 1 45.4 ? CAC HEM 500 B 1 HETATM 28 C CBC HEM . . . I 2 8.145 7.267 72.936 1 45.25 ? CBC HEM 500 B 1 HETATM 29 C C1D HEM . . . I 2 6.798 6.348 68.019 1 48.85 ? C1D HEM 500 B 1 HETATM 30 C C2D HEM . . . I 2 7.388 5.167 67.457 1 50.57 ? C2D HEM 500 B 1 HETATM 31 C C3D HEM . . . I 2 6.951 5.152 66.008 1 52.25 ? C3D HEM 500 B 1 HETATM 32 C C4D HEM . . . I 2 6.138 6.348 65.856 1 50.36 ? C4D HEM 500 B 1 HETATM 33 C CMD HEM . . . I 2 8.28 4.131 68.152 1 51.52 ? CMD HEM 500 B 1 HETATM 34 C CAD HEM . . . I 2 7.346 4.07 64.981 1 55.33 ? CAD HEM 500 B 1 HETATM 35 C CBD HEM . . . I 2 6.091 3.552 64.287 1 59.21 ? CBD HEM 500 B 1 HETATM 36 C CGD HEM . . . I 2 6.234 2.084 63.997 1 61.58 ? CGD HEM 500 B 1 HETATM 37 O O1D HEM . . . I 2 7.343 1.662 63.539 1 62.38 ? O1D HEM 500 B 1 HETATM 38 O O2D HEM . . . I 2 5.227 1.357 64.231 1 62.2 ? O2D HEM 500 B 1 HETATM 39 N NA HEM . . . I 2 4.997 9.061 65.36 1 48.65 ? NA HEM 500 B 1 HETATM 40 N NB HEM . . . I 2 4.621 10.822 67.529 1 47.28 ? NB HEM 500 B 1 HETATM 41 N NC HEM . . . I 2 5.839 8.858 69.209 1 46.28 ? NC HEM 500 B 1 HETATM 42 N ND HEM . . . I 2 6.087 7.033 67.048 1 48.36 ? ND HEM 500 B 1 HETATM 43 FE FE HEM . . . I 2 5.395 8.937 67.255 1 48.22 ? FE HEM 500 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #