data_3N6C
#
_model_server_result.job_id            jyR-ZmiQeLj4jt87D3sRkw 
_model_server_result.datetime_utc      '2024-11-13 15:18:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3n6c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":800}' 
#
_entry.id    3N6C 
#
_exptl.entry_id    3N6C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.457 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-(2-{6-[2-(2-amino-6-methylpyridin-4-yl)ethyl]pyridin-2-yl}ethyl)-4-methylpyridin-2-amine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3N6C 
_cell.length_a            58.142 
_cell.length_b            105.691 
_cell.length_c            159.211 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3N6C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 H N N 
? 7 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 58 A CYS 96 1_555 P ZN ZN . B ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? 
metalc ? metalc2 A SG CYS 63 A CYS 101 1_555 P ZN ZN . B ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc3 A SG CYS 148 A CYS 186 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc4 B SG CYS 58 B CYS 96 1_555 P ZN ZN . B ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
#
_chem_comp.formula           'C21 H25 N5' 
_chem_comp.formula_weight    347.457 
_chem_comp.id                XFM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-(2-{6-[2-(2-amino-6-methylpyridin-4-yl)ethyl]pyridin-2-yl}ethyl)-4-methylpyridin-2-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 N1 XFM doub 521 n y 
C2 N1 XFM sing 522 n y 
C3 C2 XFM doub 523 n y 
C2 C7 XFM sing 524 n n 
C4 C3 XFM sing 525 n y 
C3 H3 XFM sing 526 n n 
C25 C4 XFM sing 527 n n 
C4 C5 XFM doub 528 n y 
C5 C6 XFM sing 529 n y 
C5 H5 XFM sing 530 n n 
C6 N26 XFM sing 531 n n 
C7 C8 XFM sing 532 n n 
C7 H7 XFM sing 533 n n 
C7 H7A XFM sing 534 n n 
C9 C8 XFM sing 535 n n 
C8 H8 XFM sing 536 n n 
C8 H8A XFM sing 537 n n 
C14 C9 XFM doub 538 n y 
C9 N10 XFM sing 539 n y 
C11 N10 XFM doub 540 n y 
C12 C11 XFM sing 541 n y 
C11 C15 XFM sing 542 n n 
C13 C12 XFM doub 543 n y 
C12 H12 XFM sing 544 n n 
C13 C14 XFM sing 545 n y 
C13 H13 XFM sing 546 n n 
C14 H14 XFM sing 547 n n 
C15 C16 XFM sing 548 n n 
C15 H15 XFM sing 549 n n 
C15 H15A XFM sing 550 n n 
C16 C17 XFM sing 551 n n 
C16 H16 XFM sing 552 n n 
C16 H16A XFM sing 553 n n 
C18 C17 XFM doub 554 n y 
C17 C22 XFM sing 555 n y 
C18 C19 XFM sing 556 n y 
C18 H18 XFM sing 557 n n 
C24 C19 XFM sing 558 n n 
C19 N20 XFM doub 559 n y 
N20 C21 XFM sing 560 n y 
C22 C21 XFM doub 561 n y 
C21 N23 XFM sing 562 n n 
C22 H22 XFM sing 563 n n 
N23 HN23 XFM sing 564 n n 
N23 HN2A XFM sing 565 n n 
C24 H24 XFM sing 566 n n 
C24 H24A XFM sing 567 n n 
C24 H24B XFM sing 568 n n 
C25 H25 XFM sing 569 n n 
C25 H25A XFM sing 570 n n 
C25 H25B XFM sing 571 n n 
N26 HN26 XFM sing 572 n n 
N26 HN2B XFM sing 573 n n 
#
_atom_sites.entry_id                     3N6C 
_atom_sites.fract_transf_matrix[1][1]    0.017199 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009462 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006281 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 500 500 HEM HEM . 
D 3 H4B A 1 600 600 H4B H4B . 
E 4 ACT A 1 860 860 ACT ACT . 
F 5 GOL A 1 880 880 GOL GOL . 
G 6 CAD A 1 950 950 CAD CAD . 
H 7 XFM A 1 800 800 XFM XFM . 
I 2 HEM B 1 500 500 HEM HEM . 
J 3 H4B B 1 600 600 H4B H4B . 
K 4 ACT B 1 850 850 ACT ACT . 
L 4 ACT B 1 860 860 ACT ACT . 
M 5 GOL B 1 880 880 GOL GOL . 
N 6 CAD B 1 950 950 CAD CAD . 
O 7 XFM B 1 800 800 XFM XFM . 
P 8 ZN B 1 900 900 ZN ZN . 
Q 9 HOH A 1 1001 1001 HOH HOH . 
Q 9 HOH A 2 1002 1002 HOH HOH . 
Q 9 HOH A 3 1003 1003 HOH HOH . 
Q 9 HOH A 4 1004 1004 HOH HOH . 
Q 9 HOH A 5 1005 1005 HOH HOH . 
Q 9 HOH A 6 1006 1006 HOH HOH . 
Q 9 HOH A 7 1007 1007 HOH HOH . 
Q 9 HOH A 8 1008 1008 HOH HOH . 
Q 9 HOH A 9 1009 1009 HOH HOH . 
Q 9 HOH A 10 1010 1010 HOH HOH . 
Q 9 HOH A 11 1011 1011 HOH HOH . 
Q 9 HOH A 12 1012 1012 HOH HOH . 
Q 9 HOH A 13 1013 1013 HOH HOH . 
R 9 HOH B 1 1014 1014 HOH HOH . 
R 9 HOH B 2 1015 1015 HOH HOH . 
R 9 HOH B 3 1016 1016 HOH HOH . 
R 9 HOH B 4 1017 1017 HOH HOH . 
R 9 HOH B 5 1018 1018 HOH HOH . 
R 9 HOH B 6 1019 1019 HOH HOH . 
R 9 HOH B 7 1020 1020 HOH HOH . 
R 9 HOH B 8 1021 1021 HOH HOH . 
R 9 HOH B 9 1022 1022 HOH HOH . 
R 9 HOH B 10 1023 1023 HOH HOH . 
R 9 HOH B 11 1024 1024 HOH HOH . 
R 9 HOH B 12 1025 1025 HOH HOH . 
R 9 HOH B 13 1026 1026 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 XFM . . . O 7 0.152 8.286 67.111 1 69.79 ? N1 XFM 800 B 1 
HETATM 2 C C2 XFM . . . O 7 0.288 7.039 67.629 1 70.41 ? C2 XFM 800 B 1 
HETATM 3 C C3 XFM . . . O 7 1.108 6.854 68.731 1 69.59 ? C3 XFM 800 B 1 
HETATM 4 C C4 XFM . . . O 7 1.787 7.929 69.282 1 68.84 ? C4 XFM 800 B 1 
HETATM 5 C C5 XFM . . . O 7 1.635 9.197 68.734 1 68.89 ? C5 XFM 800 B 1 
HETATM 6 C C6 XFM . . . O 7 0.8 9.356 67.632 1 69.19 ? C6 XFM 800 B 1 
HETATM 7 C C7 XFM . . . O 7 -0.448 5.846 67.046 1 71.73 ? C7 XFM 800 B 1 
HETATM 8 C C8 XFM . . . O 7 0.149 5.403 65.719 1 74.09 ? C8 XFM 800 B 1 
HETATM 9 C C9 XFM . . . O 7 1.28 4.447 66.007 1 77.03 ? C9 XFM 800 B 1 
HETATM 10 N N10 XFM . . . O 7 1.071 3.108 65.916 1 78.71 ? N10 XFM 800 B 1 
HETATM 11 C C11 XFM . . . O 7 2.077 2.219 66.169 1 79.75 ? C11 XFM 800 B 1 
HETATM 12 C C12 XFM . . . O 7 3.347 2.672 66.536 1 79.13 ? C12 XFM 800 B 1 
HETATM 13 C C13 XFM . . . O 7 3.581 4.042 66.637 1 78.51 ? C13 XFM 800 B 1 
HETATM 14 C C14 XFM . . . O 7 2.543 4.933 66.366 1 77.78 ? C14 XFM 800 B 1 
HETATM 15 C C15 XFM . . . O 7 1.825 0.73 66.067 1 80.6 ? C15 XFM 800 B 1 
HETATM 16 C C16 XFM . . . O 7 1.684 0.319 64.605 1 81.84 ? C16 XFM 800 B 1 
HETATM 17 C C17 XFM . . . O 7 1.512 -1.181 64.494 1 82.65 ? C17 XFM 800 B 1 
HETATM 18 C C18 XFM . . . O 7 2.579 -1.969 64.062 1 83.41 ? C18 XFM 800 B 1 
HETATM 19 C C19 XFM . . . O 7 2.415 -3.351 63.959 1 83.66 ? C19 XFM 800 B 1 
HETATM 20 N N20 XFM . . . O 7 1.216 -3.918 64.274 1 83.43 ? N20 XFM 800 B 1 
HETATM 21 C C21 XFM . . . O 7 0.165 -3.17 64.694 1 82.43 ? C21 XFM 800 B 1 
HETATM 22 C C22 XFM . . . O 7 0.294 -1.787 64.81 1 82.58 ? C22 XFM 800 B 1 
HETATM 23 N N23 XFM . . . O 7 -1.008 -3.769 65 1 81.93 ? N23 XFM 800 B 1 
HETATM 24 C C24 XFM . . . O 7 3.563 -4.206 63.49 1 82.37 ? C24 XFM 800 B 1 
HETATM 25 C C25 XFM . . . O 7 2.678 7.695 70.469 1 68.56 ? C25 XFM 800 B 1 
HETATM 26 N N26 XFM . . . O 7 0.633 10.582 67.078 1 68.86 ? N26 XFM 800 B 1 
#
_model_server_stats.io_time_ms              117 
_model_server_stats.parse_time_ms           117 
_model_server_stats.create_model_time_ms    53 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           26 
#