data_3N6D
#
_model_server_result.job_id            Qr4rAGRGVXdIeCXggH0Dqw 
_model_server_result.datetime_utc      '2024-11-13 15:34:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3n6d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":600}' 
#
_entry.id    3N6D 
#
_exptl.entry_id    3N6D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              241.247 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5,6,7,8-TETRAHYDROBIOPTERIN 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3N6D 
_cell.length_a            57.224 
_cell.length_b            106.669 
_cell.length_c            156.785 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3N6D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 58 A CYS 96 1_555 G ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc2 A SG CYS 63 A CYS 101 1_555 G ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc3 A SG CYS 148 A CYS 186 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc4 G ZN ZN . A ZN 900 1_555 B SG CYS 58 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
#
_chem_comp.formula           'C9 H15 N5 O3' 
_chem_comp.formula_weight    241.247 
_chem_comp.id                H4B 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5,6,7,8-TETRAHYDROBIOPTERIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 H4B doub 140 n y 
N1 C8A H4B sing 141 n y 
C2 N2 H4B sing 142 n n 
C2 N3 H4B sing 143 n y 
N2 HN21 H4B sing 144 n n 
N2 HN22 H4B sing 145 n n 
N3 C4 H4B sing 146 n y 
N3 HN3 H4B sing 147 n n 
C4 O4 H4B doub 148 n n 
C4 C4A H4B sing 149 n y 
C4A C8A H4B doub 150 n y 
C4A N5 H4B sing 151 n n 
C8A N8 H4B sing 152 n n 
N5 C6 H4B sing 153 n n 
N5 HN5 H4B sing 154 n n 
N8 C7 H4B sing 155 n n 
N8 HN8 H4B sing 156 n n 
C6 C7 H4B sing 157 n n 
C6 C9 H4B sing 158 n n 
C6 H6 H4B sing 159 n n 
C7 H71 H4B sing 160 n n 
C7 H72 H4B sing 161 n n 
C9 O9 H4B sing 162 n n 
C9 C10 H4B sing 163 n n 
C9 H9 H4B sing 164 n n 
O9 HO9 H4B sing 165 n n 
C10 C11 H4B sing 166 n n 
C10 O10 H4B sing 167 n n 
C10 H10 H4B sing 168 n n 
C11 H111 H4B sing 169 n n 
C11 H112 H4B sing 170 n n 
C11 H113 H4B sing 171 n n 
O10 HO0 H4B sing 172 n n 
#
_atom_sites.entry_id                     3N6D 
_atom_sites.fract_transf_matrix[1][1]    0.017475 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009375 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006378 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 500 500 HEM HEM . 
D 3 H4B A 1 600 600 H4B H4B . 
E 4 CAD A 1 950 950 CAD CAD . 
F 5 XFN A 1 800 800 XFN XFN . 
G 6 ZN A 1 900 900 ZN ZN . 
H 2 HEM B 1 500 500 HEM HEM . 
I 3 H4B B 1 600 600 H4B H4B . 
J 4 CAD B 1 950 950 CAD CAD . 
K 5 XFN B 1 800 800 XFN XFN . 
L 7 HOH A 1 1001 1001 HOH HOH . 
L 7 HOH A 2 1002 1002 HOH HOH . 
L 7 HOH A 3 1003 1003 HOH HOH . 
L 7 HOH A 4 1004 1004 HOH HOH . 
L 7 HOH A 5 1005 1005 HOH HOH . 
L 7 HOH A 6 1006 1006 HOH HOH . 
L 7 HOH A 7 1007 1007 HOH HOH . 
L 7 HOH A 8 1008 1008 HOH HOH . 
L 7 HOH A 9 1009 1009 HOH HOH . 
L 7 HOH A 10 1010 1010 HOH HOH . 
L 7 HOH A 11 1011 1011 HOH HOH . 
L 7 HOH A 12 1012 1012 HOH HOH . 
L 7 HOH A 13 1013 1013 HOH HOH . 
M 7 HOH B 1 1014 1014 HOH HOH . 
M 7 HOH B 2 1015 1015 HOH HOH . 
M 7 HOH B 3 1016 1016 HOH HOH . 
M 7 HOH B 4 1017 1017 HOH HOH . 
M 7 HOH B 5 1018 1018 HOH HOH . 
M 7 HOH B 6 1019 1019 HOH HOH . 
M 7 HOH B 7 1020 1020 HOH HOH . 
M 7 HOH B 8 1021 1021 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 H4B . . . D 3 8.012 12.135 42.897 1 93.43 ? N1 H4B 600 A 1 
HETATM 2 C C2 H4B . . . D 3 7.84 12.582 41.626 1 93.75 ? C2 H4B 600 A 1 
HETATM 3 N N2 H4B . . . D 3 6.801 12.097 40.894 1 92.58 ? N2 H4B 600 A 1 
HETATM 4 N N3 H4B . . . D 3 8.707 13.509 41.103 1 94.02 ? N3 H4B 600 A 1 
HETATM 5 C C4 H4B . . . D 3 9.765 14.01 41.815 1 93.05 ? C4 H4B 600 A 1 
HETATM 6 O O4 H4B . . . D 3 10.547 14.867 41.302 1 91.08 ? O4 H4B 600 A 1 
HETATM 7 C C4A H4B . . . D 3 9.93 13.542 43.126 1 92.42 ? C4A H4B 600 A 1 
HETATM 8 C C8A H4B . . . D 3 9.042 12.6 43.648 1 91.97 ? C8A H4B 600 A 1 
HETATM 9 N N5 H4B . . . D 3 10.936 13.974 43.917 1 91.22 ? N5 H4B 600 A 1 
HETATM 10 N N8 H4B . . . D 3 9.197 12.13 44.908 1 90.27 ? N8 H4B 600 A 1 
HETATM 11 C C6 H4B . . . D 3 11.405 13.137 45.009 1 88.53 ? C6 H4B 600 A 1 
HETATM 12 C C7 H4B . . . D 3 10.248 12.561 45.818 1 88.95 ? C7 H4B 600 A 1 
HETATM 13 C C9 H4B . . . D 3 12.349 13.973 45.859 1 86.13 ? C9 H4B 600 A 1 
HETATM 14 O O9 H4B . . . D 3 12.095 15.354 45.605 1 83.6 ? O9 H4B 600 A 1 
HETATM 15 C C10 H4B . . . D 3 12.235 13.687 47.346 1 85.82 ? C10 H4B 600 A 1 
HETATM 16 C C11 H4B . . . D 3 13.079 14.68 48.126 1 86.09 ? C11 H4B 600 A 1 
HETATM 17 O O10 H4B . . . D 3 12.721 12.368 47.627 1 86.46 ? O10 H4B 600 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           17 
#