data_3N6D # _model_server_result.job_id hMWzeHTag3z4ktvzjHJSkA _model_server_result.datetime_utc '2024-11-28 04:59:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n6d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":600}' # _entry.id 3N6D # _exptl.entry_id 3N6D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3N6D _cell.length_a 57.224 _cell.length_b 106.669 _cell.length_c 156.785 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 58 A CYS 96 1_555 G ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc2 A SG CYS 63 A CYS 101 1_555 G ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc3 A SG CYS 148 A CYS 186 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc4 G ZN ZN . A ZN 900 1_555 B SG CYS 58 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 140 n y N1 C8A H4B sing 141 n y C2 N2 H4B sing 142 n n C2 N3 H4B sing 143 n y N2 HN21 H4B sing 144 n n N2 HN22 H4B sing 145 n n N3 C4 H4B sing 146 n y N3 HN3 H4B sing 147 n n C4 O4 H4B doub 148 n n C4 C4A H4B sing 149 n y C4A C8A H4B doub 150 n y C4A N5 H4B sing 151 n n C8A N8 H4B sing 152 n n N5 C6 H4B sing 153 n n N5 HN5 H4B sing 154 n n N8 C7 H4B sing 155 n n N8 HN8 H4B sing 156 n n C6 C7 H4B sing 157 n n C6 C9 H4B sing 158 n n C6 H6 H4B sing 159 n n C7 H71 H4B sing 160 n n C7 H72 H4B sing 161 n n C9 O9 H4B sing 162 n n C9 C10 H4B sing 163 n n C9 H9 H4B sing 164 n n O9 HO9 H4B sing 165 n n C10 C11 H4B sing 166 n n C10 O10 H4B sing 167 n n C10 H10 H4B sing 168 n n C11 H111 H4B sing 169 n n C11 H112 H4B sing 170 n n C11 H113 H4B sing 171 n n O10 HO0 H4B sing 172 n n # _atom_sites.entry_id 3N6D _atom_sites.fract_transf_matrix[1][1] 0.017475 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009375 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006378 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 H4B A 1 600 600 H4B H4B . E 4 CAD A 1 950 950 CAD CAD . F 5 XFN A 1 800 800 XFN XFN . G 6 ZN A 1 900 900 ZN ZN . H 2 HEM B 1 500 500 HEM HEM . I 3 H4B B 1 600 600 H4B H4B . J 4 CAD B 1 950 950 CAD CAD . K 5 XFN B 1 800 800 XFN XFN . L 7 HOH A 1 1001 1001 HOH HOH . L 7 HOH A 2 1002 1002 HOH HOH . L 7 HOH A 3 1003 1003 HOH HOH . L 7 HOH A 4 1004 1004 HOH HOH . L 7 HOH A 5 1005 1005 HOH HOH . L 7 HOH A 6 1006 1006 HOH HOH . L 7 HOH A 7 1007 1007 HOH HOH . L 7 HOH A 8 1008 1008 HOH HOH . L 7 HOH A 9 1009 1009 HOH HOH . L 7 HOH A 10 1010 1010 HOH HOH . L 7 HOH A 11 1011 1011 HOH HOH . L 7 HOH A 12 1012 1012 HOH HOH . L 7 HOH A 13 1013 1013 HOH HOH . M 7 HOH B 1 1014 1014 HOH HOH . M 7 HOH B 2 1015 1015 HOH HOH . M 7 HOH B 3 1016 1016 HOH HOH . M 7 HOH B 4 1017 1017 HOH HOH . M 7 HOH B 5 1018 1018 HOH HOH . M 7 HOH B 6 1019 1019 HOH HOH . M 7 HOH B 7 1020 1020 HOH HOH . M 7 HOH B 8 1021 1021 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . I 3 1.859 7.465 55.815 1 115.87 ? N1 H4B 600 B 1 HETATM 2 C C2 H4B . . . I 3 1.072 7.687 56.898 1 115.65 ? C2 H4B 600 B 1 HETATM 3 N N2 H4B . . . I 3 0.795 8.973 57.263 1 114.93 ? N2 H4B 600 B 1 HETATM 4 N N3 H4B . . . I 3 0.584 6.608 57.589 1 115.42 ? N3 H4B 600 B 1 HETATM 5 C C4 H4B . . . I 3 0.869 5.319 57.221 1 114.08 ? C4 H4B 600 B 1 HETATM 6 O O4 H4B . . . I 3 0.407 4.347 57.868 1 113.84 ? O4 H4B 600 B 1 HETATM 7 C C4A H4B . . . I 3 1.667 5.09 56.108 1 113.26 ? C4A H4B 600 B 1 HETATM 8 C C8A H4B . . . I 3 2.157 6.192 55.416 1 114.22 ? C8A H4B 600 B 1 HETATM 9 N N5 H4B . . . I 3 1.965 3.834 55.693 1 111.25 ? N5 H4B 600 B 1 HETATM 10 N N8 H4B . . . I 3 2.944 6.017 54.328 1 112.95 ? N8 H4B 600 B 1 HETATM 11 C C6 H4B . . . I 3 3.049 3.568 54.757 1 109.16 ? C6 H4B 600 B 1 HETATM 12 C C7 H4B . . . I 3 3.323 4.72 53.788 1 110.85 ? C7 H4B 600 B 1 HETATM 13 C C9 H4B . . . I 3 2.79 2.289 53.967 1 106.53 ? C9 H4B 600 B 1 HETATM 14 O O9 H4B . . . I 3 1.448 2.336 53.489 1 104.59 ? O9 H4B 600 B 1 HETATM 15 C C10 H4B . . . I 3 3.748 2.142 52.78 1 106.01 ? C10 H4B 600 B 1 HETATM 16 C C11 H4B . . . I 3 3.443 0.909 51.942 1 105.88 ? C11 H4B 600 B 1 HETATM 17 O O10 H4B . . . I 3 5.122 2.09 53.203 1 106.6 ? O10 H4B 600 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 50 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #