data_3N6D # _model_server_result.job_id CPgjoqoO23ghAfn9-KvYfA _model_server_result.datetime_utc '2024-11-24 12:07:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n6d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":800}' # _entry.id 3N6D # _exptl.entry_id 3N6D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 361.483 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "6,6'-[(5-aminobenzene-1,3-diyl)diethane-2,1-diyl]bis(4-methylpyridin-2-amine)" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3N6D _cell.length_a 57.224 _cell.length_b 106.669 _cell.length_c 156.785 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 58 A CYS 96 1_555 G ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc2 A SG CYS 63 A CYS 101 1_555 G ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc3 A SG CYS 148 A CYS 186 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc4 G ZN ZN . A ZN 900 1_555 B SG CYS 58 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? # _chem_comp.formula 'C22 H27 N5' _chem_comp.formula_weight 361.483 _chem_comp.id XFN _chem_comp.mon_nstd_flag . _chem_comp.name "6,6'-[(5-aminobenzene-1,3-diyl)diethane-2,1-diyl]bis(4-methylpyridin-2-amine)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C06 C01 XFN doub 502 n y C01 C02 XFN sing 503 n y C01 H01 XFN sing 504 n n C02 C03 XFN doub 505 n y C02 N02 XFN sing 506 n n N02 HN02 XFN sing 507 n n N02 HN0A XFN sing 508 n n C04 C03 XFN sing 509 n y C03 H03 XFN sing 510 n n C05 C04 XFN doub 511 n y C04 C07 XFN sing 512 n n C06 C05 XFN sing 513 n y C05 H05 XFN sing 514 n n C08 C06 XFN sing 515 n n C34 C07 XFN sing 516 n n C07 H07 XFN sing 517 n n C07 H07A XFN sing 518 n n C09 C08 XFN sing 519 n n C08 H08 XFN sing 520 n n C08 H08A XFN sing 521 n n C09 C13 XFN sing 522 n n C09 H09 XFN sing 523 n n C09 H09A XFN sing 524 n n N12 C11 XFN doub 525 n y N17 C11 XFN sing 526 n n C11 C16 XFN sing 527 n y N12 C13 XFN sing 528 n y C13 C14 XFN doub 529 n y C14 C15 XFN sing 530 n y C14 H14 XFN sing 531 n n C16 C15 XFN doub 532 n y C15 C18 XFN sing 533 n n C16 H16 XFN sing 534 n n N17 HN17 XFN sing 535 n n N17 HN1A XFN sing 536 n n C18 H18 XFN sing 537 n n C18 H18A XFN sing 538 n n C18 H18B XFN sing 539 n n C34 C35 XFN sing 540 n n C34 H34 XFN sing 541 n n C34 H34A XFN sing 542 n n N40 C35 XFN doub 543 n y C35 C36 XFN sing 544 n y C36 C37 XFN doub 545 n y C36 H36 XFN sing 546 n n C38 C37 XFN sing 547 n y C37 C42 XFN sing 548 n n C39 C38 XFN doub 549 n y C38 H38 XFN sing 550 n n N40 C39 XFN sing 551 n y N41 C39 XFN sing 552 n n N41 HN41 XFN sing 553 n n N41 HN4A XFN sing 554 n n C42 H42 XFN sing 555 n n C42 H42A XFN sing 556 n n C42 H42B XFN sing 557 n n # _atom_sites.entry_id 3N6D _atom_sites.fract_transf_matrix[1][1] 0.017475 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009375 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006378 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 H4B A 1 600 600 H4B H4B . E 4 CAD A 1 950 950 CAD CAD . F 5 XFN A 1 800 800 XFN XFN . G 6 ZN A 1 900 900 ZN ZN . H 2 HEM B 1 500 500 HEM HEM . I 3 H4B B 1 600 600 H4B H4B . J 4 CAD B 1 950 950 CAD CAD . K 5 XFN B 1 800 800 XFN XFN . L 7 HOH A 1 1001 1001 HOH HOH . L 7 HOH A 2 1002 1002 HOH HOH . L 7 HOH A 3 1003 1003 HOH HOH . L 7 HOH A 4 1004 1004 HOH HOH . L 7 HOH A 5 1005 1005 HOH HOH . L 7 HOH A 6 1006 1006 HOH HOH . L 7 HOH A 7 1007 1007 HOH HOH . L 7 HOH A 8 1008 1008 HOH HOH . L 7 HOH A 9 1009 1009 HOH HOH . L 7 HOH A 10 1010 1010 HOH HOH . L 7 HOH A 11 1011 1011 HOH HOH . L 7 HOH A 12 1012 1012 HOH HOH . L 7 HOH A 13 1013 1013 HOH HOH . M 7 HOH B 1 1014 1014 HOH HOH . M 7 HOH B 2 1015 1015 HOH HOH . M 7 HOH B 3 1016 1016 HOH HOH . M 7 HOH B 4 1017 1017 HOH HOH . M 7 HOH B 5 1018 1018 HOH HOH . M 7 HOH B 6 1019 1019 HOH HOH . M 7 HOH B 7 1020 1020 HOH HOH . M 7 HOH B 8 1021 1021 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 XFN . . . K 5 -0.144 1.707 64.507 1 87.64 ? C01 XFN 800 B 1 HETATM 2 C C02 XFN . . . K 5 -0.824 2.41 65.504 1 85.83 ? C02 XFN 800 B 1 HETATM 3 N N02 XFN . . . K 5 -1.41 1.747 66.524 1 86.47 ? N02 XFN 800 B 1 HETATM 4 C C03 XFN . . . K 5 -0.901 3.794 65.461 1 83.81 ? C03 XFN 800 B 1 HETATM 5 C C04 XFN . . . K 5 -0.302 4.51 64.422 1 81.83 ? C04 XFN 800 B 1 HETATM 6 C C05 XFN . . . K 5 0.389 3.796 63.402 1 85.4 ? C05 XFN 800 B 1 HETATM 7 C C06 XFN . . . K 5 0.455 2.369 63.43 1 88.5 ? C06 XFN 800 B 1 HETATM 8 C C07 XFN . . . K 5 -0.422 6.027 64.525 1 75.86 ? C07 XFN 800 B 1 HETATM 9 C C08 XFN . . . K 5 1.196 1.522 62.382 1 91.56 ? C08 XFN 800 B 1 HETATM 10 C C09 XFN . . . K 5 0.511 0.298 61.718 1 96.03 ? C09 XFN 800 B 1 HETATM 11 C C11 XFN . . . K 5 -1.252 -2.379 63.728 1 102.89 ? C11 XFN 800 B 1 HETATM 12 N N12 XFN . . . K 5 -0.937 -1.267 62.994 1 101.51 ? N12 XFN 800 B 1 HETATM 13 C C13 XFN . . . K 5 0.315 -0.988 62.526 1 99.2 ? C13 XFN 800 B 1 HETATM 14 C C14 XFN . . . K 5 1.338 -1.912 62.794 1 101.04 ? C14 XFN 800 B 1 HETATM 15 C C15 XFN . . . K 5 1.049 -3.073 63.554 1 102.47 ? C15 XFN 800 B 1 HETATM 16 C C16 XFN . . . K 5 -0.249 -3.31 64.02 1 102.75 ? C16 XFN 800 B 1 HETATM 17 N N17 XFN . . . K 5 -2.53 -2.584 64.167 1 102.18 ? N17 XFN 800 B 1 HETATM 18 C C18 XFN . . . K 5 2.102 -4.1 63.896 1 102 ? C18 XFN 800 B 1 HETATM 19 C C34 XFN . . . K 5 0.459 6.407 65.738 1 68.86 ? C34 XFN 800 B 1 HETATM 20 C C35 XFN . . . K 5 0.492 7.809 66.331 1 64.21 ? C35 XFN 800 B 1 HETATM 21 C C36 XFN . . . K 5 0.821 7.917 67.672 1 61.98 ? C36 XFN 800 B 1 HETATM 22 C C37 XFN . . . K 5 0.892 9.164 68.292 1 60.16 ? C37 XFN 800 B 1 HETATM 23 C C38 XFN . . . K 5 0.644 10.321 67.594 1 59.96 ? C38 XFN 800 B 1 HETATM 24 C C39 XFN . . . K 5 0.334 10.184 66.255 1 62.15 ? C39 XFN 800 B 1 HETATM 25 N N40 XFN . . . K 5 0.271 8.96 65.648 1 62.84 ? N40 XFN 800 B 1 HETATM 26 N N41 XFN . . . K 5 0.099 11.322 65.567 1 63.69 ? N41 XFN 800 B 1 HETATM 27 C C42 XFN . . . K 5 1.24 9.264 69.742 1 61.7 ? C42 XFN 800 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 464 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #