data_3N6G # _model_server_result.job_id Q6tWTfRifQOh1rtF4VsSIA _model_server_result.datetime_utc '2024-11-23 09:09:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n6g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":880}' # _entry.id 3N6G # _exptl.entry_id 3N6G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3N6G _cell.length_a 57.742 _cell.length_b 106.414 _cell.length_c 156.889 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N6G _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 58 A CYS 96 1_555 I ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc2 A SG CYS 63 A CYS 101 1_555 I ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc3 A SG CYS 148 A CYS 186 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc4 I ZN ZN . A ZN 900 1_555 B SG CYS 58 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc5 I ZN ZN . A ZN 900 1_555 B SG CYS 63 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc6 B SG CYS 148 B CYS 186 1_555 J FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 146 n n C1 C2 GOL sing 147 n n C1 H11 GOL sing 148 n n C1 H12 GOL sing 149 n n O1 HO1 GOL sing 150 n n C2 O2 GOL sing 151 n n C2 C3 GOL sing 152 n n C2 H2 GOL sing 153 n n O2 HO2 GOL sing 154 n n C3 O3 GOL sing 155 n n C3 H31 GOL sing 156 n n C3 H32 GOL sing 157 n n O3 HO3 GOL sing 158 n n # _atom_sites.entry_id 3N6G _atom_sites.fract_transf_matrix[1][1] 0.017318 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 ACT A 1 860 860 ACT ACT . E 4 GOL A 1 880 880 GOL GOL . F 5 XFK A 1 800 800 XFK XFK . G 6 CAD A 1 950 950 CAD CAD . H 7 H4B A 1 600 600 H4B BH4 . I 8 ZN A 1 900 900 ZN ZN . J 2 HEM B 1 500 500 HEM HEM . K 3 ACT B 1 860 860 ACT ACT . L 4 GOL B 1 880 880 GOL GOL . M 5 XFK B 1 800 800 XFK XFK . N 6 CAD B 1 950 950 CAD CAD . O 7 H4B B 1 600 600 H4B BH4 . P 9 HOH A 1 2 2 HOH HOH . P 9 HOH A 2 5 5 HOH HOH . P 9 HOH A 3 6 6 HOH HOH . P 9 HOH A 4 7 7 HOH HOH . P 9 HOH A 5 8 8 HOH HOH . P 9 HOH A 6 9 9 HOH HOH . P 9 HOH A 7 14 14 HOH HOH . P 9 HOH A 8 15 15 HOH HOH . P 9 HOH A 9 16 16 HOH HOH . P 9 HOH A 10 18 18 HOH HOH . P 9 HOH A 11 20 20 HOH HOH . P 9 HOH A 12 21 21 HOH HOH . P 9 HOH A 13 23 23 HOH HOH . P 9 HOH A 14 25 25 HOH HOH . P 9 HOH A 15 32 32 HOH HOH . P 9 HOH A 16 33 33 HOH HOH . P 9 HOH A 17 34 34 HOH HOH . P 9 HOH A 18 36 36 HOH HOH . P 9 HOH A 19 38 38 HOH HOH . P 9 HOH A 20 483 39 HOH HOH . P 9 HOH A 21 484 40 HOH HOH . P 9 HOH A 22 485 41 HOH HOH . P 9 HOH A 23 486 44 HOH HOH . P 9 HOH A 24 487 48 HOH HOH . P 9 HOH A 25 488 49 HOH HOH . P 9 HOH A 26 489 53 HOH HOH . P 9 HOH A 27 490 54 HOH HOH . P 9 HOH A 28 491 56 HOH HOH . P 9 HOH A 29 492 57 HOH HOH . P 9 HOH A 30 493 60 HOH HOH . P 9 HOH A 31 494 61 HOH HOH . P 9 HOH A 32 495 62 HOH HOH . P 9 HOH A 33 496 63 HOH HOH . P 9 HOH A 34 497 65 HOH HOH . P 9 HOH A 35 498 66 HOH HOH . P 9 HOH A 36 499 68 HOH HOH . P 9 HOH A 37 501 69 HOH HOH . P 9 HOH A 38 502 74 HOH HOH . P 9 HOH A 39 503 75 HOH HOH . P 9 HOH A 40 504 76 HOH HOH . P 9 HOH A 41 505 77 HOH HOH . P 9 HOH A 42 506 78 HOH HOH . P 9 HOH A 43 507 81 HOH HOH . P 9 HOH A 44 508 85 HOH HOH . P 9 HOH A 45 509 86 HOH HOH . P 9 HOH A 46 510 89 HOH HOH . P 9 HOH A 47 511 100 HOH HOH . P 9 HOH A 48 512 102 HOH HOH . P 9 HOH A 49 513 104 HOH HOH . P 9 HOH A 50 514 106 HOH HOH . P 9 HOH A 51 515 108 HOH HOH . P 9 HOH A 52 516 109 HOH HOH . P 9 HOH A 53 517 110 HOH HOH . P 9 HOH A 54 518 111 HOH HOH . P 9 HOH A 55 519 112 HOH HOH . P 9 HOH A 56 520 118 HOH HOH . P 9 HOH A 57 521 120 HOH HOH . P 9 HOH A 58 522 121 HOH HOH . P 9 HOH A 59 523 123 HOH HOH . P 9 HOH A 60 524 124 HOH HOH . P 9 HOH A 61 525 125 HOH HOH . P 9 HOH A 62 526 126 HOH HOH . P 9 HOH A 63 527 128 HOH HOH . P 9 HOH A 64 528 129 HOH HOH . P 9 HOH A 65 529 130 HOH HOH . P 9 HOH A 66 530 131 HOH HOH . P 9 HOH A 67 531 132 HOH HOH . P 9 HOH A 68 532 133 HOH HOH . P 9 HOH A 69 533 137 HOH HOH . P 9 HOH A 70 534 139 HOH HOH . P 9 HOH A 71 535 141 HOH HOH . P 9 HOH A 72 536 142 HOH HOH . P 9 HOH A 73 537 143 HOH HOH . P 9 HOH A 74 538 144 HOH HOH . P 9 HOH A 75 539 146 HOH HOH . P 9 HOH A 76 540 149 HOH HOH . P 9 HOH A 77 541 150 HOH HOH . P 9 HOH A 78 542 152 HOH HOH . P 9 HOH A 79 543 153 HOH HOH . P 9 HOH A 80 544 154 HOH HOH . P 9 HOH A 81 545 159 HOH HOH . P 9 HOH A 82 546 162 HOH HOH . P 9 HOH A 83 547 165 HOH HOH . P 9 HOH A 84 548 167 HOH HOH . P 9 HOH A 85 549 169 HOH HOH . P 9 HOH A 86 550 170 HOH HOH . P 9 HOH A 87 551 176 HOH HOH . P 9 HOH A 88 552 179 HOH HOH . P 9 HOH A 89 553 180 HOH HOH . P 9 HOH A 90 554 181 HOH HOH . P 9 HOH A 91 555 182 HOH HOH . P 9 HOH A 92 556 183 HOH HOH . P 9 HOH A 93 557 184 HOH HOH . P 9 HOH A 94 558 185 HOH HOH . P 9 HOH A 95 559 186 HOH HOH . P 9 HOH A 96 560 187 HOH HOH . P 9 HOH A 97 561 188 HOH HOH . P 9 HOH A 98 562 189 HOH HOH . P 9 HOH A 99 563 190 HOH HOH . P 9 HOH A 100 564 197 HOH HOH . P 9 HOH A 101 565 198 HOH HOH . P 9 HOH A 102 566 201 HOH HOH . P 9 HOH A 103 567 204 HOH HOH . P 9 HOH A 104 568 206 HOH HOH . P 9 HOH A 105 569 208 HOH HOH . P 9 HOH A 106 570 209 HOH HOH . P 9 HOH A 107 571 210 HOH HOH . P 9 HOH A 108 572 211 HOH HOH . P 9 HOH A 109 573 213 HOH HOH . P 9 HOH A 110 574 216 HOH HOH . P 9 HOH A 111 575 223 HOH HOH . P 9 HOH A 112 576 224 HOH HOH . P 9 HOH A 113 577 225 HOH HOH . P 9 HOH A 114 578 227 HOH HOH . P 9 HOH A 115 579 230 HOH HOH . P 9 HOH A 116 580 231 HOH HOH . P 9 HOH A 117 581 232 HOH HOH . P 9 HOH A 118 582 234 HOH HOH . Q 9 HOH B 1 1 1 HOH HOH . Q 9 HOH B 2 3 3 HOH HOH . Q 9 HOH B 3 4 4 HOH HOH . Q 9 HOH B 4 10 10 HOH HOH . Q 9 HOH B 5 11 11 HOH HOH . Q 9 HOH B 6 12 12 HOH HOH . Q 9 HOH B 7 13 13 HOH HOH . Q 9 HOH B 8 17 17 HOH HOH . Q 9 HOH B 9 19 19 HOH HOH . Q 9 HOH B 10 22 22 HOH HOH . Q 9 HOH B 11 24 24 HOH HOH . Q 9 HOH B 12 26 26 HOH HOH . Q 9 HOH B 13 27 27 HOH HOH . Q 9 HOH B 14 28 28 HOH HOH . Q 9 HOH B 15 29 29 HOH HOH . Q 9 HOH B 16 30 30 HOH HOH . Q 9 HOH B 17 31 31 HOH HOH . Q 9 HOH B 18 35 35 HOH HOH . Q 9 HOH B 19 37 37 HOH HOH . Q 9 HOH B 20 483 42 HOH HOH . Q 9 HOH B 21 484 43 HOH HOH . Q 9 HOH B 22 485 45 HOH HOH . Q 9 HOH B 23 486 46 HOH HOH . Q 9 HOH B 24 487 47 HOH HOH . Q 9 HOH B 25 488 50 HOH HOH . Q 9 HOH B 26 489 51 HOH HOH . Q 9 HOH B 27 490 52 HOH HOH . Q 9 HOH B 28 491 55 HOH HOH . Q 9 HOH B 29 492 58 HOH HOH . Q 9 HOH B 30 493 59 HOH HOH . Q 9 HOH B 31 494 64 HOH HOH . Q 9 HOH B 32 495 67 HOH HOH . Q 9 HOH B 33 496 70 HOH HOH . Q 9 HOH B 34 497 71 HOH HOH . Q 9 HOH B 35 498 72 HOH HOH . Q 9 HOH B 36 499 73 HOH HOH . Q 9 HOH B 37 501 79 HOH HOH . Q 9 HOH B 38 502 80 HOH HOH . Q 9 HOH B 39 503 82 HOH HOH . Q 9 HOH B 40 504 83 HOH HOH . Q 9 HOH B 41 505 84 HOH HOH . Q 9 HOH B 42 506 87 HOH HOH . Q 9 HOH B 43 507 88 HOH HOH . Q 9 HOH B 44 508 90 HOH HOH . Q 9 HOH B 45 509 91 HOH HOH . Q 9 HOH B 46 510 92 HOH HOH . Q 9 HOH B 47 511 93 HOH HOH . Q 9 HOH B 48 512 94 HOH HOH . Q 9 HOH B 49 513 95 HOH HOH . Q 9 HOH B 50 514 96 HOH HOH . Q 9 HOH B 51 515 97 HOH HOH . Q 9 HOH B 52 516 98 HOH HOH . Q 9 HOH B 53 517 99 HOH HOH . Q 9 HOH B 54 518 101 HOH HOH . Q 9 HOH B 55 519 103 HOH HOH . Q 9 HOH B 56 520 105 HOH HOH . Q 9 HOH B 57 521 107 HOH HOH . Q 9 HOH B 58 522 113 HOH HOH . Q 9 HOH B 59 523 114 HOH HOH . Q 9 HOH B 60 524 115 HOH HOH . Q 9 HOH B 61 525 116 HOH HOH . Q 9 HOH B 62 526 117 HOH HOH . Q 9 HOH B 63 527 119 HOH HOH . Q 9 HOH B 64 528 122 HOH HOH . Q 9 HOH B 65 529 127 HOH HOH . Q 9 HOH B 66 530 134 HOH HOH . Q 9 HOH B 67 531 135 HOH HOH . Q 9 HOH B 68 532 136 HOH HOH . Q 9 HOH B 69 533 138 HOH HOH . Q 9 HOH B 70 534 140 HOH HOH . Q 9 HOH B 71 535 145 HOH HOH . Q 9 HOH B 72 536 147 HOH HOH . Q 9 HOH B 73 537 148 HOH HOH . Q 9 HOH B 74 538 151 HOH HOH . Q 9 HOH B 75 539 155 HOH HOH . Q 9 HOH B 76 540 156 HOH HOH . Q 9 HOH B 77 541 157 HOH HOH . Q 9 HOH B 78 542 158 HOH HOH . Q 9 HOH B 79 543 160 HOH HOH . Q 9 HOH B 80 544 161 HOH HOH . Q 9 HOH B 81 545 163 HOH HOH . Q 9 HOH B 82 546 164 HOH HOH . Q 9 HOH B 83 547 166 HOH HOH . Q 9 HOH B 84 548 168 HOH HOH . Q 9 HOH B 85 549 171 HOH HOH . Q 9 HOH B 86 550 172 HOH HOH . Q 9 HOH B 87 551 173 HOH HOH . Q 9 HOH B 88 552 174 HOH HOH . Q 9 HOH B 89 553 175 HOH HOH . Q 9 HOH B 90 554 177 HOH HOH . Q 9 HOH B 91 555 178 HOH HOH . Q 9 HOH B 92 556 191 HOH HOH . Q 9 HOH B 93 557 192 HOH HOH . Q 9 HOH B 94 558 193 HOH HOH . Q 9 HOH B 95 559 194 HOH HOH . Q 9 HOH B 96 560 195 HOH HOH . Q 9 HOH B 97 561 196 HOH HOH . Q 9 HOH B 98 562 199 HOH HOH . Q 9 HOH B 99 563 200 HOH HOH . Q 9 HOH B 100 564 202 HOH HOH . Q 9 HOH B 101 565 203 HOH HOH . Q 9 HOH B 102 566 205 HOH HOH . Q 9 HOH B 103 567 207 HOH HOH . Q 9 HOH B 104 568 212 HOH HOH . Q 9 HOH B 105 569 214 HOH HOH . Q 9 HOH B 106 570 215 HOH HOH . Q 9 HOH B 107 571 217 HOH HOH . Q 9 HOH B 108 572 218 HOH HOH . Q 9 HOH B 109 573 219 HOH HOH . Q 9 HOH B 110 574 220 HOH HOH . Q 9 HOH B 111 575 221 HOH HOH . Q 9 HOH B 112 576 222 HOH HOH . Q 9 HOH B 113 577 226 HOH HOH . Q 9 HOH B 114 578 228 HOH HOH . Q 9 HOH B 115 579 229 HOH HOH . Q 9 HOH B 116 580 233 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 13.468 16.203 42.084 1 56.67 ? C1 GOL 880 A 1 HETATM 2 O O1 GOL . . . E 4 13.753 16.536 40.739 1 56.84 ? O1 GOL 880 A 1 HETATM 3 C C2 GOL . . . E 4 12.572 17.268 42.71 1 57.09 ? C2 GOL 880 A 1 HETATM 4 O O2 GOL . . . E 4 11.26 17.18 42.189 1 55.53 ? O2 GOL 880 A 1 HETATM 5 C C3 GOL . . . E 4 13.126 18.675 42.499 1 57.47 ? C3 GOL 880 A 1 HETATM 6 O O3 GOL . . . E 4 12.532 19.563 43.428 1 57.17 ? O3 GOL 880 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #