data_3N6K # _model_server_result.job_id F9ddF3k4Kn9pxKwru1rH5Q _model_server_result.datetime_utc '2024-11-06 02:50:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n6k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3N6K # _exptl.entry_id 3N6K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 269.252 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-(carboxymethyl)-1H-benzo[g]indole-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3N6K _cell.length_a 111.123 _cell.length_b 111.123 _cell.length_c 76.779 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N6K _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 111.123 111.123 38.3895 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H11 N O4' _chem_comp.formula_weight 269.252 _chem_comp.id BFH _chem_comp.mon_nstd_flag . _chem_comp.name '1-(carboxymethyl)-1H-benzo[g]indole-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 O1 BFH sing 70 n n O1 HO1 BFH sing 71 n n O3 C2 BFH doub 72 n n C2 C4 BFH sing 73 n n N5 C4 BFH sing 74 n n C4 H4 BFH sing 75 n n C4 H4A BFH sing 76 n n C6 N5 BFH sing 77 n y C17 N5 BFH sing 78 n y C7 C6 BFH doub 79 n y C18 C6 BFH sing 80 n n C7 C8 BFH sing 81 n y C7 H7 BFH sing 82 n n C9 C8 BFH doub 83 n y C8 C17 BFH sing 84 n y C9 C10 BFH sing 85 n y C9 H9 BFH sing 86 n n C10 C11 BFH doub 87 n y C10 H10 BFH sing 88 n n C11 C16 BFH sing 89 n y C11 C12 BFH sing 90 n y C12 C13 BFH doub 91 n y C12 H12 BFH sing 92 n n C13 C14 BFH sing 93 n y C13 H13 BFH sing 94 n n C15 C14 BFH doub 95 n y C14 H14 BFH sing 96 n n C16 C15 BFH sing 97 n y C15 H15 BFH sing 98 n n C17 C16 BFH doub 99 n y O19 C18 BFH doub 100 n n C18 O20 BFH sing 101 n n O20 HO20 BFH sing 102 n n # _atom_sites.entry_id 3N6K _atom_sites.fract_transf_matrix[1][1] 0.008999 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008999 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013024 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BFH F 1 1 1 BFH BFH . C 3 PO4 F 1 354 1 PO4 PO4 . D 4 HOH F 1 2 2 HOH HOH . D 4 HOH F 2 3 3 HOH HOH . D 4 HOH F 3 355 1 HOH HOH . D 4 HOH F 4 356 4 HOH HOH . D 4 HOH F 5 357 5 HOH HOH . D 4 HOH F 6 358 6 HOH HOH . D 4 HOH F 7 359 7 HOH HOH . D 4 HOH F 8 360 8 HOH HOH . D 4 HOH F 9 361 9 HOH HOH . D 4 HOH F 10 362 10 HOH HOH . D 4 HOH F 11 363 11 HOH HOH . D 4 HOH F 12 364 12 HOH HOH . D 4 HOH F 13 365 13 HOH HOH . D 4 HOH F 14 366 14 HOH HOH . D 4 HOH F 15 367 15 HOH HOH . D 4 HOH F 16 368 16 HOH HOH . D 4 HOH F 17 369 17 HOH HOH . D 4 HOH F 18 370 18 HOH HOH . D 4 HOH F 19 371 19 HOH HOH . D 4 HOH F 20 372 20 HOH HOH . D 4 HOH F 21 373 21 HOH HOH . D 4 HOH F 22 374 22 HOH HOH . D 4 HOH F 23 375 23 HOH HOH . D 4 HOH F 24 376 24 HOH HOH . D 4 HOH F 25 377 25 HOH HOH . D 4 HOH F 26 378 26 HOH HOH . D 4 HOH F 27 379 27 HOH HOH . D 4 HOH F 28 380 28 HOH HOH . D 4 HOH F 29 381 29 HOH HOH . D 4 HOH F 30 382 30 HOH HOH . D 4 HOH F 31 383 31 HOH HOH . D 4 HOH F 32 384 32 HOH HOH . D 4 HOH F 33 385 33 HOH HOH . D 4 HOH F 34 386 34 HOH HOH . D 4 HOH F 35 387 35 HOH HOH . D 4 HOH F 36 388 36 HOH HOH . D 4 HOH F 37 389 37 HOH HOH . D 4 HOH F 38 390 38 HOH HOH . D 4 HOH F 39 391 39 HOH HOH . D 4 HOH F 40 392 40 HOH HOH . D 4 HOH F 41 393 41 HOH HOH . D 4 HOH F 42 394 42 HOH HOH . D 4 HOH F 43 395 43 HOH HOH . D 4 HOH F 44 396 44 HOH HOH . D 4 HOH F 45 397 45 HOH HOH . D 4 HOH F 46 398 46 HOH HOH . D 4 HOH F 47 399 47 HOH HOH . D 4 HOH F 48 400 48 HOH HOH . D 4 HOH F 49 401 49 HOH HOH . D 4 HOH F 50 402 50 HOH HOH . D 4 HOH F 51 403 51 HOH HOH . D 4 HOH F 52 404 52 HOH HOH . D 4 HOH F 53 405 53 HOH HOH . D 4 HOH F 54 406 54 HOH HOH . D 4 HOH F 55 407 55 HOH HOH . D 4 HOH F 56 408 56 HOH HOH . D 4 HOH F 57 409 57 HOH HOH . D 4 HOH F 58 410 58 HOH HOH . D 4 HOH F 59 411 59 HOH HOH . D 4 HOH F 60 412 60 HOH HOH . D 4 HOH F 61 413 61 HOH HOH . D 4 HOH F 62 414 62 HOH HOH . D 4 HOH F 63 415 63 HOH HOH . D 4 HOH F 64 416 64 HOH HOH . D 4 HOH F 65 417 65 HOH HOH . D 4 HOH F 66 418 66 HOH HOH . D 4 HOH F 67 419 67 HOH HOH . D 4 HOH F 68 420 68 HOH HOH . D 4 HOH F 69 421 69 HOH HOH . D 4 HOH F 70 422 70 HOH HOH . D 4 HOH F 71 423 71 HOH HOH . D 4 HOH F 72 424 72 HOH HOH . D 4 HOH F 73 425 73 HOH HOH . D 4 HOH F 74 426 74 HOH HOH . D 4 HOH F 75 427 75 HOH HOH . D 4 HOH F 76 428 76 HOH HOH . D 4 HOH F 77 429 77 HOH HOH . D 4 HOH F 78 430 78 HOH HOH . D 4 HOH F 79 431 79 HOH HOH . D 4 HOH F 80 432 80 HOH HOH . D 4 HOH F 81 433 81 HOH HOH . D 4 HOH F 82 434 82 HOH HOH . D 4 HOH F 83 435 83 HOH HOH . D 4 HOH F 84 436 84 HOH HOH . D 4 HOH F 85 437 85 HOH HOH . D 4 HOH F 86 438 86 HOH HOH . D 4 HOH F 87 439 87 HOH HOH . D 4 HOH F 88 440 88 HOH HOH . D 4 HOH F 89 441 89 HOH HOH . D 4 HOH F 90 442 90 HOH HOH . D 4 HOH F 91 443 91 HOH HOH . D 4 HOH F 92 444 92 HOH HOH . D 4 HOH F 93 445 93 HOH HOH . D 4 HOH F 94 446 94 HOH HOH . D 4 HOH F 95 447 95 HOH HOH . D 4 HOH F 96 448 96 HOH HOH . D 4 HOH F 97 449 97 HOH HOH . D 4 HOH F 98 450 98 HOH HOH . D 4 HOH F 99 451 99 HOH HOH . D 4 HOH F 100 452 100 HOH HOH . D 4 HOH F 101 453 101 HOH HOH . D 4 HOH F 102 454 102 HOH HOH . D 4 HOH F 103 455 103 HOH HOH . D 4 HOH F 104 456 104 HOH HOH . D 4 HOH F 105 457 105 HOH HOH . D 4 HOH F 106 458 106 HOH HOH . D 4 HOH F 107 459 107 HOH HOH . D 4 HOH F 108 460 108 HOH HOH . D 4 HOH F 109 461 109 HOH HOH . D 4 HOH F 110 462 110 HOH HOH . D 4 HOH F 111 463 111 HOH HOH . D 4 HOH F 112 464 112 HOH HOH . D 4 HOH F 113 465 113 HOH HOH . D 4 HOH F 114 466 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 BFH . . . B 2 7.462 74.246 26.999 1 65 ? O1 BFH 1 F 1 HETATM 2 C C2 BFH . . . B 2 6.129 74.072 26.945 1 62.92 ? C2 BFH 1 F 1 HETATM 3 O O3 BFH . . . B 2 5.545 74.165 25.88 1 59.32 ? O3 BFH 1 F 1 HETATM 4 C C4 BFH . . . B 2 5.383 73.767 28.229 1 63.1 ? C4 BFH 1 F 1 HETATM 5 N N5 BFH . . . B 2 3.915 73.932 28.046 1 63.4 ? N5 BFH 1 F 1 HETATM 6 C C6 BFH . . . B 2 3.047 72.856 27.875 1 65.33 ? C6 BFH 1 F 1 HETATM 7 C C7 BFH . . . B 2 1.774 73.309 27.779 1 63.14 ? C7 BFH 1 F 1 HETATM 8 C C8 BFH . . . B 2 1.808 74.709 27.855 1 61.1 ? C8 BFH 1 F 1 HETATM 9 C C9 BFH . . . B 2 0.732 75.648 27.786 1 60.75 ? C9 BFH 1 F 1 HETATM 10 C C10 BFH . . . B 2 0.978 76.987 27.867 1 60.02 ? C10 BFH 1 F 1 HETATM 11 C C11 BFH . . . B 2 2.314 77.481 28.013 1 58.51 ? C11 BFH 1 F 1 HETATM 12 C C12 BFH . . . B 2 2.536 78.879 28.095 1 55.62 ? C12 BFH 1 F 1 HETATM 13 C C13 BFH . . . B 2 3.821 79.367 28.233 1 55.38 ? C13 BFH 1 F 1 HETATM 14 C C14 BFH . . . B 2 4.941 78.508 28.301 1 55.82 ? C14 BFH 1 F 1 HETATM 15 C C15 BFH . . . B 2 4.757 77.131 28.227 1 58.22 ? C15 BFH 1 F 1 HETATM 16 C C16 BFH . . . B 2 3.448 76.553 28.088 1 59.98 ? C16 BFH 1 F 1 HETATM 17 C C17 BFH . . . B 2 3.172 75.119 28.009 1 61.52 ? C17 BFH 1 F 1 HETATM 18 C C18 BFH . . . B 2 3.354 71.42 27.788 1 67.86 ? C18 BFH 1 F 1 HETATM 19 O O19 BFH . . . B 2 3.011 70.765 26.652 1 69.98 ? O19 BFH 1 F 1 HETATM 20 O O20 BFH . . . B 2 3.9 70.837 28.711 1 71.27 ? O20 BFH 1 F 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #