data_3N71 # _model_server_result.job_id sSMQbjuYM-ie30In2TAbLQ _model_server_result.datetime_utc '2024-12-26 23:21:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n71 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":491}' # _entry.id 3N71 # _exptl.entry_id 3N71 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.387 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SINEFUNGIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3N71 _cell.length_a 170.5 _cell.length_b 170.5 _cell.length_c 57.1 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N71 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 52 A CYS 52 1_555 F ZN ZN . A ZN 495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc2 A SG CYS 55 A CYS 55 1_555 F ZN ZN . A ZN 495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc3 A SG CYS 65 A CYS 65 1_555 G ZN ZN . A ZN 496 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc4 A SG CYS 68 A CYS 68 1_555 G ZN ZN . A ZN 496 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc5 A SG CYS 74 A CYS 74 1_555 F ZN ZN . A ZN 495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc6 A SG CYS 78 A CYS 78 1_555 F ZN ZN . A ZN 495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc7 A NE2 HIS 86 A HIS 86 1_555 G ZN ZN . A ZN 496 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc8 A SG CYS 90 A CYS 90 1_555 G ZN ZN . A ZN 496 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc9 A SG CYS 208 A CYS 208 1_555 H ZN ZN . A ZN 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc10 A SG CYS 274 A CYS 274 1_555 H ZN ZN . A ZN 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc11 A SG CYS 276 A CYS 276 1_555 H ZN ZN . A ZN 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc12 A SG CYS 279 A CYS 279 1_555 H ZN ZN . A ZN 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? # _chem_comp.formula 'C15 H23 N7 O5' _chem_comp.formula_weight 381.387 _chem_comp.id SFG _chem_comp.mon_nstd_flag . _chem_comp.name SINEFUNGIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ADENOSYL-ORNITHINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SFG sing 328 n n N HN1 SFG sing 329 n n N HN2 SFG sing 330 n n CA C SFG sing 331 n n CA CB SFG sing 332 n n CA HA SFG sing 333 n n C O SFG doub 334 n n C OXT SFG sing 335 n n OXT HXT SFG sing 336 n n CB CG SFG sing 337 n n CB HB1 SFG sing 338 n n CB HB2 SFG sing 339 n n CG CD SFG sing 340 n n CG HG1 SFG sing 341 n n CG HG2 SFG sing 342 n n CD NE SFG sing 343 n n CD C5' SFG sing 344 n n CD HD SFG sing 345 n n NE HNE1 SFG sing 346 n n NE HNE2 SFG sing 347 n n C5' C4' SFG sing 348 n n C5' "H5'1" SFG sing 349 n n C5' "H5'2" SFG sing 350 n n C4' O4' SFG sing 351 n n C4' C3' SFG sing 352 n n C4' H4' SFG sing 353 n n O4' C1' SFG sing 354 n n C3' O3' SFG sing 355 n n C3' C2' SFG sing 356 n n C3' H3' SFG sing 357 n n O3' HO3' SFG sing 358 n n C2' O2' SFG sing 359 n n C2' C1' SFG sing 360 n n C2' H2' SFG sing 361 n n O2' HO2' SFG sing 362 n n C1' N9 SFG sing 363 n n C1' H1' SFG sing 364 n n N9 C8 SFG sing 365 n y N9 C4 SFG sing 366 n y C8 N7 SFG doub 367 n y C8 H8 SFG sing 368 n n N7 C5 SFG sing 369 n y C5 C6 SFG sing 370 n y C5 C4 SFG doub 371 n y C6 N6 SFG sing 372 n n C6 N1 SFG doub 373 n y N6 HN61 SFG sing 374 n n N6 HN62 SFG sing 375 n n N1 C2 SFG sing 376 n y C2 N3 SFG doub 377 n y C2 H2 SFG sing 378 n n N3 C4 SFG sing 379 n y # _atom_sites.entry_id 3N71 _atom_sites.fract_transf_matrix[1][1] 0.005865 _atom_sites.fract_transf_matrix[1][2] 0.003386 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SFG A 1 491 491 SFG SFG . C 3 MES A 1 492 492 MES MES . D 4 GOL A 1 493 493 GOL GOL . E 4 GOL A 1 494 494 GOL GOL . F 5 ZN A 1 495 495 ZN ZN . G 5 ZN A 1 496 496 ZN ZN . H 5 ZN A 1 497 497 ZN ZN . I 6 HOH A 1 498 498 HOH HOH . I 6 HOH A 2 499 499 HOH HOH . I 6 HOH A 3 500 500 HOH HOH . I 6 HOH A 4 501 501 HOH HOH . I 6 HOH A 5 502 502 HOH HOH . I 6 HOH A 6 503 503 HOH HOH . I 6 HOH A 7 504 504 HOH HOH . I 6 HOH A 8 505 505 HOH HOH . I 6 HOH A 9 506 506 HOH HOH . I 6 HOH A 10 507 507 HOH HOH . I 6 HOH A 11 508 508 HOH HOH . I 6 HOH A 12 509 509 HOH HOH . I 6 HOH A 13 510 510 HOH HOH . I 6 HOH A 14 511 511 HOH HOH . I 6 HOH A 15 512 512 HOH HOH . I 6 HOH A 16 513 513 HOH HOH . I 6 HOH A 17 514 514 HOH HOH . I 6 HOH A 18 515 515 HOH HOH . I 6 HOH A 19 516 516 HOH HOH . I 6 HOH A 20 517 517 HOH HOH . I 6 HOH A 21 518 518 HOH HOH . I 6 HOH A 22 519 519 HOH HOH . I 6 HOH A 23 520 520 HOH HOH . I 6 HOH A 24 521 521 HOH HOH . I 6 HOH A 25 522 522 HOH HOH . I 6 HOH A 26 523 523 HOH HOH . I 6 HOH A 27 524 524 HOH HOH . I 6 HOH A 28 525 525 HOH HOH . I 6 HOH A 29 526 526 HOH HOH . I 6 HOH A 30 527 527 HOH HOH . I 6 HOH A 31 528 528 HOH HOH . I 6 HOH A 32 529 529 HOH HOH . I 6 HOH A 33 530 530 HOH HOH . I 6 HOH A 34 531 531 HOH HOH . I 6 HOH A 35 532 532 HOH HOH . I 6 HOH A 36 533 533 HOH HOH . I 6 HOH A 37 534 534 HOH HOH . I 6 HOH A 38 535 535 HOH HOH . I 6 HOH A 39 536 536 HOH HOH . I 6 HOH A 40 537 537 HOH HOH . I 6 HOH A 41 538 538 HOH HOH . I 6 HOH A 42 539 539 HOH HOH . I 6 HOH A 43 540 540 HOH HOH . I 6 HOH A 44 541 541 HOH HOH . I 6 HOH A 45 542 542 HOH HOH . I 6 HOH A 46 543 543 HOH HOH . I 6 HOH A 47 544 544 HOH HOH . I 6 HOH A 48 545 545 HOH HOH . I 6 HOH A 49 546 546 HOH HOH . I 6 HOH A 50 547 547 HOH HOH . I 6 HOH A 51 548 548 HOH HOH . I 6 HOH A 52 549 549 HOH HOH . I 6 HOH A 53 550 550 HOH HOH . I 6 HOH A 54 551 551 HOH HOH . I 6 HOH A 55 552 552 HOH HOH . I 6 HOH A 56 553 553 HOH HOH . I 6 HOH A 57 554 554 HOH HOH . I 6 HOH A 58 555 555 HOH HOH . I 6 HOH A 59 556 556 HOH HOH . I 6 HOH A 60 557 557 HOH HOH . I 6 HOH A 61 558 558 HOH HOH . I 6 HOH A 62 559 559 HOH HOH . I 6 HOH A 63 560 560 HOH HOH . I 6 HOH A 64 561 561 HOH HOH . I 6 HOH A 65 562 562 HOH HOH . I 6 HOH A 66 563 563 HOH HOH . I 6 HOH A 67 564 564 HOH HOH . I 6 HOH A 68 565 565 HOH HOH . I 6 HOH A 69 566 566 HOH HOH . I 6 HOH A 70 567 567 HOH HOH . I 6 HOH A 71 568 568 HOH HOH . I 6 HOH A 72 569 569 HOH HOH . I 6 HOH A 73 570 570 HOH HOH . I 6 HOH A 74 571 571 HOH HOH . I 6 HOH A 75 572 572 HOH HOH . I 6 HOH A 76 573 573 HOH HOH . I 6 HOH A 77 574 574 HOH HOH . I 6 HOH A 78 575 575 HOH HOH . I 6 HOH A 79 576 576 HOH HOH . I 6 HOH A 80 577 577 HOH HOH . I 6 HOH A 81 578 578 HOH HOH . I 6 HOH A 82 579 579 HOH HOH . I 6 HOH A 83 580 580 HOH HOH . I 6 HOH A 84 581 581 HOH HOH . I 6 HOH A 85 582 582 HOH HOH . I 6 HOH A 86 583 583 HOH HOH . I 6 HOH A 87 584 584 HOH HOH . I 6 HOH A 88 585 585 HOH HOH . I 6 HOH A 89 586 586 HOH HOH . I 6 HOH A 90 587 587 HOH HOH . I 6 HOH A 91 588 588 HOH HOH . I 6 HOH A 92 589 589 HOH HOH . I 6 HOH A 93 590 590 HOH HOH . I 6 HOH A 94 591 591 HOH HOH . I 6 HOH A 95 592 592 HOH HOH . I 6 HOH A 96 593 593 HOH HOH . I 6 HOH A 97 594 594 HOH HOH . I 6 HOH A 98 595 595 HOH HOH . I 6 HOH A 99 596 596 HOH HOH . I 6 HOH A 100 597 597 HOH HOH . I 6 HOH A 101 598 598 HOH HOH . I 6 HOH A 102 599 599 HOH HOH . I 6 HOH A 103 600 600 HOH HOH . I 6 HOH A 104 601 601 HOH HOH . I 6 HOH A 105 602 602 HOH HOH . I 6 HOH A 106 603 603 HOH HOH . I 6 HOH A 107 604 604 HOH HOH . I 6 HOH A 108 605 605 HOH HOH . I 6 HOH A 109 606 606 HOH HOH . I 6 HOH A 110 607 607 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SFG . . . B 2 45.342 63.734 31.775 1 48.83 ? N SFG 491 A 1 HETATM 2 C CA SFG . . . B 2 44.463 64.284 30.707 1 55.29 ? CA SFG 491 A 1 HETATM 3 C C SFG . . . B 2 42.916 64.301 30.958 1 60.88 ? C SFG 491 A 1 HETATM 4 O O SFG . . . B 2 42.109 64.488 30.021 1 65.64 ? O SFG 491 A 1 HETATM 5 O OXT SFG . . . B 2 42.466 64.131 32.098 1 59.58 ? OXT SFG 491 A 1 HETATM 6 C CB SFG . . . B 2 44.865 63.505 29.415 1 58.46 ? CB SFG 491 A 1 HETATM 7 C CG SFG . . . B 2 45.885 64.225 28.503 1 52.02 ? CG SFG 491 A 1 HETATM 8 C CD SFG . . . B 2 45.535 65.683 28.03 1 49.86 ? CD SFG 491 A 1 HETATM 9 N NE SFG . . . B 2 45.457 65.686 26.539 1 59.78 ? NE SFG 491 A 1 HETATM 10 C C5' SFG . . . B 2 46.558 66.792 28.327 1 55.91 ? C5' SFG 491 A 1 HETATM 11 C C4' SFG . . . B 2 46.938 67.159 29.792 1 55.6 ? C4' SFG 491 A 1 HETATM 12 O O4' SFG . . . B 2 47.256 66.057 30.674 1 60.12 ? O4' SFG 491 A 1 HETATM 13 C C3' SFG . . . B 2 48.163 68.042 29.884 1 59.1 ? C3' SFG 491 A 1 HETATM 14 O O3' SFG . . . B 2 47.891 69.375 29.504 1 60.79 ? O3' SFG 491 A 1 HETATM 15 C C2' SFG . . . B 2 48.59 67.907 31.329 1 60.6 ? C2' SFG 491 A 1 HETATM 16 O O2' SFG . . . B 2 47.862 68.832 32.155 1 63.05 ? O2' SFG 491 A 1 HETATM 17 C C1' SFG . . . B 2 48.264 66.458 31.633 1 57.01 ? C1' SFG 491 A 1 HETATM 18 N N9 SFG . . . B 2 49.436 65.551 31.525 1 55.02 ? N9 SFG 491 A 1 HETATM 19 C C8 SFG . . . B 2 49.851 64.85 30.395 1 51.8 ? C8 SFG 491 A 1 HETATM 20 N N7 SFG . . . B 2 50.92 64.153 30.616 1 52.15 ? N7 SFG 491 A 1 HETATM 21 C C5 SFG . . . B 2 51.235 64.372 31.965 1 48.32 ? C5 SFG 491 A 1 HETATM 22 C C6 SFG . . . B 2 52.306 63.943 32.837 1 50.64 ? C6 SFG 491 A 1 HETATM 23 N N6 SFG . . . B 2 53.298 63.068 32.498 1 51.32 ? N6 SFG 491 A 1 HETATM 24 N N1 SFG . . . B 2 52.326 64.376 34.155 1 55.84 ? N1 SFG 491 A 1 HETATM 25 C C2 SFG . . . B 2 51.356 65.242 34.546 1 52.74 ? C2 SFG 491 A 1 HETATM 26 N N3 SFG . . . B 2 50.319 65.722 33.82 1 51.28 ? N3 SFG 491 A 1 HETATM 27 C C4 SFG . . . B 2 50.343 65.277 32.522 1 54.58 ? C4 SFG 491 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #