data_3N76 # _model_server_result.job_id sIKv7i4R6GujIJDK4Z4JHQ _model_server_result.datetime_utc '2025-01-02 20:52:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n76 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":147}' # _entry.id 3N76 # _exptl.entry_id 3N76 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 310.342 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S,3R,4R,5S)-1,3,4-TRIHYDROXY-5-(3-PHENOXYPROPYL)CYCLOHEXANECARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3N76 _cell.length_a 126.41 _cell.length_b 126.41 _cell.length_c 126.41 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N76 _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -126.41 -126.41 0 3 'crystal symmetry operation' 3_454 -x-1,y,-z-1 -1 0 0 0 1 0 0 0 -1 -126.41 0 -126.41 4 'crystal symmetry operation' 4_544 x,-y-1,-z-1 1 0 0 0 -1 0 0 0 -1 0 -126.41 -126.41 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_544 z,-x-1,-y-1 0 0 1 -1 0 0 0 -1 0 0 -126.41 -126.41 7 'crystal symmetry operation' 7_445 -z-1,-x-1,y 0 0 -1 -1 0 0 0 1 0 -126.41 -126.41 0 8 'crystal symmetry operation' 8_454 -z-1,x,-y-1 0 0 -1 1 0 0 0 -1 0 -126.41 0 -126.41 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_454 -y-1,z,-x-1 0 -1 0 0 0 1 -1 0 0 -126.41 0 -126.41 11 'crystal symmetry operation' 11_544 y,-z-1,-x-1 0 1 0 0 0 -1 -1 0 0 0 -126.41 -126.41 12 'crystal symmetry operation' 12_445 -y-1,-z-1,x 0 -1 0 0 0 -1 1 0 0 -126.41 -126.41 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H22 O6' _chem_comp.formula_weight 310.342 _chem_comp.id CA2 _chem_comp.mon_nstd_flag . _chem_comp.name '(1S,3R,4R,5S)-1,3,4-TRIHYDROXY-5-(3-PHENOXYPROPYL)CYCLOHEXANECARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '1,3,4-TRIHYDROXY-5-(3-PHENOXYPROPYL)-CYCLOHEXANE-1-CARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C7 CA2 doub 70 n n C7 O1 CA2 sing 71 n n C7 C1 CA2 sing 72 n n O1 H1 CA2 sing 73 n n C1 O3 CA2 sing 74 n n C1 C2 CA2 sing 75 n n C1 C6 CA2 sing 76 n n O3 H3 CA2 sing 77 n n C2 C3 CA2 sing 78 n n C2 H2C1 CA2 sing 79 n n C2 H2C2 CA2 sing 80 n n C3 C4 CA2 sing 81 n n C3 C8 CA2 sing 82 n n C3 HA CA2 sing 83 n n C4 O4 CA2 sing 84 n n C4 C5 CA2 sing 85 n n C4 H4 CA2 sing 86 n n O4 HB CA2 sing 87 n n C5 O5 CA2 sing 88 n n C5 C6 CA2 sing 89 n n C5 H5 CA2 sing 90 n n O5 HC CA2 sing 91 n n C6 H6C1 CA2 sing 92 n n C6 H6C2 CA2 sing 93 n n C8 C9 CA2 sing 94 n n C8 H8C1 CA2 sing 95 n n C8 H8C2 CA2 sing 96 n n C9 C10 CA2 sing 97 n n C9 H9C1 CA2 sing 98 n n C9 H9C2 CA2 sing 99 n n C10 O11 CA2 sing 100 n n C10 H101 CA2 sing 101 n n C10 H102 CA2 sing 102 n n O11 C12 CA2 sing 103 n n C12 C17 CA2 doub 104 n y C12 C13 CA2 sing 105 n y C17 C16 CA2 sing 106 n y C17 H17 CA2 sing 107 n n C16 C15 CA2 doub 108 n y C16 H16 CA2 sing 109 n n C15 C14 CA2 sing 110 n y C15 H15 CA2 sing 111 n n C14 C13 CA2 doub 112 n y C14 H14 CA2 sing 113 n n C13 H13 CA2 sing 114 n n # _atom_sites.entry_id 3N76 _atom_sites.fract_transf_matrix[1][1] 0.007911 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007911 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA2 A 1 147 1 CA2 CA2 . C 3 HOH A 1 148 148 HOH HOH . C 3 HOH A 2 149 149 HOH HOH . C 3 HOH A 3 150 150 HOH HOH . C 3 HOH A 4 151 151 HOH HOH . C 3 HOH A 5 152 1 HOH HOH . C 3 HOH A 6 153 153 HOH HOH . C 3 HOH A 7 154 154 HOH HOH . C 3 HOH A 8 155 155 HOH HOH . C 3 HOH A 9 156 156 HOH HOH . C 3 HOH A 10 157 157 HOH HOH . C 3 HOH A 11 158 158 HOH HOH . C 3 HOH A 12 159 159 HOH HOH . C 3 HOH A 13 160 160 HOH HOH . C 3 HOH A 14 161 161 HOH HOH . C 3 HOH A 15 162 162 HOH HOH . C 3 HOH A 16 163 2 HOH HOH . C 3 HOH A 17 164 164 HOH HOH . C 3 HOH A 18 165 165 HOH HOH . C 3 HOH A 19 166 166 HOH HOH . C 3 HOH A 20 167 3 HOH HOH . C 3 HOH A 21 168 168 HOH HOH . C 3 HOH A 22 169 169 HOH HOH . C 3 HOH A 23 170 170 HOH HOH . C 3 HOH A 24 171 171 HOH HOH . C 3 HOH A 25 172 172 HOH HOH . C 3 HOH A 26 173 173 HOH HOH . C 3 HOH A 27 174 174 HOH HOH . C 3 HOH A 28 175 175 HOH HOH . C 3 HOH A 29 176 176 HOH HOH . C 3 HOH A 30 177 177 HOH HOH . C 3 HOH A 31 178 178 HOH HOH . C 3 HOH A 32 179 179 HOH HOH . C 3 HOH A 33 180 180 HOH HOH . C 3 HOH A 34 181 4 HOH HOH . C 3 HOH A 35 182 5 HOH HOH . C 3 HOH A 36 183 6 HOH HOH . C 3 HOH A 37 184 7 HOH HOH . C 3 HOH A 38 185 8 HOH HOH . C 3 HOH A 39 186 9 HOH HOH . C 3 HOH A 40 187 10 HOH HOH . C 3 HOH A 41 188 11 HOH HOH . C 3 HOH A 42 189 12 HOH HOH . C 3 HOH A 43 190 13 HOH HOH . C 3 HOH A 44 191 14 HOH HOH . C 3 HOH A 45 192 15 HOH HOH . C 3 HOH A 46 193 16 HOH HOH . C 3 HOH A 47 194 17 HOH HOH . C 3 HOH A 48 195 18 HOH HOH . C 3 HOH A 49 196 19 HOH HOH . C 3 HOH A 50 197 20 HOH HOH . C 3 HOH A 51 198 21 HOH HOH . C 3 HOH A 52 199 23 HOH HOH . C 3 HOH A 53 200 24 HOH HOH . C 3 HOH A 54 201 26 HOH HOH . C 3 HOH A 55 202 27 HOH HOH . C 3 HOH A 56 203 28 HOH HOH . C 3 HOH A 57 204 29 HOH HOH . C 3 HOH A 58 205 30 HOH HOH . C 3 HOH A 59 206 31 HOH HOH . C 3 HOH A 60 207 32 HOH HOH . C 3 HOH A 61 208 33 HOH HOH . C 3 HOH A 62 209 34 HOH HOH . C 3 HOH A 63 210 35 HOH HOH . C 3 HOH A 64 211 36 HOH HOH . C 3 HOH A 65 212 37 HOH HOH . C 3 HOH A 66 213 38 HOH HOH . C 3 HOH A 67 214 39 HOH HOH . C 3 HOH A 68 215 40 HOH HOH . C 3 HOH A 69 216 41 HOH HOH . C 3 HOH A 70 217 42 HOH HOH . C 3 HOH A 71 218 43 HOH HOH . C 3 HOH A 72 219 44 HOH HOH . C 3 HOH A 73 220 45 HOH HOH . C 3 HOH A 74 221 46 HOH HOH . C 3 HOH A 75 222 47 HOH HOH . C 3 HOH A 76 223 48 HOH HOH . C 3 HOH A 77 224 49 HOH HOH . C 3 HOH A 78 225 50 HOH HOH . C 3 HOH A 79 226 51 HOH HOH . C 3 HOH A 80 227 52 HOH HOH . C 3 HOH A 81 228 53 HOH HOH . C 3 HOH A 82 229 54 HOH HOH . C 3 HOH A 83 230 55 HOH HOH . C 3 HOH A 84 231 56 HOH HOH . C 3 HOH A 85 232 57 HOH HOH . C 3 HOH A 86 233 58 HOH HOH . C 3 HOH A 87 234 59 HOH HOH . C 3 HOH A 88 235 60 HOH HOH . C 3 HOH A 89 236 61 HOH HOH . C 3 HOH A 90 237 62 HOH HOH . C 3 HOH A 91 238 63 HOH HOH . C 3 HOH A 92 239 64 HOH HOH . C 3 HOH A 93 240 65 HOH HOH . C 3 HOH A 94 241 66 HOH HOH . C 3 HOH A 95 242 68 HOH HOH . C 3 HOH A 96 243 69 HOH HOH . C 3 HOH A 97 244 70 HOH HOH . C 3 HOH A 98 245 71 HOH HOH . C 3 HOH A 99 246 72 HOH HOH . C 3 HOH A 100 247 73 HOH HOH . C 3 HOH A 101 248 74 HOH HOH . C 3 HOH A 102 249 75 HOH HOH . C 3 HOH A 103 250 76 HOH HOH . C 3 HOH A 104 251 77 HOH HOH . C 3 HOH A 105 252 78 HOH HOH . C 3 HOH A 106 253 79 HOH HOH . C 3 HOH A 107 254 80 HOH HOH . C 3 HOH A 108 255 81 HOH HOH . C 3 HOH A 109 256 83 HOH HOH . C 3 HOH A 110 257 84 HOH HOH . C 3 HOH A 111 258 85 HOH HOH . C 3 HOH A 112 259 86 HOH HOH . C 3 HOH A 113 260 89 HOH HOH . C 3 HOH A 114 261 90 HOH HOH . C 3 HOH A 115 262 91 HOH HOH . C 3 HOH A 116 263 92 HOH HOH . C 3 HOH A 117 264 94 HOH HOH . C 3 HOH A 118 265 95 HOH HOH . C 3 HOH A 119 266 96 HOH HOH . C 3 HOH A 120 267 97 HOH HOH . C 3 HOH A 121 268 98 HOH HOH . C 3 HOH A 122 269 100 HOH HOH . C 3 HOH A 123 270 101 HOH HOH . C 3 HOH A 124 271 102 HOH HOH . C 3 HOH A 125 272 103 HOH HOH . C 3 HOH A 126 273 104 HOH HOH . C 3 HOH A 127 274 105 HOH HOH . C 3 HOH A 128 275 107 HOH HOH . C 3 HOH A 129 276 108 HOH HOH . C 3 HOH A 130 277 109 HOH HOH . C 3 HOH A 131 278 110 HOH HOH . C 3 HOH A 132 279 111 HOH HOH . C 3 HOH A 133 280 112 HOH HOH . C 3 HOH A 134 281 113 HOH HOH . C 3 HOH A 135 282 114 HOH HOH . C 3 HOH A 136 283 115 HOH HOH . C 3 HOH A 137 284 116 HOH HOH . C 3 HOH A 138 285 117 HOH HOH . C 3 HOH A 139 286 118 HOH HOH . C 3 HOH A 140 287 119 HOH HOH . C 3 HOH A 141 288 120 HOH HOH . C 3 HOH A 142 289 121 HOH HOH . C 3 HOH A 143 290 122 HOH HOH . C 3 HOH A 144 291 123 HOH HOH . C 3 HOH A 145 292 124 HOH HOH . C 3 HOH A 146 293 125 HOH HOH . C 3 HOH A 147 294 126 HOH HOH . C 3 HOH A 148 295 127 HOH HOH . C 3 HOH A 149 296 128 HOH HOH . C 3 HOH A 150 297 130 HOH HOH . C 3 HOH A 151 298 132 HOH HOH . C 3 HOH A 152 299 133 HOH HOH . C 3 HOH A 153 300 134 HOH HOH . C 3 HOH A 154 301 137 HOH HOH . C 3 HOH A 155 302 138 HOH HOH . C 3 HOH A 156 303 140 HOH HOH . C 3 HOH A 157 304 143 HOH HOH . C 3 HOH A 158 305 144 HOH HOH . C 3 HOH A 159 306 145 HOH HOH . C 3 HOH A 160 307 146 HOH HOH . C 3 HOH A 161 308 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 CA2 . . . B 2 -37.919 -62.907 -52.359 1 15.71 ? O2 CA2 147 A 1 HETATM 2 C C7 CA2 . . . B 2 -37.728 -61.687 -52.001 1 17.69 ? C7 CA2 147 A 1 HETATM 3 O O1 CA2 . . . B 2 -36.597 -61.107 -51.923 1 14.86 ? O1 CA2 147 A 1 HETATM 4 C C1 CA2 . . . B 2 -38.952 -60.816 -51.635 1 19.14 ? C1 CA2 147 A 1 HETATM 5 O O3 CA2 . . . B 2 -39.028 -59.636 -52.502 1 25.94 ? O3 CA2 147 A 1 HETATM 6 C C2 CA2 . . . B 2 -38.756 -60.522 -50.268 1 21.58 ? C2 CA2 147 A 1 HETATM 7 C C3 CA2 . . . B 2 -39.833 -60.274 -49.393 1 23.01 ? C3 CA2 147 A 1 HETATM 8 C C4 CA2 . . . B 2 -41.331 -60.496 -49.765 1 21.91 ? C4 CA2 147 A 1 HETATM 9 O O4 CA2 . . . B 2 -42.278 -59.493 -49.222 1 23.15 ? O4 CA2 147 A 1 HETATM 10 C C5 CA2 . . . B 2 -41.461 -60.647 -51.294 1 20.08 ? C5 CA2 147 A 1 HETATM 11 O O5 CA2 . . . B 2 -42.686 -61.292 -51.642 1 18.13 ? O5 CA2 147 A 1 HETATM 12 C C6 CA2 . . . B 2 -40.304 -61.527 -51.791 1 15.78 ? C6 CA2 147 A 1 HETATM 13 C C8 CA2 . . . B 2 -39.361 -60.137 -48.101 1 27.89 ? C8 CA2 147 A 1 HETATM 14 C C9 CA2 . . . B 2 -40.046 -59.934 -46.929 1 31.11 ? C9 CA2 147 A 1 HETATM 15 C C10 CA2 . . . B 2 -39.105 -59.731 -45.932 1 34.31 ? C10 CA2 147 A 1 HETATM 16 O O11 CA2 . . . B 2 -39.171 -60.577 -44.865 1 35.59 ? O11 CA2 147 A 1 HETATM 17 C C12 CA2 . . . B 2 -38.043 -61.009 -44.249 1 30.93 ? C12 CA2 147 A 1 HETATM 18 C C17 CA2 . . . B 2 -36.825 -61.131 -44.898 1 30.74 ? C17 CA2 147 A 1 HETATM 19 C C16 CA2 . . . B 2 -35.689 -61.626 -44.226 1 27.41 ? C16 CA2 147 A 1 HETATM 20 C C15 CA2 . . . B 2 -35.821 -62.026 -42.901 1 27.35 ? C15 CA2 147 A 1 HETATM 21 C C14 CA2 . . . B 2 -37.069 -61.91 -42.242 1 28.47 ? C14 CA2 147 A 1 HETATM 22 C C13 CA2 . . . B 2 -38.18 -61.406 -42.915 1 29.3 ? C13 CA2 147 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #