data_3N7R # _model_server_result.job_id R21d4lgDMtirV0_PTYMfHQ _model_server_result.datetime_utc '2024-12-22 06:08:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3n7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 3N7R # _exptl.entry_id 3N7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 566.523 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(3R,6S)-6-(2,3-difluorophenyl)-2-oxo-1-(2,2,2-trifluoroethyl)azepan-3-yl]-4-(2-oxo-2,3-dihydro-1H-imidazo[4,5-b]pyridin-1-yl)piperidine-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3N7R _cell.length_a 77.94 _cell.length_b 118.2 _cell.length_c 133.26 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3N7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,G,J 1 1 B,C,F,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 48 1_555 A SG CYS 56 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 47 A CYS 65 1_555 A SG CYS 87 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 70 A CYS 88 1_555 A SG CYS 109 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 B SG CYS 30 B CYS 48 1_555 B SG CYS 56 B CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 B SG CYS 47 B CYS 65 1_555 B SG CYS 87 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf6 B SG CYS 70 B CYS 88 1_555 B SG CYS 109 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf7 C SG CYS 6 C CYS 27 1_555 C SG CYS 61 C CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf8 C SG CYS 19 C CYS 40 1_555 C SG CYS 51 C CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf9 C SG CYS 36 C CYS 57 1_555 C SG CYS 83 C CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf10 D SG CYS 6 D CYS 27 1_555 D SG CYS 61 D CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf11 D SG CYS 19 D CYS 40 1_555 D SG CYS 51 D CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf12 D SG CYS 36 D CYS 57 1_555 D SG CYS 83 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C26 H27 F5 N6 O3' _chem_comp.formula_weight 566.523 _chem_comp.id N7R _chem_comp.mon_nstd_flag . _chem_comp.name N-[(3R,6S)-6-(2,3-difluorophenyl)-2-oxo-1-(2,2,2-trifluoroethyl)azepan-3-yl]-4-(2-oxo-2,3-dihydro-1H-imidazo[4,5-b]pyridin-1-yl)piperidine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 F1 N7R sing 343 n n C3 C2 N7R doub 344 n y C2 C42 N7R sing 345 n y C4 C3 N7R sing 346 n y C3 H3 N7R sing 347 n n C4 C5 N7R doub 348 n y C4 H4 N7R sing 349 n n C5 C6 N7R sing 350 n y C5 H5 N7R sing 351 n n C6 C7 N7R sing 352 n n C6 C42 N7R doub 353 n y C41 C7 N7R sing 354 n n C9 C7 N7R sing 355 n n C7 H7 N7R sing 356 n n C10 C9 N7R sing 357 n n C9 H9 N7R sing 358 n n C9 H9A N7R sing 359 n n C11 C10 N7R sing 360 n n C10 H10 N7R sing 361 n n C10 H10A N7R sing 362 n n N13 C11 N7R sing 363 n n C11 C33 N7R sing 364 n n C11 H11 N7R sing 365 n n C14 N13 N7R sing 366 n n N13 HN13 N7R sing 367 n n O15 C14 N7R doub 368 n n N16 C14 N7R sing 369 n n C17 N16 N7R sing 370 n n N16 C21 N7R sing 371 n n C17 C18 N7R sing 372 n n C17 H17 N7R sing 373 n n C17 H17A N7R sing 374 n n C18 C19 N7R sing 375 n n C18 H18 N7R sing 376 n n C18 H18A N7R sing 377 n n N22 C19 N7R sing 378 n n C19 C20 N7R sing 379 n n C19 H19 N7R sing 380 n n C21 C20 N7R sing 381 n n C20 H20 N7R sing 382 n n C20 H20A N7R sing 383 n n C21 H21 N7R sing 384 n n C21 H21A N7R sing 385 n n C23 N22 N7R sing 386 n n N22 C32 N7R sing 387 n n O24 C23 N7R doub 388 n n C23 N25 N7R sing 389 n n N25 C27 N7R sing 390 n n N25 HN25 N7R sing 391 n n C27 C32 N7R doub 392 n y C27 N28 N7R sing 393 n y N28 C29 N7R doub 394 n y C29 C30 N7R sing 395 n y C29 H29 N7R sing 396 n n C31 C30 N7R doub 397 n y C30 H30 N7R sing 398 n n C32 C31 N7R sing 399 n y C31 H31 N7R sing 400 n n C33 O34 N7R doub 401 n n C33 N35 N7R sing 402 n n C41 N35 N7R sing 403 n n N35 C36 N7R sing 404 n n C36 C37 N7R sing 405 n n C36 H36 N7R sing 406 n n C36 H36A N7R sing 407 n n F38 C37 N7R sing 408 n n C37 F39 N7R sing 409 n n C37 F40 N7R sing 410 n n C41 H41 N7R sing 411 n n C41 H41A N7R sing 412 n n C42 F43 N7R sing 413 n n # _atom_sites.entry_id 3N7R _atom_sites.fract_transf_matrix[1][1] 0.01283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00846 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007504 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 3N6 A 1 1 1 3N6 3N6 . F 4 N7R B 1 1 1 N7R N7R . G 5 HOH A 1 200 200 HOH HOH . G 5 HOH A 2 201 201 HOH HOH . G 5 HOH A 3 202 202 HOH HOH . G 5 HOH A 4 203 203 HOH HOH . G 5 HOH A 5 204 204 HOH HOH . G 5 HOH A 6 205 205 HOH HOH . G 5 HOH A 7 206 206 HOH HOH . G 5 HOH A 8 207 207 HOH HOH . G 5 HOH A 9 208 208 HOH HOH . G 5 HOH A 10 209 209 HOH HOH . G 5 HOH A 11 210 210 HOH HOH . H 5 HOH B 1 200 200 HOH HOH . H 5 HOH B 2 201 201 HOH HOH . H 5 HOH B 3 202 202 HOH HOH . H 5 HOH B 4 203 203 HOH HOH . H 5 HOH B 5 204 204 HOH HOH . H 5 HOH B 6 205 205 HOH HOH . H 5 HOH B 7 206 206 HOH HOH . H 5 HOH B 8 207 207 HOH HOH . H 5 HOH B 9 208 208 HOH HOH . H 5 HOH B 10 209 209 HOH HOH . H 5 HOH B 11 210 210 HOH HOH . I 5 HOH C 1 200 200 HOH HOH . I 5 HOH C 2 201 201 HOH HOH . I 5 HOH C 3 202 202 HOH HOH . I 5 HOH C 4 203 203 HOH HOH . I 5 HOH C 5 204 204 HOH HOH . I 5 HOH C 6 205 205 HOH HOH . J 5 HOH D 1 200 200 HOH HOH . J 5 HOH D 2 201 201 HOH HOH . J 5 HOH D 3 202 202 HOH HOH . J 5 HOH D 4 203 203 HOH HOH . J 5 HOH D 5 204 204 HOH HOH . J 5 HOH D 6 205 205 HOH HOH . J 5 HOH D 7 206 206 HOH HOH . J 5 HOH D 8 207 207 HOH HOH . J 5 HOH D 9 208 208 HOH HOH . J 5 HOH D 10 209 209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F1 N7R . . . F 4 30.891 14.341 92.034 1 72.06 ? F1 N7R 1 B 1 HETATM 2 C C2 N7R . . . F 4 30.659 13.604 90.962 1 73.07 ? C2 N7R 1 B 1 HETATM 3 C C3 N7R . . . F 4 30.763 14.2 89.749 1 72.99 ? C3 N7R 1 B 1 HETATM 4 C C4 N7R . . . F 4 30.529 13.476 88.623 1 73.75 ? C4 N7R 1 B 1 HETATM 5 C C5 N7R . . . F 4 30.188 12.162 88.72 1 74.19 ? C5 N7R 1 B 1 HETATM 6 C C6 N7R . . . F 4 30.077 11.576 89.938 1 74.31 ? C6 N7R 1 B 1 HETATM 7 C C7 N7R . . . F 4 29.719 10.142 89.965 1 73.6 ? C7 N7R 1 B 1 HETATM 8 C C9 N7R . . . F 4 30.914 9.484 89.345 1 70.73 ? C9 N7R 1 B 1 HETATM 9 C C10 N7R . . . F 4 30.793 7.996 89.192 1 69.45 ? C10 N7R 1 B 1 HETATM 10 C C11 N7R . . . F 4 29.74 7.642 88.174 1 69.49 ? C11 N7R 1 B 1 HETATM 11 N N13 N7R . . . F 4 30.124 6.333 87.711 1 67.46 ? N13 N7R 1 B 1 HETATM 12 C C14 N7R . . . F 4 29.642 5.899 86.562 1 64.08 ? C14 N7R 1 B 1 HETATM 13 O O15 N7R . . . F 4 28.881 6.579 85.946 1 63.94 ? O15 N7R 1 B 1 HETATM 14 N N16 N7R . . . F 4 29.995 4.715 86.101 1 59.45 ? N16 N7R 1 B 1 HETATM 15 C C17 N7R . . . F 4 29.48 4.271 84.835 1 57 ? C17 N7R 1 B 1 HETATM 16 C C18 N7R . . . F 4 28.887 2.903 85.052 1 57.2 ? C18 N7R 1 B 1 HETATM 17 C C19 N7R . . . F 4 30.02 2.057 85.537 1 58.2 ? C19 N7R 1 B 1 HETATM 18 C C20 N7R . . . F 4 30.304 2.496 86.95 1 56.86 ? C20 N7R 1 B 1 HETATM 19 C C21 N7R . . . F 4 30.926 3.877 86.827 1 57.56 ? C21 N7R 1 B 1 HETATM 20 N N22 N7R . . . F 4 29.579 0.687 85.501 1 61.73 ? N22 N7R 1 B 1 HETATM 21 C C23 N7R . . . F 4 30.199 -0.261 84.842 1 63.88 ? C23 N7R 1 B 1 HETATM 22 O O24 N7R . . . F 4 31.191 -0.107 84.196 1 63.8 ? O24 N7R 1 B 1 HETATM 23 N N25 N7R . . . F 4 29.568 -1.406 85.004 1 65.35 ? N25 N7R 1 B 1 HETATM 24 C C27 N7R . . . F 4 28.479 -1.193 85.799 1 65.73 ? C27 N7R 1 B 1 HETATM 25 N N28 N7R . . . F 4 27.547 -1.988 86.236 1 66.96 ? N28 N7R 1 B 1 HETATM 26 C C29 N7R . . . F 4 26.579 -1.554 86.99 1 66.66 ? C29 N7R 1 B 1 HETATM 27 C C30 N7R . . . F 4 26.507 -0.237 87.343 1 65.85 ? C30 N7R 1 B 1 HETATM 28 C C31 N7R . . . F 4 27.473 0.629 86.9 1 65.34 ? C31 N7R 1 B 1 HETATM 29 C C32 N7R . . . F 4 28.48 0.139 86.114 1 64.14 ? C32 N7R 1 B 1 HETATM 30 C C33 N7R . . . F 4 28.46 7.592 88.922 1 72.32 ? C33 N7R 1 B 1 HETATM 31 O O34 N7R . . . F 4 27.954 6.535 89.131 1 72.08 ? O34 N7R 1 B 1 HETATM 32 N N35 N7R . . . F 4 27.905 8.71 89.323 1 76.05 ? N35 N7R 1 B 1 HETATM 33 C C36 N7R . . . F 4 26.676 8.707 90.072 1 82.01 ? C36 N7R 1 B 1 HETATM 34 C C37 N7R . . . F 4 27.189 8.348 91.447 1 88.86 ? C37 N7R 1 B 1 HETATM 35 F F38 N7R . . . F 4 28.196 7.449 91.22 1 91.35 ? F38 N7R 1 B 1 HETATM 36 F F39 N7R . . . F 4 27.709 9.419 92.155 1 88.82 ? F39 N7R 1 B 1 HETATM 37 F F40 N7R . . . F 4 26.218 7.747 92.209 1 92 ? F40 N7R 1 B 1 HETATM 38 C C41 N7R . . . F 4 28.531 9.988 89.052 1 74.99 ? C41 N7R 1 B 1 HETATM 39 C C42 N7R . . . F 4 30.319 12.285 91.075 1 74.7 ? C42 N7R 1 B 1 HETATM 40 F F43 N7R . . . F 4 30.213 11.688 92.269 1 75.67 ? F43 N7R 1 B 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #