data_3N8M
#
_model_server_result.job_id            92ZKCfHF2CSdBW_inTWBUw 
_model_server_result.datetime_utc      '2024-10-20 20:43:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3n8m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":9}' 
#
_entry.id    3N8M 
#
_exptl.entry_id    3N8M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3N8M 
_cell.length_a            49.24 
_cell.length_b            49.24 
_cell.length_c            86.128 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3N8M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,B,C,D,E 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 43.064 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C 6NA 1 B 6NA 1 1_555 B N PTR 2 B PTR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 B C PTR 2 B PTR 2 1_555 B N VAL 3 B VAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 B C VAL 5 B VAL 5 1_555 B N 9PR 6 B 9PR 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 156 n n 
C1 C2 GOL sing 157 n n 
C1 H11 GOL sing 158 n n 
C1 H12 GOL sing 159 n n 
O1 HO1 GOL sing 160 n n 
C2 O2 GOL sing 161 n n 
C2 C3 GOL sing 162 n n 
C2 H2 GOL sing 163 n n 
O2 HO2 GOL sing 164 n n 
C3 O3 GOL sing 165 n n 
C3 H31 GOL sing 166 n n 
C3 H32 GOL sing 167 n n 
O3 HO3 GOL sing 168 n n 
#
_atom_sites.entry_id                     3N8M 
_atom_sites.fract_transf_matrix[1][1]    0.020309 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020309 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011611 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL B 1 9 9 GOL GOL . 
D 4 HOH A 1 1 1 HOH HOH . 
D 4 HOH A 2 2 2 HOH HOH . 
D 4 HOH A 3 3 3 HOH HOH . 
D 4 HOH A 4 4 4 HOH HOH . 
D 4 HOH A 5 5 5 HOH HOH . 
D 4 HOH A 6 7 7 HOH HOH . 
D 4 HOH A 7 8 8 HOH HOH . 
D 4 HOH A 8 9 9 HOH HOH . 
D 4 HOH A 9 10 10 HOH HOH . 
D 4 HOH A 10 11 11 HOH HOH . 
D 4 HOH A 11 12 12 HOH HOH . 
D 4 HOH A 12 13 13 HOH HOH . 
D 4 HOH A 13 14 14 HOH HOH . 
D 4 HOH A 14 15 15 HOH HOH . 
D 4 HOH A 15 16 16 HOH HOH . 
D 4 HOH A 16 17 17 HOH HOH . 
D 4 HOH A 17 18 18 HOH HOH . 
D 4 HOH A 18 19 19 HOH HOH . 
D 4 HOH A 19 20 20 HOH HOH . 
D 4 HOH A 20 21 21 HOH HOH . 
D 4 HOH A 21 22 22 HOH HOH . 
D 4 HOH A 22 23 23 HOH HOH . 
D 4 HOH A 23 24 24 HOH HOH . 
D 4 HOH A 24 25 25 HOH HOH . 
D 4 HOH A 25 26 26 HOH HOH . 
D 4 HOH A 26 27 27 HOH HOH . 
D 4 HOH A 27 28 28 HOH HOH . 
D 4 HOH A 28 29 29 HOH HOH . 
D 4 HOH A 29 31 31 HOH HOH . 
D 4 HOH A 30 32 32 HOH HOH . 
D 4 HOH A 31 33 33 HOH HOH . 
D 4 HOH A 32 34 34 HOH HOH . 
D 4 HOH A 33 35 35 HOH HOH . 
D 4 HOH A 34 36 36 HOH HOH . 
D 4 HOH A 35 37 37 HOH HOH . 
D 4 HOH A 36 38 38 HOH HOH . 
D 4 HOH A 37 39 39 HOH HOH . 
D 4 HOH A 38 40 40 HOH HOH . 
D 4 HOH A 39 41 41 HOH HOH . 
D 4 HOH A 40 42 42 HOH HOH . 
D 4 HOH A 41 43 43 HOH HOH . 
D 4 HOH A 42 44 44 HOH HOH . 
D 4 HOH A 43 45 45 HOH HOH . 
D 4 HOH A 44 46 46 HOH HOH . 
D 4 HOH A 45 47 47 HOH HOH . 
D 4 HOH A 46 48 48 HOH HOH . 
D 4 HOH A 47 49 49 HOH HOH . 
D 4 HOH A 48 50 50 HOH HOH . 
D 4 HOH A 49 51 51 HOH HOH . 
D 4 HOH A 50 52 52 HOH HOH . 
D 4 HOH A 51 170 170 HOH HOH . 
D 4 HOH A 52 171 171 HOH HOH . 
D 4 HOH A 53 172 172 HOH HOH . 
D 4 HOH A 54 173 173 HOH HOH . 
D 4 HOH A 55 174 174 HOH HOH . 
D 4 HOH A 56 175 175 HOH HOH . 
D 4 HOH A 57 176 176 HOH HOH . 
D 4 HOH A 58 177 177 HOH HOH . 
D 4 HOH A 59 178 178 HOH HOH . 
D 4 HOH A 60 179 179 HOH HOH . 
D 4 HOH A 61 180 180 HOH HOH . 
D 4 HOH A 62 181 181 HOH HOH . 
D 4 HOH A 63 182 182 HOH HOH . 
D 4 HOH A 64 183 183 HOH HOH . 
D 4 HOH A 65 184 184 HOH HOH . 
D 4 HOH A 66 185 185 HOH HOH . 
D 4 HOH A 67 186 186 HOH HOH . 
D 4 HOH A 68 187 187 HOH HOH . 
D 4 HOH A 69 188 188 HOH HOH . 
D 4 HOH A 70 189 189 HOH HOH . 
D 4 HOH A 71 190 190 HOH HOH . 
D 4 HOH A 72 191 191 HOH HOH . 
D 4 HOH A 73 192 192 HOH HOH . 
D 4 HOH A 74 193 193 HOH HOH . 
D 4 HOH A 75 194 194 HOH HOH . 
D 4 HOH A 76 195 195 HOH HOH . 
D 4 HOH A 77 196 196 HOH HOH . 
D 4 HOH A 78 197 197 HOH HOH . 
D 4 HOH A 79 198 198 HOH HOH . 
D 4 HOH A 80 199 199 HOH HOH . 
D 4 HOH A 81 200 200 HOH HOH . 
D 4 HOH A 82 201 201 HOH HOH . 
D 4 HOH A 83 202 202 HOH HOH . 
D 4 HOH A 84 203 203 HOH HOH . 
D 4 HOH A 85 204 204 HOH HOH . 
D 4 HOH A 86 205 205 HOH HOH . 
D 4 HOH A 87 206 206 HOH HOH . 
D 4 HOH A 88 207 207 HOH HOH . 
D 4 HOH A 89 208 208 HOH HOH . 
D 4 HOH A 90 209 209 HOH HOH . 
D 4 HOH A 91 210 210 HOH HOH . 
D 4 HOH A 92 211 211 HOH HOH . 
D 4 HOH A 93 212 212 HOH HOH . 
D 4 HOH A 94 213 213 HOH HOH . 
D 4 HOH A 95 214 214 HOH HOH . 
D 4 HOH A 96 215 215 HOH HOH . 
D 4 HOH A 97 216 216 HOH HOH . 
D 4 HOH A 98 217 217 HOH HOH . 
D 4 HOH A 99 218 218 HOH HOH . 
D 4 HOH A 100 219 219 HOH HOH . 
D 4 HOH A 101 220 220 HOH HOH . 
D 4 HOH A 102 221 221 HOH HOH . 
D 4 HOH A 103 222 222 HOH HOH . 
D 4 HOH A 104 223 223 HOH HOH . 
E 4 HOH B 1 10 10 HOH HOH . 
E 4 HOH B 2 30 30 HOH HOH . 
E 4 HOH B 3 106 106 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 17.553 -3.718 10.752 1 40.08 ? C1 GOL 9 B 1 
HETATM 2 O O1 GOL . . . C 3 17.282 -2.665 9.874 1 39.11 ? O1 GOL 9 B 1 
HETATM 3 C C2 GOL . . . C 3 17.972 -3.168 12.098 1 41.66 ? C2 GOL 9 B 1 
HETATM 4 O O2 GOL . . . C 3 16.896 -2.389 12.62 1 43.41 ? O2 GOL 9 B 1 
HETATM 5 C C3 GOL . . . C 3 18.259 -4.336 13.024 1 41.93 ? C3 GOL 9 B 1 
HETATM 6 O O3 GOL . . . C 3 18.66 -3.852 14.294 1 45.04 ? O3 GOL 9 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#